Wall clock time and date at job start Tue Mar 31 2020 17:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47128 * 2 1 4 4 N 1.46500 * 109.46898 * 239.99751 * 2 1 3 5 5 C 1.36941 * 120.00190 * 85.00281 * 4 2 1 6 6 H 1.07998 * 119.99213 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00007 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00465 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99484 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47046 * 90.00564 * 9 7 5 11 11 H 1.48507 * 109.47042 * 210.00117 * 9 7 5 12 12 H 1.48495 * 109.47426 * 330.00066 * 9 7 5 13 13 C 1.52995 * 109.46926 * 120.00242 * 2 1 3 14 14 H 1.08999 * 109.51676 * 174.90019 * 13 2 1 15 15 C 1.53294 * 109.51122 * 294.99742 * 13 2 1 16 16 N 1.47158 * 108.38601 * 172.27856 * 15 13 2 17 17 C 1.34777 * 120.98094 * 129.44270 * 16 15 13 18 18 O 1.21282 * 120.00048 * 4.67587 * 17 16 15 19 19 C 1.50705 * 119.99869 * 184.95406 * 17 16 15 20 20 C 1.53004 * 109.46539 * 299.69110 * 19 17 16 21 21 C 1.52993 * 109.47300 * 59.69021 * 19 17 16 22 22 C 1.52993 * 109.47099 * 179.69462 * 19 17 16 23 23 C 1.53001 * 109.47066 * 179.97438 * 22 19 17 24 24 F 1.39904 * 109.47196 * 299.99690 * 22 19 17 25 25 F 1.39905 * 109.47462 * 59.99814 * 22 19 17 26 26 C 1.47145 * 118.03545 * 309.71461 * 16 15 13 27 27 C 1.52889 * 108.60772 * 50.22737 * 26 16 15 28 28 O 1.42957 * 109.29560 * 307.93647 * 27 26 16 29 29 H 1.08999 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47470 * 299.99857 * 1 2 3 31 31 H 1.09004 * 109.47342 * 60.00147 * 1 2 3 32 32 H 0.97000 * 120.00261 * 264.99662 * 4 2 1 33 33 H 0.96991 * 120.00117 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.68495 * 52.55392 * 15 13 2 35 35 H 1.09000 * 109.68250 * 292.00054 * 15 13 2 36 36 H 1.08997 * 109.47268 * 51.37378 * 20 19 17 37 37 H 1.09000 * 109.46499 * 171.36266 * 20 19 17 38 38 H 1.08994 * 109.47318 * 291.36143 * 20 19 17 39 39 H 1.09005 * 109.46777 * 75.85647 * 21 19 17 40 40 H 1.08993 * 109.47441 * 195.85785 * 21 19 17 41 41 H 1.09000 * 109.47421 * 315.86135 * 21 19 17 42 42 H 1.08998 * 109.47086 * 60.00251 * 23 22 19 43 43 H 1.09004 * 109.47108 * 180.02562 * 23 22 19 44 44 H 1.08999 * 109.46937 * 299.99802 * 23 22 19 45 45 H 1.09003 * 109.68607 * 170.00627 * 26 16 15 46 46 H 1.08999 * 109.68288 * 290.56393 * 26 16 15 47 47 H 1.08994 * 109.58189 * 187.92078 * 27 26 16 48 48 H 1.08999 * 109.40487 * 67.84239 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3758 6 1 1.8919 1.0402 -2.4243 7 6 2.6123 -0.6619 -3.5090 8 7 2.9252 -1.9389 -3.4499 9 14 2.7914 0.2702 -5.1179 10 1 4.1537 0.8551 -5.2021 11 1 2.5814 -0.6611 -6.2555 12 1 1.7814 1.3573 -5.1753 13 6 2.0399 -0.7213 1.2492 14 1 3.1261 -0.8015 1.2055 15 6 1.6349 0.0697 2.4983 16 7 1.9708 -0.7330 3.6851 17 6 2.6783 -0.2039 4.7029 18 8 2.9751 0.9720 4.6884 19 6 3.1060 -1.0748 5.8561 20 6 1.8685 -1.6606 6.5390 21 6 3.9882 -2.2117 5.3368 22 6 3.8952 -0.2360 6.8633 23 6 4.3289 -1.1201 8.0343 24 9 5.0268 0.2997 6.2388 25 9 3.0885 0.8036 7.3382 26 6 1.5167 -2.1320 3.7250 27 6 1.9229 -2.8142 2.4184 28 8 1.4668 -2.0294 1.3141 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 3.2485 -2.3962 -4.2419 34 1 0.5625 0.2640 2.4781 35 1 2.1791 1.0137 2.5275 36 1 1.2280 -2.1282 5.7912 37 1 2.1767 -2.4069 7.2711 38 1 1.3193 -0.8642 7.0411 39 1 4.9817 -1.8255 5.1088 40 1 4.0660 -2.9880 6.0979 41 1 3.5456 -2.6316 4.4335 42 1 4.9574 -1.9303 7.6646 43 1 4.8908 -0.5224 8.7521 44 1 3.4471 -1.5371 8.5207 45 1 1.9826 -2.6455 4.5661 46 1 0.4323 -2.1632 3.8303 47 1 1.4747 -3.8065 2.3697 48 1 3.0086 -2.9028 2.3784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485649035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:10 Heat of formation + Delta-G solvation = -171.914565 kcal Electronic energy + Delta-G solvation = -31516.019692 eV Core-core repulsion = 27049.140659 eV Total energy + Delta-G solvation = -4466.879033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.95717 -47.95730 -41.94595 -39.83764 -37.54044 -36.91771 -35.67458 -34.33353 -32.10517 -30.88568 -30.06691 -28.62174 -28.44381 -26.46773 -25.95533 -24.95559 -23.94745 -21.97963 -21.10941 -20.43396 -19.31420 -18.39323 -18.31439 -18.08345 -17.39159 -17.05214 -16.91671 -16.60484 -16.36857 -16.17971 -15.85384 -15.43940 -15.12719 -15.07073 -14.63966 -14.58678 -14.42721 -14.31890 -14.02308 -13.84914 -13.73046 -13.53883 -13.52171 -13.42215 -13.08341 -12.86924 -12.84722 -12.70101 -12.54375 -12.43565 -12.34173 -12.31837 -12.19110 -11.85701 -11.71448 -11.65976 -11.50237 -11.19341 -10.94692 -10.67074 -9.66261 -9.01874 -7.93231 -5.21897 1.37140 1.46739 1.48376 1.56632 1.64735 2.55765 2.60633 2.75815 3.00584 3.17101 3.35424 3.40307 3.53619 3.66190 3.88337 3.88903 3.93095 3.96514 3.98900 4.07590 4.26025 4.33279 4.40897 4.47084 4.56832 4.58776 4.59607 4.61331 4.73686 4.74929 4.77045 4.77956 4.82568 4.92295 4.99394 5.07024 5.16367 5.20407 5.21182 5.24986 5.50512 5.59820 6.16151 6.23241 6.28833 6.90807 7.34967 8.09703 8.35298 9.30202 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.002816 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.284705 B = 9941.191416 C =10156.508925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.054 0.946 4 N -0.731 5.731 5 C -0.241 4.241 6 H 0.075 0.925 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.971 3.029 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.270 1.270 13 C 0.094 3.906 14 H 0.038 0.962 15 C 0.092 3.908 16 N -0.606 5.606 17 C 0.513 3.487 18 O -0.575 6.575 19 C -0.119 4.119 20 C -0.162 4.162 21 C -0.161 4.161 22 C 0.291 3.709 23 C -0.189 4.189 24 F -0.217 7.217 25 F -0.213 7.213 26 C 0.052 3.948 27 C 0.033 3.967 28 O -0.380 6.380 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.376 0.624 33 H 0.251 0.749 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.119 0.881 45 H 0.147 0.853 46 H 0.099 0.901 47 H 0.135 0.865 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -6.715 28.127 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 H 0.071 0.929 4 N -0.372 5.372 5 C -0.373 4.373 6 H 0.093 0.907 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.195 1.195 13 C 0.035 3.965 14 H 0.056 0.944 15 C -0.031 4.031 16 N -0.339 5.339 17 C 0.302 3.698 18 O -0.454 6.454 19 C -0.123 4.123 20 C -0.218 4.218 21 C -0.217 4.217 22 C 0.255 3.745 23 C -0.246 4.246 24 F -0.198 7.198 25 F -0.195 7.195 26 C -0.069 4.069 27 C -0.044 4.044 28 O -0.298 6.298 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.139 0.861 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.102 0.898 44 H 0.138 0.862 45 H 0.164 0.836 46 H 0.117 0.883 47 H 0.153 0.847 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.089 -5.967 27.862 28.571 hybrid contribution 0.641 0.902 -1.387 1.774 sum -1.448 -5.065 26.475 26.994 Atomic orbital electron populations 1.22199 0.96755 1.01315 1.00390 1.20409 0.94006 0.94340 0.84590 0.92852 1.42501 1.78338 1.10469 1.05885 1.19629 1.35094 0.94162 0.88380 0.90749 1.25532 1.02929 0.96900 1.01357 1.69825 1.52492 1.10138 1.29374 0.85170 0.77806 0.77474 0.79493 1.21582 1.22099 1.19495 1.22491 0.95862 0.83991 0.94178 0.94364 1.22223 1.02261 0.94973 0.83670 1.48099 1.54184 1.13831 1.17778 1.21006 0.76962 0.87882 0.83938 1.90746 1.56701 1.18670 1.79275 1.21962 1.00400 0.97018 0.92908 1.22460 0.93988 1.02620 1.02744 1.22369 0.98642 0.96313 1.04425 1.21425 0.77554 0.82918 0.92599 1.22934 1.05990 1.00403 0.95227 1.92980 1.53538 1.88410 1.84877 1.92974 1.74425 1.62813 1.89243 1.23307 1.02588 0.80206 1.00817 1.23251 0.99790 0.96156 0.85160 1.88059 1.67659 1.25516 1.48587 0.93178 0.91324 0.94489 0.79155 0.94069 0.88874 0.90213 0.88237 0.86148 0.92029 0.92420 0.85654 0.89576 0.86729 0.89812 0.86249 0.83627 0.88284 0.84680 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.06 71.98 0.65 -4.72 16 2 C 0.18 7.21 2.77 44.99 0.12 7.33 16 3 H 0.05 2.23 8.08 -2.39 -0.02 2.21 16 4 N -0.73 -38.18 5.10 -322.95 -1.65 -39.83 16 5 C -0.24 -13.72 9.93 84.03 0.83 -12.88 16 6 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 8 N -0.97 -60.22 13.06 21.65 0.28 -59.93 16 9 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 11 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.09 3.27 2.60 30.69 0.08 3.35 16 14 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 15 C 0.09 2.73 5.81 86.35 0.50 3.24 16 16 N -0.61 -14.73 3.00 -818.12 -2.46 -17.19 16 17 C 0.51 13.95 6.26 87.66 0.55 14.50 16 18 O -0.58 -21.68 14.33 -3.04 -0.04 -21.73 16 19 C -0.12 -1.98 0.24 -52.93 -0.01 -2.00 16 20 C -0.16 -1.38 7.44 71.98 0.54 -0.84 16 21 C -0.16 -1.80 7.22 71.98 0.52 -1.28 16 22 C 0.29 5.90 1.15 30.59 0.04 5.93 16 23 C -0.19 -1.65 8.72 71.98 0.63 -1.02 16 24 F -0.22 -6.15 15.40 44.97 0.69 -5.45 16 25 F -0.21 -5.69 15.48 44.97 0.70 -5.00 16 26 C 0.05 0.79 4.00 86.22 0.34 1.14 16 27 C 0.03 0.68 6.76 71.95 0.49 1.17 16 28 O -0.38 -12.17 9.25 -148.98 -1.38 -13.55 16 29 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 30 H 0.07 2.02 6.42 -2.39 -0.02 2.01 16 31 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.38 21.24 7.59 -92.71 -0.70 20.53 16 33 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.09 2.53 6.28 -2.39 -0.01 2.51 16 35 H 0.08 2.69 7.12 -2.39 -0.02 2.68 16 36 H 0.10 0.62 4.58 -2.39 -0.01 0.61 16 37 H 0.12 0.07 6.76 -2.39 -0.02 0.05 16 38 H 0.06 0.73 7.57 -2.39 -0.02 0.72 16 39 H 0.06 0.90 7.42 -2.38 -0.02 0.88 16 40 H 0.13 0.27 7.14 -2.39 -0.02 0.26 16 41 H 0.09 0.95 4.32 -2.39 -0.01 0.94 16 42 H 0.11 0.49 6.81 -2.39 -0.02 0.48 16 43 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.12 0.38 6.63 -2.39 -0.02 0.36 16 45 H 0.15 1.18 2.99 -2.39 -0.01 1.18 16 46 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16 47 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.05 1.07 7.52 -2.39 -0.02 1.05 16 Total: -1.00 -82.59 365.53 4.21 -78.38 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.29 Total: 25.15 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 5.75 Total: 10.01 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -3.82 Total: -116.95 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.42 Total: -35.28 kcal Atomic # 9 Polarization: -11.84 SS G_CDS: 1.39 Total: -10.45 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -82.59 4.21 -78.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485649035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.538 kcal (2) G-P(sol) polarization free energy of solvation -82.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds