Wall clock time and date at job start Tue Mar 31 2020 18:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 O 1.42891 * 109.47336 * 65.00248 * 4 3 2 6 6 C 1.42900 * 114.00050 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47178 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47339 * 64.99691 * 7 6 5 9 9 C 1.36936 * 120.00107 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99774 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00058 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00190 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00051 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46846 * 59.99806 * 13 11 9 15 15 H 1.48502 * 109.47225 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47272 * 299.99736 * 13 11 9 17 17 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 18 18 O 1.21279 * 120.00410 * 179.97438 * 17 2 1 19 19 C 1.50703 * 119.99541 * 359.97438 * 17 2 1 20 20 C 1.53000 * 109.46653 * 179.97438 * 19 17 2 21 21 H 1.09001 * 110.01534 * 54.30609 * 20 19 17 22 22 C 1.54273 * 110.03179 * 175.68949 * 20 19 17 23 23 C 1.54889 * 104.19713 * 142.89626 * 22 20 19 24 24 C 1.54888 * 102.74601 * 322.06065 * 23 22 20 25 25 C 1.53872 * 110.03728 * 292.90953 * 20 19 17 26 26 F 1.39901 * 110.03123 * 359.97438 * 25 20 19 27 27 F 1.39898 * 110.03353 * 121.43113 * 25 20 19 28 28 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.09004 * 109.46637 * 185.00104 * 4 3 2 34 34 H 1.08997 * 109.47081 * 304.99522 * 4 3 2 35 35 H 1.09003 * 109.46711 * 299.99391 * 6 5 4 36 36 H 1.08995 * 109.47538 * 59.99419 * 6 5 4 37 37 H 1.08996 * 109.47215 * 184.99827 * 7 6 5 38 38 H 1.08998 * 109.47115 * 304.99747 * 7 6 5 39 39 H 0.97005 * 119.99965 * 359.97438 * 8 7 6 40 40 H 0.96995 * 120.00092 * 180.02562 * 12 11 9 41 41 H 1.08996 * 109.47057 * 299.99739 * 19 17 2 42 42 H 1.08996 * 109.47084 * 60.00703 * 19 17 2 43 43 H 1.08997 * 110.48591 * 261.57749 * 22 20 19 44 44 H 1.09002 * 110.48338 * 24.21774 * 22 20 19 45 45 H 1.09001 * 110.75342 * 80.37081 * 23 22 20 46 46 H 1.08994 * 110.75330 * 203.74441 * 23 22 20 47 47 H 1.09001 * 110.48376 * 156.61769 * 24 23 22 48 48 H 1.08993 * 110.48861 * 279.12574 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 8 3.3210 0.7725 2.0813 6 6 3.6241 1.0933 3.4404 7 6 4.5552 0.0269 4.0207 8 7 5.8399 0.0653 3.3177 9 6 6.8380 -0.8048 3.6670 10 1 6.6781 -1.5190 4.4612 11 6 8.0554 -0.7680 3.0012 12 7 8.2504 0.1028 2.0337 13 14 9.4171 -1.9545 3.4783 14 1 8.9464 -3.3501 3.2888 15 1 10.6064 -1.7131 2.6224 16 1 9.7807 -1.7438 4.9026 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 6 2.3796 -3.6352 -0.0018 21 1 3.0769 -3.5308 0.8295 22 6 1.6246 -4.9761 0.1071 23 6 2.4283 -5.9395 -0.8012 24 6 2.8331 -5.0314 -1.9889 25 6 3.1489 -3.6696 -1.3340 26 9 2.7186 -2.6280 -2.1629 27 9 4.5231 -3.5581 -1.0968 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5139 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 2.9182 2.6959 1.4437 34 1 1.5063 1.7549 1.9815 35 1 4.1139 2.0662 3.4835 36 1 2.7020 1.1248 4.0207 37 1 4.7153 0.2224 5.0810 38 1 4.1026 -0.9569 3.8970 39 1 5.9834 0.7066 2.6041 40 1 9.1009 0.1282 1.5682 41 1 0.7591 -2.5302 0.8897 42 1 0.7585 -2.5298 -0.8903 43 1 1.6266 -5.3324 1.1372 44 1 0.6034 -4.8697 -0.2588 45 1 3.3111 -6.3132 -0.2824 46 1 1.8009 -6.7633 -1.1412 47 1 3.7169 -5.4280 -2.4885 48 1 2.0079 -4.9358 -2.6946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486497988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:39 Heat of formation + Delta-G solvation = -168.286928 kcal Electronic energy + Delta-G solvation = -31277.769810 eV Core-core repulsion = 26811.048083 eV Total energy + Delta-G solvation = -4466.721727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.56315 -46.60076 -39.72690 -37.76003 -37.20783 -35.35665 -34.17538 -32.11376 -31.24195 -29.76692 -27.95618 -27.42992 -26.68912 -25.68566 -23.33640 -22.52737 -21.39152 -20.96432 -20.28615 -18.88734 -17.50715 -17.02507 -16.92015 -16.71793 -16.22685 -16.10219 -15.76742 -15.43596 -15.01999 -14.48793 -14.34172 -14.08806 -13.89409 -13.60859 -13.28782 -13.09876 -13.06624 -12.87705 -12.79365 -12.75804 -12.64816 -12.40680 -12.10100 -11.84820 -11.67916 -11.55742 -11.41850 -11.41698 -11.31176 -11.16584 -10.87360 -10.73922 -10.63224 -10.37427 -10.34759 -9.87159 -9.52038 -9.36615 -9.04361 -8.66765 -8.45098 -6.66561 -5.52300 -2.79596 3.05776 3.13015 3.58215 3.62004 3.63669 3.84722 3.97350 4.15415 4.21071 4.32785 4.70040 4.78839 4.83648 4.91740 4.99815 5.09678 5.16152 5.23146 5.26606 5.27657 5.36665 5.39522 5.44669 5.49230 5.51191 5.55566 5.60485 5.64983 5.66010 5.74614 5.79630 5.80161 5.87055 5.97090 6.08115 6.14464 6.19445 6.54095 6.65388 6.76736 6.92770 7.58104 7.80592 7.88339 8.60709 8.65814 9.76955 10.37387 10.73197 11.70723 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.008882 B = 0.004690 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.580032 B = 5969.317708 C = 8100.740658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.622 5.622 3 C 0.120 3.880 4 C 0.044 3.956 5 O -0.352 6.352 6 C 0.057 3.943 7 C 0.158 3.842 8 N -0.722 5.722 9 C -0.236 4.236 10 H 0.066 0.934 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.904 3.096 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.288 1.288 17 C 0.507 3.493 18 O -0.483 6.483 19 C -0.128 4.128 20 C -0.121 4.121 21 H 0.113 0.887 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.165 4.165 25 C 0.294 3.706 26 F -0.201 7.201 27 F -0.183 7.183 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.028 0.972 38 H 0.021 0.979 39 H 0.387 0.613 40 H 0.253 0.747 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.960 -5.476 -7.269 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.359 5.359 3 C -0.003 4.003 4 C -0.035 4.035 5 O -0.270 6.270 6 C -0.020 4.020 7 C 0.030 3.970 8 N -0.367 5.367 9 C -0.367 4.367 10 H 0.084 0.916 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.736 3.264 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.215 1.215 17 C 0.293 3.707 18 O -0.354 6.354 19 C -0.168 4.168 20 C -0.141 4.141 21 H 0.132 0.868 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.203 4.203 25 C 0.258 3.742 26 F -0.182 7.182 27 F -0.164 7.164 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.221 0.779 40 H 0.063 0.937 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.071 -5.737 -7.310 24.872 hybrid contribution 0.633 0.125 0.113 0.655 sum -22.439 -5.612 -7.197 24.224 Atomic orbital electron populations 1.21710 0.80405 1.02818 1.01248 1.47679 1.06107 1.06078 1.76017 1.21443 0.98488 0.84810 0.95521 1.22841 0.93329 0.93166 0.94150 1.88243 1.66358 1.47507 1.24890 1.22766 0.97096 0.99220 0.82916 1.20615 0.86911 0.95280 0.94161 1.42229 1.09327 1.42927 1.42220 1.19141 0.92104 1.11300 1.14198 0.91570 1.24702 0.98011 0.99492 0.98679 1.69668 1.24408 1.38092 1.25653 0.86306 0.81918 0.80942 0.77260 1.21371 1.21768 1.21486 1.20398 0.88492 0.84860 0.76919 1.90927 1.12956 1.86355 1.45150 1.21672 0.98708 0.92214 1.04234 1.22649 0.98276 0.95339 0.97799 0.86833 1.22420 0.98854 0.93034 1.01156 1.22464 1.00809 0.97431 0.95320 1.23410 1.04095 0.93440 0.99345 1.21568 0.77655 0.85252 0.89743 1.92952 1.89458 1.61756 1.73984 1.93098 1.31898 1.96494 1.94895 0.93000 0.91467 0.91362 0.88722 0.89782 0.93025 0.94365 0.93667 0.94481 0.95471 0.96077 0.77864 0.93693 0.88448 0.88753 0.90047 0.90630 0.90235 0.90137 0.89106 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.24 59.85 0.61 1.27 16 2 N -0.62 -8.20 2.86 -181.57 -0.52 -8.72 16 3 C 0.12 1.65 5.86 -4.04 -0.02 1.62 16 4 C 0.04 0.64 6.28 37.16 0.23 0.87 16 5 O -0.35 -7.07 9.08 -42.91 -0.39 -7.46 16 6 C 0.06 1.08 6.07 37.16 0.23 1.31 16 7 C 0.16 3.65 6.65 -4.04 -0.03 3.62 16 8 N -0.72 -20.81 5.55 -59.91 -0.33 -21.14 16 9 C -0.24 -7.31 9.99 -15.06 -0.15 -7.46 16 10 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -30.87 13.06 55.49 0.72 -30.14 16 13 Si 0.90 24.28 29.55 -169.99 -5.02 19.26 16 14 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 15 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 C 0.51 8.25 6.17 -10.98 -0.07 8.18 16 18 O -0.48 -10.80 13.30 -2.12 -0.03 -10.83 16 19 C -0.13 -1.50 3.19 -27.88 -0.09 -1.59 16 20 C -0.12 -1.58 2.40 -89.50 -0.21 -1.80 16 21 H 0.11 1.87 7.82 -51.93 -0.41 1.46 16 22 C -0.12 -1.01 6.36 -25.07 -0.16 -1.17 16 23 C -0.12 -1.04 6.91 -24.74 -0.17 -1.21 16 24 C -0.16 -1.71 6.40 -25.01 -0.16 -1.87 16 25 C 0.29 4.42 1.79 -25.56 -0.05 4.37 16 26 F -0.20 -3.27 14.05 2.25 0.03 -3.24 16 27 F -0.18 -3.68 16.74 2.25 0.04 -3.64 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.07 0.45 6.44 -51.93 -0.33 0.11 16 31 H 0.09 1.64 7.42 -51.93 -0.39 1.25 16 32 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.39 11.93 7.67 -40.82 -0.31 11.62 16 40 H 0.25 8.11 8.31 -40.82 -0.34 7.77 16 41 H 0.10 0.90 7.40 -51.93 -0.38 0.51 16 42 H 0.09 0.89 7.63 -51.93 -0.40 0.50 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 48 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -40.39 391.48 -7.81 -48.21 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.08 Total: 6.16 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -0.13 Total: 5.65 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.13 Total: -60.00 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.42 Total: -18.29 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.07 Total: -6.88 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.02 Total: 19.26 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -40.39 -7.81 -48.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486497988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.081 kcal (2) G-P(sol) polarization free energy of solvation -40.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds