Wall clock time and date at job start Tue Mar 31 2020 18:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 O 1.42891 * 109.47336 * 65.00248 * 4 3 2 6 6 C 1.42900 * 114.00050 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47178 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47339 * 64.99691 * 7 6 5 9 9 C 1.36936 * 120.00107 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99774 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00058 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00190 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00051 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46846 * 59.99806 * 13 11 9 15 15 H 1.48502 * 109.47225 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47272 * 299.99736 * 13 11 9 17 17 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 18 18 O 1.21279 * 120.00410 * 179.97438 * 17 2 1 19 19 C 1.50703 * 119.99541 * 359.97438 * 17 2 1 20 20 C 1.53000 * 109.46653 * 179.97438 * 19 17 2 21 21 H 1.09001 * 110.01534 * 54.30609 * 20 19 17 22 22 C 1.54273 * 110.03179 * 175.68949 * 20 19 17 23 23 C 1.54889 * 104.19713 * 142.89626 * 22 20 19 24 24 C 1.54888 * 102.74601 * 322.06065 * 23 22 20 25 25 C 1.53872 * 110.03728 * 292.90953 * 20 19 17 26 26 F 1.39901 * 110.03123 * 359.97438 * 25 20 19 27 27 F 1.39898 * 110.03353 * 121.43113 * 25 20 19 28 28 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.09004 * 109.46637 * 185.00104 * 4 3 2 34 34 H 1.08997 * 109.47081 * 304.99522 * 4 3 2 35 35 H 1.09003 * 109.46711 * 299.99391 * 6 5 4 36 36 H 1.08995 * 109.47538 * 59.99419 * 6 5 4 37 37 H 1.08996 * 109.47215 * 184.99827 * 7 6 5 38 38 H 1.08998 * 109.47115 * 304.99747 * 7 6 5 39 39 H 0.97005 * 119.99965 * 359.97438 * 8 7 6 40 40 H 0.96995 * 120.00092 * 180.02562 * 12 11 9 41 41 H 1.08996 * 109.47057 * 299.99739 * 19 17 2 42 42 H 1.08996 * 109.47084 * 60.00703 * 19 17 2 43 43 H 1.08997 * 110.48591 * 261.57749 * 22 20 19 44 44 H 1.09002 * 110.48338 * 24.21774 * 22 20 19 45 45 H 1.09001 * 110.75342 * 80.37081 * 23 22 20 46 46 H 1.08994 * 110.75330 * 203.74441 * 23 22 20 47 47 H 1.09001 * 110.48376 * 156.61769 * 24 23 22 48 48 H 1.08993 * 110.48861 * 279.12574 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 8 3.3210 0.7725 2.0813 6 6 3.6241 1.0933 3.4404 7 6 4.5552 0.0269 4.0207 8 7 5.8399 0.0653 3.3177 9 6 6.8380 -0.8048 3.6670 10 1 6.6781 -1.5190 4.4612 11 6 8.0554 -0.7680 3.0012 12 7 8.2504 0.1028 2.0337 13 14 9.4171 -1.9545 3.4783 14 1 8.9464 -3.3501 3.2888 15 1 10.6064 -1.7131 2.6224 16 1 9.7807 -1.7438 4.9026 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 6 2.3796 -3.6352 -0.0018 21 1 3.0769 -3.5308 0.8295 22 6 1.6246 -4.9761 0.1071 23 6 2.4283 -5.9395 -0.8012 24 6 2.8331 -5.0314 -1.9889 25 6 3.1489 -3.6696 -1.3340 26 9 2.7186 -2.6280 -2.1629 27 9 4.5231 -3.5581 -1.0968 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5139 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 2.9182 2.6959 1.4437 34 1 1.5063 1.7549 1.9815 35 1 4.1139 2.0662 3.4835 36 1 2.7020 1.1248 4.0207 37 1 4.7153 0.2224 5.0810 38 1 4.1026 -0.9569 3.8970 39 1 5.9834 0.7066 2.6041 40 1 9.1009 0.1282 1.5682 41 1 0.7591 -2.5302 0.8897 42 1 0.7585 -2.5298 -0.8903 43 1 1.6266 -5.3324 1.1372 44 1 0.6034 -4.8697 -0.2588 45 1 3.3111 -6.3132 -0.2824 46 1 1.8009 -6.7633 -1.1412 47 1 3.7169 -5.4280 -2.4885 48 1 2.0079 -4.9358 -2.6946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486497988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:38 Heat of formation + Delta-G solvation = -197.636972 kcal Electronic energy + Delta-G solvation = -31279.042524 eV Core-core repulsion = 26811.048083 eV Total energy + Delta-G solvation = -4467.994441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.82014 -47.92475 -40.86397 -39.03590 -38.26215 -36.71551 -36.09039 -33.52037 -32.92031 -31.04831 -29.29836 -28.76650 -27.53862 -26.67391 -25.54700 -23.64826 -22.81253 -22.18062 -21.32439 -19.95969 -19.26737 -18.65685 -18.09604 -17.89052 -17.45588 -17.26940 -16.96383 -16.83666 -16.43008 -16.08091 -15.63510 -15.37689 -15.11249 -15.01650 -14.76487 -14.59783 -14.36762 -14.28578 -14.20742 -13.82142 -13.72230 -13.30749 -13.25892 -13.14473 -13.04028 -12.81902 -12.73643 -12.57970 -12.52447 -12.42264 -12.19857 -12.14903 -12.13140 -11.90685 -11.69327 -11.59419 -11.41056 -10.97653 -10.64461 -10.41033 -9.50916 -9.00062 -7.94321 -5.23338 1.39654 1.46959 1.52146 1.91281 2.15425 2.54504 2.85844 2.88215 3.04797 3.27763 3.38011 3.39082 3.76626 3.93940 3.96580 4.08354 4.12826 4.21895 4.28677 4.31586 4.32849 4.36147 4.39790 4.44351 4.48027 4.54558 4.58963 4.60301 4.62956 4.69782 4.79826 4.87354 4.94446 4.98050 5.00037 5.05542 5.09331 5.10129 5.16412 5.34735 5.42940 5.69703 6.25717 6.46114 6.57234 7.31468 7.48879 8.09439 8.32721 9.29852 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.008882 B = 0.004690 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.580032 B = 5969.317708 C = 8100.740658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.620 5.620 3 C 0.119 3.881 4 C 0.040 3.960 5 O -0.392 6.392 6 C 0.066 3.934 7 C 0.153 3.847 8 N -0.739 5.739 9 C -0.248 4.248 10 H 0.075 0.925 11 C -0.081 4.081 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.282 1.282 15 H -0.293 1.293 16 H -0.267 1.267 17 C 0.492 3.508 18 O -0.563 6.563 19 C -0.120 4.120 20 C -0.123 4.123 21 H 0.062 0.938 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.155 4.155 25 C 0.267 3.733 26 F -0.213 7.213 27 F -0.226 7.226 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.130 0.870 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.008 0.992 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.062 0.938 46 H 0.118 0.882 47 H 0.084 0.916 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.922 -6.631 -6.645 29.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.355 5.355 3 C -0.004 4.004 4 C -0.038 4.038 5 O -0.312 6.312 6 C -0.010 4.010 7 C 0.026 3.974 8 N -0.381 5.381 9 C -0.380 4.380 10 H 0.093 0.907 11 C -0.273 4.273 12 N -0.622 5.622 13 Si 0.806 3.194 14 H -0.208 1.208 15 H -0.219 1.219 16 H -0.193 1.193 17 C 0.281 3.719 18 O -0.440 6.440 19 C -0.159 4.159 20 C -0.143 4.143 21 H 0.081 0.919 22 C -0.142 4.142 23 C -0.156 4.156 24 C -0.193 4.193 25 C 0.231 3.769 26 F -0.194 7.194 27 F -0.208 7.208 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.108 0.892 44 H 0.131 0.869 45 H 0.081 0.919 46 H 0.137 0.863 47 H 0.103 0.897 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -27.135 -6.882 -6.645 28.772 hybrid contribution 1.751 0.575 -0.102 1.846 sum -25.384 -6.308 -6.746 27.012 Atomic orbital electron populations 1.22081 0.76666 1.04927 1.03158 1.47859 1.08373 1.04933 1.74313 1.21478 0.97366 0.86517 0.95071 1.23099 0.93890 0.92383 0.94422 1.88222 1.67984 1.49530 1.25433 1.22631 0.97900 0.97149 0.83365 1.20839 0.85434 0.96291 0.94815 1.42464 1.11129 1.42251 1.42259 1.19629 0.92869 1.11421 1.14058 0.90708 1.25683 1.00898 1.01725 0.98959 1.69869 1.24838 1.40265 1.27221 0.85153 0.78189 0.78346 0.77745 1.20823 1.21924 1.19281 1.21319 0.87992 0.87055 0.75527 1.90903 1.16489 1.87606 1.48970 1.21753 0.98205 0.88937 1.07025 1.22656 0.98017 0.98881 0.94723 0.91920 1.22464 0.99887 0.89817 1.02030 1.22524 1.00873 0.97985 0.94223 1.23450 1.04900 0.90575 1.00374 1.22524 0.75729 0.87065 0.91535 1.92905 1.89307 1.62825 1.74352 1.92998 1.35622 1.96826 1.95316 0.91116 0.89304 0.89409 0.93852 0.85222 0.92432 0.90927 0.93787 0.90161 0.93649 0.97370 0.79725 0.94220 0.85279 0.85647 0.89209 0.86893 0.91895 0.86347 0.89690 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 10.24 127.77 1.31 2.18 16 2 N -0.62 -15.64 2.86 -846.74 -2.42 -18.05 16 3 C 0.12 3.25 5.86 86.38 0.51 3.75 16 4 C 0.04 1.13 6.28 71.98 0.45 1.58 16 5 O -0.39 -16.13 9.08 -141.64 -1.29 -17.42 16 6 C 0.07 2.49 6.07 71.98 0.44 2.92 16 7 C 0.15 7.16 6.65 86.38 0.57 7.74 16 8 N -0.74 -44.32 5.55 -343.45 -1.91 -46.22 16 9 C -0.25 -15.83 9.99 84.03 0.84 -14.99 16 10 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 11 C -0.08 -5.25 5.50 84.86 0.47 -4.78 16 12 N -0.97 -67.39 13.06 21.65 0.28 -67.11 16 13 Si 0.98 51.38 29.55 68.60 2.03 53.41 16 14 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 15 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 16 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 17 C 0.49 16.38 6.17 87.66 0.54 16.92 16 18 O -0.56 -27.36 13.30 4.32 0.06 -27.30 16 19 C -0.12 -2.62 3.19 29.85 0.10 -2.53 16 20 C -0.12 -3.26 2.40 -10.07 -0.02 -3.29 16 21 H 0.06 2.28 7.82 -2.39 -0.02 2.26 16 22 C -0.10 -1.53 6.36 31.67 0.20 -1.32 16 23 C -0.12 -1.75 6.91 31.88 0.22 -1.53 16 24 C -0.16 -3.07 6.40 31.71 0.20 -2.87 16 25 C 0.27 8.41 1.79 31.36 0.06 8.47 16 26 F -0.21 -7.22 14.05 44.97 0.63 -6.59 16 27 F -0.23 -10.10 16.74 44.97 0.75 -9.34 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.72 8.07 -2.39 -0.02 0.70 16 30 H 0.09 0.74 6.44 -2.38 -0.02 0.72 16 31 H 0.04 1.63 7.42 -2.39 -0.02 1.62 16 32 H 0.13 2.25 8.07 -2.38 -0.02 2.23 16 33 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.37 24.21 7.67 -92.70 -0.71 23.50 16 40 H 0.25 16.66 8.31 -92.71 -0.77 15.89 16 41 H 0.13 1.96 7.40 -2.39 -0.02 1.94 16 42 H 0.13 1.95 7.63 -2.39 -0.02 1.93 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.11 0.86 7.85 -2.39 -0.02 0.84 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 1.76 8.11 -2.39 -0.02 1.74 16 48 H 0.12 1.70 8.12 -2.39 -0.02 1.68 16 Total: -1.00 -98.70 391.48 4.26 -94.45 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.24 Total: 31.93 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.88 Total: 12.26 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -4.04 Total: -131.39 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.23 Total: -44.72 kcal Atomic # 9 Polarization: -17.32 SS G_CDS: 1.38 Total: -15.93 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.03 Total: 53.41 kcal Total: -98.70 4.26 -94.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486497988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.189 kcal (2) G-P(sol) polarization free energy of solvation -98.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds