Wall clock time and date at job start Tue Mar 31 2020 17:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47147 * 2 1 4 4 N 1.46500 * 109.47371 * 240.00061 * 2 1 3 5 5 C 1.36932 * 119.99995 * 84.99789 * 4 2 1 6 6 H 1.07997 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00000 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99952 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00038 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47162 * 89.99881 * 9 7 5 11 11 H 1.48499 * 109.47118 * 209.99949 * 9 7 5 12 12 H 1.48499 * 109.47145 * 330.00166 * 9 7 5 13 13 C 1.53006 * 109.46936 * 119.99946 * 2 1 3 14 14 H 1.08999 * 109.55479 * 300.12500 * 13 2 1 15 15 C 1.53297 * 109.51271 * 180.02562 * 13 2 1 16 16 N 1.47149 * 108.38581 * 187.77273 * 15 13 2 17 17 C 1.34771 * 120.98267 * 230.55386 * 16 15 13 18 18 O 1.21279 * 120.00260 * 355.00263 * 17 16 15 19 19 C 1.50702 * 119.99702 * 174.99424 * 17 16 15 20 20 C 1.52997 * 109.47483 * 300.58116 * 19 17 16 21 21 C 1.52994 * 109.47204 * 60.58372 * 19 17 16 22 22 C 1.53006 * 109.47177 * 180.57985 * 19 17 16 23 23 C 1.52996 * 109.47523 * 180.02562 * 22 19 17 24 24 F 1.39905 * 109.46921 * 300.00701 * 22 19 17 25 25 F 1.39901 * 109.46936 * 59.99765 * 22 19 17 26 26 C 1.47153 * 118.03552 * 50.53837 * 16 15 13 27 27 C 1.53298 * 108.38234 * 309.46560 * 26 16 15 28 28 O 1.42952 * 109.50975 * 60.20602 * 13 2 1 29 29 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46982 * 299.99571 * 1 2 3 31 31 H 1.08999 * 109.46997 * 59.99982 * 1 2 3 32 32 H 0.97005 * 119.99811 * 265.00143 * 4 2 1 33 33 H 0.97001 * 120.00054 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.68469 * 68.04795 * 15 13 2 35 35 H 1.09006 * 109.71152 * 307.51788 * 15 13 2 36 36 H 1.08996 * 109.47218 * 44.62121 * 20 19 17 37 37 H 1.08998 * 109.47361 * 164.61980 * 20 19 17 38 38 H 1.09003 * 109.47283 * 284.62072 * 20 19 17 39 39 H 1.09006 * 109.47470 * 68.88440 * 21 19 17 40 40 H 1.09001 * 109.47743 * 188.88655 * 21 19 17 41 41 H 1.09004 * 109.47186 * 308.88854 * 21 19 17 42 42 H 1.08994 * 109.46971 * 59.99769 * 23 22 19 43 43 H 1.08997 * 109.47102 * 180.02562 * 23 22 19 44 44 H 1.09008 * 109.46943 * 299.99832 * 23 22 19 45 45 H 1.08994 * 109.68552 * 189.74213 * 26 16 15 46 46 H 1.09001 * 109.68528 * 69.18174 * 26 16 15 47 47 H 1.08997 * 109.51498 * 172.22901 * 27 26 16 48 48 H 1.09005 * 109.51025 * 292.32585 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4241 7 6 2.6124 -0.6617 -3.5090 8 7 2.9255 -1.9387 -3.4498 9 14 2.7915 0.2703 -5.1179 10 1 4.1537 0.8555 -5.2020 11 1 2.5817 -0.6609 -6.2554 12 1 1.7815 1.3574 -5.1753 13 6 2.0400 -0.7213 1.2493 14 1 1.6756 -0.2098 2.1402 15 6 3.5730 -0.7213 1.2506 16 7 4.0361 -1.5768 2.3547 17 6 4.9508 -1.1331 3.2394 18 8 5.4718 -0.0494 3.0812 19 6 5.3262 -1.9835 4.4256 20 6 4.0808 -2.2579 5.2710 21 6 5.9133 -3.3093 3.9372 22 6 6.3656 -1.2468 5.2729 23 6 6.7472 -2.1105 6.4768 24 9 7.5043 -0.9959 4.4998 25 9 5.8288 -0.0345 5.7194 26 6 3.4708 -2.9309 2.4644 27 6 1.9428 -2.8233 2.4039 28 8 1.5679 -2.0706 1.2477 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 -1.1526 33 1 3.2496 -2.3958 -4.2417 34 1 3.9400 0.2949 1.3948 35 1 3.9414 -1.1136 0.3027 36 1 3.2507 -2.5275 4.6182 37 1 4.2827 -3.0783 5.9596 38 1 3.8219 -1.3634 5.8375 39 1 6.8818 -3.1280 3.4711 40 1 6.0380 -3.9851 4.7833 41 1 5.2383 -3.7593 3.2092 42 1 7.1655 -3.0547 6.1285 43 1 7.4873 -1.5854 7.0805 44 1 5.8601 -2.3063 7.0792 45 1 3.7700 -3.3781 3.4123 46 1 3.8283 -3.5461 1.6386 47 1 1.5095 -3.8217 2.3446 48 1 1.5775 -2.3205 3.2994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485649034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:07 Heat of formation + Delta-G solvation = -146.914110 kcal Electronic energy + Delta-G solvation = -31803.707182 eV Core-core repulsion = 27337.912250 eV Total energy + Delta-G solvation = -4465.794932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.00377 -46.96365 -40.78438 -38.54776 -36.44353 -35.36743 -34.46876 -32.30880 -30.79888 -29.88659 -28.41673 -27.91701 -27.69723 -25.19013 -24.27013 -23.47936 -22.80858 -20.80660 -19.71562 -19.36629 -17.49651 -17.46908 -17.14600 -17.01439 -16.16949 -16.04485 -15.50759 -15.43840 -14.98047 -14.78537 -14.39690 -14.23237 -14.02221 -13.60401 -13.52377 -13.34686 -13.28140 -13.19388 -13.15751 -12.91103 -12.72624 -12.48565 -12.29734 -12.19071 -12.09640 -11.88333 -11.65428 -11.52940 -11.34825 -11.17225 -10.86040 -10.82212 -10.76866 -10.48064 -10.27966 -10.03654 -9.88216 -9.56864 -9.53605 -8.90800 -8.39014 -6.91186 -5.72491 -3.00760 2.54135 2.77875 3.42203 3.46716 3.52201 3.53194 3.76459 3.94053 3.98645 4.10432 4.43607 4.59399 4.59761 4.62375 4.73327 4.87484 4.99280 5.06058 5.12227 5.19030 5.24445 5.26064 5.33327 5.35044 5.36212 5.45363 5.46815 5.59718 5.62868 5.68396 5.76458 5.82654 5.85934 6.00968 6.21827 6.34159 6.41190 6.55324 6.66987 6.78793 7.13711 7.34299 7.45096 7.74112 8.10018 8.45843 9.58285 10.14914 10.52298 11.49793 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.003297 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.558054 B = 8491.426325 C = 9037.586877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.079 3.921 14 H 0.055 0.945 15 C 0.086 3.914 16 N -0.606 5.606 17 C 0.523 3.477 18 O -0.521 6.521 19 C -0.125 4.125 20 C -0.159 4.159 21 C -0.164 4.164 22 C 0.313 3.687 23 C -0.196 4.196 24 F -0.190 7.190 25 F -0.192 7.192 26 C 0.049 3.951 27 C 0.046 3.954 28 O -0.357 6.357 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.390 0.610 33 H 0.254 0.746 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -6.561 23.132 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.359 5.359 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.035 4.035 16 N -0.340 5.340 17 C 0.310 3.690 18 O -0.396 6.396 19 C -0.129 4.129 20 C -0.216 4.216 21 C -0.221 4.221 22 C 0.276 3.724 23 C -0.254 4.254 24 F -0.171 7.171 25 F -0.172 7.172 26 C -0.074 4.074 27 C -0.032 4.032 28 O -0.274 6.274 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.225 0.775 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.126 0.874 46 H 0.103 0.897 47 H 0.121 0.879 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.973 -5.879 22.724 23.660 hybrid contribution 0.376 0.336 -0.798 0.944 sum 3.349 -5.543 21.927 22.863 Atomic orbital electron populations 1.22348 0.98493 1.01537 0.99644 1.20259 0.92770 0.94660 0.85158 0.92237 1.42375 1.77673 1.10989 1.04896 1.19244 1.36519 0.93816 0.87423 0.91222 1.24709 1.02206 0.95916 0.97936 1.69671 1.50806 1.08603 1.28790 0.86227 0.77778 0.78600 0.83808 1.21787 1.21875 1.20813 1.22930 0.92195 0.83303 0.99631 0.92757 1.22466 0.94836 0.96477 0.89724 1.48048 1.41670 1.15315 1.28937 1.19994 0.79410 0.86590 0.83051 1.90775 1.51899 1.21948 1.75006 1.21848 0.97642 0.97968 0.95472 1.22262 0.95582 1.03626 1.00147 1.22361 1.03086 0.93558 1.03077 1.20583 0.81071 0.81574 0.89124 1.22871 1.04652 1.01099 0.96754 1.93035 1.52040 1.94921 1.77108 1.93021 1.86377 1.48110 1.89738 1.23084 0.95699 0.84511 1.04103 1.22935 0.92879 0.97664 0.89753 1.88116 1.75124 1.23580 1.40629 0.92557 0.94874 0.92733 0.77529 0.93628 0.88616 0.88345 0.89730 0.90300 0.90763 0.90703 0.90381 0.89244 0.88956 0.89788 0.89042 0.87437 0.89722 0.87850 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.35 37.16 0.35 -2.61 16 2 C 0.18 3.63 2.73 -67.93 -0.19 3.45 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -17.72 4.29 -53.42 -0.23 -17.95 16 5 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 9 Si 0.90 22.57 29.55 -169.99 -5.02 17.54 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 C 0.08 1.33 2.53 -26.57 -0.07 1.27 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 15 C 0.09 1.54 5.85 -3.53 -0.02 1.51 16 16 N -0.61 -8.84 3.00 -172.27 -0.52 -9.36 16 17 C 0.52 8.00 6.26 -10.99 -0.07 7.93 16 18 O -0.52 -10.29 14.33 5.56 0.08 -10.21 16 19 C -0.13 -1.31 0.24 -155.66 -0.04 -1.35 16 20 C -0.16 -1.18 7.24 37.16 0.27 -0.91 16 21 C -0.16 -1.31 7.43 37.15 0.28 -1.03 16 22 C 0.31 3.62 1.15 -26.73 -0.03 3.59 16 23 C -0.20 -1.31 8.72 37.16 0.32 -0.98 16 24 F -0.19 -2.79 15.47 2.25 0.03 -2.76 16 25 F -0.19 -2.72 15.41 2.25 0.03 -2.69 16 26 C 0.05 0.53 4.03 -3.53 -0.01 0.52 16 27 C 0.05 0.52 6.76 37.31 0.25 0.77 16 28 O -0.36 -5.87 9.22 -35.23 -0.32 -6.19 16 29 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.39 10.36 7.21 -40.82 -0.29 10.07 16 33 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.10 1.82 7.12 -51.93 -0.37 1.45 16 35 H 0.10 2.06 7.28 -51.93 -0.38 1.68 16 36 H 0.08 0.60 4.29 -51.93 -0.22 0.38 16 37 H 0.08 0.33 7.11 -51.93 -0.37 -0.04 16 38 H 0.07 0.62 7.42 -51.93 -0.39 0.23 16 39 H 0.07 0.71 7.57 -51.93 -0.39 0.32 16 40 H 0.08 0.37 6.78 -51.93 -0.35 0.02 16 41 H 0.09 0.68 4.60 -51.93 -0.24 0.44 16 42 H 0.09 0.45 6.64 -51.93 -0.34 0.11 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.43 6.80 -51.92 -0.35 0.08 16 45 H 0.11 0.81 2.99 -51.93 -0.16 0.65 16 46 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.49 7.53 -51.93 -0.39 0.10 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -34.75 367.40 -6.03 -40.78 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.15 Total: 7.56 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 0.80 Total: 5.00 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.02 Total: -54.57 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.25 Total: -16.40 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.07 Total: -5.45 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.75 -6.03 -40.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485649034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.132 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds