Wall clock time and date at job start Tue Mar 31 2020 17:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47147 * 2 1 4 4 N 1.46500 * 109.47371 * 240.00061 * 2 1 3 5 5 C 1.36932 * 119.99995 * 84.99789 * 4 2 1 6 6 H 1.07997 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00000 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99952 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00038 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47162 * 89.99881 * 9 7 5 11 11 H 1.48499 * 109.47118 * 209.99949 * 9 7 5 12 12 H 1.48499 * 109.47145 * 330.00166 * 9 7 5 13 13 C 1.53006 * 109.46936 * 119.99946 * 2 1 3 14 14 H 1.08999 * 109.55479 * 300.12500 * 13 2 1 15 15 C 1.53297 * 109.51271 * 180.02562 * 13 2 1 16 16 N 1.47149 * 108.38581 * 187.77273 * 15 13 2 17 17 C 1.34771 * 120.98267 * 230.55386 * 16 15 13 18 18 O 1.21279 * 120.00260 * 355.00263 * 17 16 15 19 19 C 1.50702 * 119.99702 * 174.99424 * 17 16 15 20 20 C 1.52997 * 109.47483 * 300.58116 * 19 17 16 21 21 C 1.52994 * 109.47204 * 60.58372 * 19 17 16 22 22 C 1.53006 * 109.47177 * 180.57985 * 19 17 16 23 23 C 1.52996 * 109.47523 * 180.02562 * 22 19 17 24 24 F 1.39905 * 109.46921 * 300.00701 * 22 19 17 25 25 F 1.39901 * 109.46936 * 59.99765 * 22 19 17 26 26 C 1.47153 * 118.03552 * 50.53837 * 16 15 13 27 27 C 1.53298 * 108.38234 * 309.46560 * 26 16 15 28 28 O 1.42952 * 109.50975 * 60.20602 * 13 2 1 29 29 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46982 * 299.99571 * 1 2 3 31 31 H 1.08999 * 109.46997 * 59.99982 * 1 2 3 32 32 H 0.97005 * 119.99811 * 265.00143 * 4 2 1 33 33 H 0.97001 * 120.00054 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.68469 * 68.04795 * 15 13 2 35 35 H 1.09006 * 109.71152 * 307.51788 * 15 13 2 36 36 H 1.08996 * 109.47218 * 44.62121 * 20 19 17 37 37 H 1.08998 * 109.47361 * 164.61980 * 20 19 17 38 38 H 1.09003 * 109.47283 * 284.62072 * 20 19 17 39 39 H 1.09006 * 109.47470 * 68.88440 * 21 19 17 40 40 H 1.09001 * 109.47743 * 188.88655 * 21 19 17 41 41 H 1.09004 * 109.47186 * 308.88854 * 21 19 17 42 42 H 1.08994 * 109.46971 * 59.99769 * 23 22 19 43 43 H 1.08997 * 109.47102 * 180.02562 * 23 22 19 44 44 H 1.09008 * 109.46943 * 299.99832 * 23 22 19 45 45 H 1.08994 * 109.68552 * 189.74213 * 26 16 15 46 46 H 1.09001 * 109.68528 * 69.18174 * 26 16 15 47 47 H 1.08997 * 109.51498 * 172.22901 * 27 26 16 48 48 H 1.09005 * 109.51025 * 292.32585 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4241 7 6 2.6124 -0.6617 -3.5090 8 7 2.9255 -1.9387 -3.4498 9 14 2.7915 0.2703 -5.1179 10 1 4.1537 0.8555 -5.2020 11 1 2.5817 -0.6609 -6.2554 12 1 1.7815 1.3574 -5.1753 13 6 2.0400 -0.7213 1.2493 14 1 1.6756 -0.2098 2.1402 15 6 3.5730 -0.7213 1.2506 16 7 4.0361 -1.5768 2.3547 17 6 4.9508 -1.1331 3.2394 18 8 5.4718 -0.0494 3.0812 19 6 5.3262 -1.9835 4.4256 20 6 4.0808 -2.2579 5.2710 21 6 5.9133 -3.3093 3.9372 22 6 6.3656 -1.2468 5.2729 23 6 6.7472 -2.1105 6.4768 24 9 7.5043 -0.9959 4.4998 25 9 5.8288 -0.0345 5.7194 26 6 3.4708 -2.9309 2.4644 27 6 1.9428 -2.8233 2.4039 28 8 1.5679 -2.0706 1.2477 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 -1.1526 33 1 3.2496 -2.3958 -4.2417 34 1 3.9400 0.2949 1.3948 35 1 3.9414 -1.1136 0.3027 36 1 3.2507 -2.5275 4.6182 37 1 4.2827 -3.0783 5.9596 38 1 3.8219 -1.3634 5.8375 39 1 6.8818 -3.1280 3.4711 40 1 6.0380 -3.9851 4.7833 41 1 5.2383 -3.7593 3.2092 42 1 7.1655 -3.0547 6.1285 43 1 7.4873 -1.5854 7.0805 44 1 5.8601 -2.3063 7.0792 45 1 3.7700 -3.3781 3.4123 46 1 3.8283 -3.5461 1.6386 47 1 1.5095 -3.8217 2.3446 48 1 1.5775 -2.3205 3.2994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485649034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:06 Heat of formation + Delta-G solvation = -171.594730 kcal Electronic energy + Delta-G solvation = -31804.777414 eV Core-core repulsion = 27337.912250 eV Total energy + Delta-G solvation = -4466.865164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.95271 -47.95417 -41.91163 -39.80361 -37.52669 -36.88150 -35.68598 -34.17939 -31.96111 -30.86457 -30.11877 -28.96732 -28.46760 -26.04654 -25.87565 -25.04478 -23.92570 -21.89150 -21.18468 -20.40446 -19.36406 -18.39265 -18.31806 -18.05988 -17.48567 -17.04467 -16.72210 -16.48642 -16.33104 -16.16968 -15.88152 -15.30587 -15.16549 -15.02769 -14.75375 -14.56339 -14.39660 -14.29237 -13.97642 -13.76262 -13.73977 -13.51915 -13.46499 -13.40803 -13.08307 -12.84245 -12.79644 -12.75987 -12.52265 -12.44989 -12.42574 -12.32069 -12.18591 -11.81065 -11.72400 -11.69477 -11.44917 -11.12023 -10.95824 -10.65594 -9.65678 -8.96227 -7.91249 -5.18234 1.39781 1.46426 1.47885 1.55695 1.66406 2.56582 2.61240 2.78049 3.01330 3.17726 3.36047 3.42474 3.63613 3.68710 3.89557 3.91243 3.93211 3.97257 4.00178 4.10355 4.24667 4.27772 4.46710 4.49481 4.57310 4.60589 4.61206 4.71243 4.74861 4.76214 4.78178 4.82390 4.84391 4.96115 5.00693 5.07720 5.16987 5.19243 5.21169 5.26592 5.52438 5.59646 6.20645 6.25496 6.32002 6.92900 7.37929 8.13577 8.39474 9.31929 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.003297 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.558054 B = 8491.426325 C = 9037.586877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.172 3.828 3 H 0.054 0.946 4 N -0.725 5.725 5 C -0.237 4.237 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.966 5.966 9 Si 0.967 3.033 10 H -0.292 1.292 11 H -0.295 1.295 12 H -0.270 1.270 13 C 0.097 3.903 14 H 0.077 0.923 15 C 0.095 3.905 16 N -0.604 5.604 17 C 0.511 3.489 18 O -0.579 6.579 19 C -0.118 4.118 20 C -0.158 4.158 21 C -0.164 4.164 22 C 0.291 3.709 23 C -0.187 4.187 24 F -0.217 7.217 25 F -0.214 7.214 26 C 0.046 3.954 27 C 0.038 3.962 28 O -0.382 6.382 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.378 0.622 33 H 0.249 0.751 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.083 0.917 44 H 0.119 0.881 45 H 0.151 0.849 46 H 0.075 0.925 47 H 0.134 0.866 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 -8.392 26.045 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.063 3.937 3 H 0.072 0.928 4 N -0.367 5.367 5 C -0.369 4.369 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.796 3.204 10 H -0.220 1.220 11 H -0.222 1.222 12 H -0.195 1.195 13 C 0.037 3.963 14 H 0.095 0.905 15 C -0.029 4.029 16 N -0.337 5.337 17 C 0.300 3.700 18 O -0.458 6.458 19 C -0.122 4.122 20 C -0.215 4.215 21 C -0.220 4.220 22 C 0.255 3.745 23 C -0.244 4.244 24 F -0.198 7.198 25 F -0.195 7.195 26 C -0.075 4.075 27 C -0.039 4.039 28 O -0.300 6.300 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.211 0.789 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.102 0.898 44 H 0.138 0.862 45 H 0.168 0.832 46 H 0.093 0.907 47 H 0.152 0.848 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.862 -7.713 25.682 26.880 hybrid contribution 0.719 0.931 -1.625 2.006 sum 2.581 -6.782 24.058 25.128 Atomic orbital electron populations 1.22156 0.96713 1.01271 1.00531 1.20502 0.93874 0.94446 0.84912 0.92806 1.42465 1.78036 1.10488 1.05672 1.19613 1.34757 0.94064 0.88468 0.90884 1.25452 1.03165 0.96828 1.01107 1.69820 1.52616 1.10038 1.29184 0.85236 0.77642 0.77545 0.79936 1.21974 1.22210 1.19504 1.22558 0.90933 0.84220 0.98556 0.90529 1.22049 0.95795 0.95699 0.89324 1.48123 1.41581 1.16287 1.27700 1.21089 0.78288 0.86519 0.84107 1.90739 1.53804 1.24757 1.76533 1.21966 0.99093 0.97731 0.93395 1.22371 0.93753 1.04989 1.00349 1.22460 1.01864 0.92774 1.04946 1.21452 0.80597 0.81481 0.90996 1.22930 1.06098 1.00789 0.94599 1.92977 1.53534 1.95155 1.78182 1.92971 1.86686 1.49894 1.89955 1.23399 0.95600 0.82395 1.06066 1.23332 0.92977 0.98715 0.88858 1.88070 1.75328 1.23179 1.43455 0.93305 0.91381 0.94373 0.78899 0.94243 0.90905 0.92431 0.89222 0.85659 0.91699 0.92771 0.85677 0.88808 0.86600 0.89754 0.86223 0.83151 0.90660 0.84834 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.35 71.98 0.67 -4.63 16 2 C 0.17 6.93 2.73 44.99 0.12 7.05 16 3 H 0.05 2.22 8.08 -2.39 -0.02 2.20 16 4 N -0.73 -37.01 4.29 -322.93 -1.39 -38.39 16 5 C -0.24 -13.38 9.93 84.04 0.83 -12.54 16 6 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 7 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 8 N -0.97 -59.90 13.06 21.65 0.28 -59.61 16 9 Si 0.97 47.42 29.55 68.60 2.03 49.44 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.10 3.26 2.53 30.70 0.08 3.34 16 14 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 15 C 0.09 3.53 5.85 86.36 0.50 4.04 16 16 N -0.60 -17.63 3.00 -817.35 -2.45 -20.08 16 17 C 0.51 15.74 6.26 87.66 0.55 16.29 16 18 O -0.58 -24.19 14.33 -3.03 -0.04 -24.23 16 19 C -0.12 -2.22 0.24 -52.93 -0.01 -2.23 16 20 C -0.16 -1.64 7.24 71.98 0.52 -1.11 16 21 C -0.16 -2.08 7.43 71.98 0.54 -1.55 16 22 C 0.29 6.37 1.15 30.60 0.04 6.40 16 23 C -0.19 -1.81 8.72 71.98 0.63 -1.18 16 24 F -0.22 -6.53 15.47 44.97 0.70 -5.83 16 25 F -0.21 -6.09 15.41 44.97 0.69 -5.39 16 26 C 0.05 0.91 4.03 86.35 0.35 1.26 16 27 C 0.04 0.75 6.76 72.08 0.49 1.23 16 28 O -0.38 -12.12 9.22 -148.98 -1.37 -13.49 16 29 H 0.05 1.83 7.69 -2.39 -0.02 1.81 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.38 20.91 7.21 -92.70 -0.67 20.24 16 33 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.07 2.99 7.12 -2.39 -0.02 2.98 16 35 H 0.06 2.60 7.28 -2.38 -0.02 2.58 16 36 H 0.09 0.84 4.29 -2.39 -0.01 0.83 16 37 H 0.12 0.18 7.11 -2.39 -0.02 0.16 16 38 H 0.06 0.86 7.42 -2.39 -0.02 0.84 16 39 H 0.05 0.95 7.57 -2.38 -0.02 0.93 16 40 H 0.12 0.43 6.78 -2.39 -0.02 0.42 16 41 H 0.09 1.11 4.60 -2.38 -0.01 1.09 16 42 H 0.12 0.57 6.64 -2.39 -0.02 0.55 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.12 0.48 6.80 -2.38 -0.02 0.46 16 45 H 0.15 1.63 2.99 -2.39 -0.01 1.62 16 46 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 47 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.07 1.13 7.53 -2.38 -0.02 1.11 16 Total: -1.00 -82.82 367.40 4.54 -78.28 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.32 Total: 26.75 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.77 Total: 12.57 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -3.55 Total: -118.08 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.42 Total: -37.73 kcal Atomic # 9 Polarization: -12.62 SS G_CDS: 1.39 Total: -11.23 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -82.82 4.54 -78.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485649034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.311 kcal (2) G-P(sol) polarization free energy of solvation -82.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds