Wall clock time and date at job start Tue Mar 31 2020 18:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99946 * 2 1 4 4 C 1.52999 * 109.47206 * 90.00093 * 3 2 1 5 5 O 1.42897 * 109.47174 * 64.99578 * 4 3 2 6 6 C 1.42902 * 113.99864 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47328 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47059 * 64.99617 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 C 1.34781 * 119.99949 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99344 * 180.02562 * 17 2 1 19 19 C 1.50692 * 120.00053 * 0.02562 * 17 2 1 20 20 C 1.53000 * 109.47186 * 179.97438 * 19 17 2 21 21 H 1.09001 * 110.01612 * 305.69816 * 20 19 17 22 22 C 1.54268 * 110.03202 * 184.31087 * 20 19 17 23 23 C 1.54897 * 104.19442 * 217.10447 * 22 20 19 24 24 C 1.54894 * 102.74890 * 37.94042 * 23 22 20 25 25 C 1.53873 * 110.03247 * 67.09180 * 20 19 17 26 26 F 1.39901 * 110.03146 * 238.56809 * 25 20 19 27 27 F 1.39898 * 110.03065 * 0.02562 * 25 20 19 28 28 H 1.09004 * 109.46865 * 90.00385 * 1 2 3 29 29 H 1.09003 * 109.47433 * 210.00119 * 1 2 3 30 30 H 1.08996 * 109.47026 * 330.00627 * 1 2 3 31 31 H 1.08998 * 109.47107 * 329.99545 * 3 2 1 32 32 H 1.09005 * 109.46466 * 209.99731 * 3 2 1 33 33 H 1.09006 * 109.46759 * 304.99897 * 4 3 2 34 34 H 1.08999 * 109.47205 * 184.99975 * 4 3 2 35 35 H 1.08997 * 109.47069 * 59.99874 * 6 5 4 36 36 H 1.09008 * 109.46887 * 300.00568 * 6 5 4 37 37 H 1.09004 * 109.47066 * 304.99885 * 7 6 5 38 38 H 1.08994 * 109.46974 * 185.00032 * 7 6 5 39 39 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 40 40 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 41 41 H 1.09000 * 109.47138 * 299.99722 * 19 17 2 42 42 H 1.08999 * 109.47028 * 59.99672 * 19 17 2 43 43 H 1.08998 * 110.48452 * 335.77767 * 22 20 19 44 44 H 1.08992 * 110.48941 * 98.29758 * 22 20 19 45 45 H 1.08997 * 110.75243 * 156.25574 * 23 22 20 46 46 H 1.08996 * 110.75558 * 279.44372 * 23 22 20 47 47 H 1.09003 * 110.48423 * 80.73334 * 24 23 22 48 48 H 1.08994 * 110.48957 * 203.37884 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 8 3.3209 0.7725 2.0814 6 6 3.6239 1.0934 3.4405 7 6 4.5559 0.0277 4.0206 8 7 5.8404 0.0673 3.3173 9 6 6.8413 -0.7980 3.6707 10 1 6.6821 -1.5125 4.4648 11 6 8.0605 -0.7567 3.0082 12 7 8.2546 0.1144 2.0408 13 14 9.4255 -1.9375 3.4897 14 1 8.9611 -3.3351 3.2995 15 1 10.6166 -1.6910 2.6378 16 1 9.7843 -1.7246 4.9148 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0010 19 6 1.3854 -2.4723 0.0005 20 6 2.3796 -3.6352 0.0005 21 1 3.0763 -3.5304 -0.8312 22 6 1.6245 -4.9760 -0.1084 23 6 2.4289 -5.9398 0.7989 24 6 2.8346 -5.0322 1.9868 25 6 3.1499 -3.6702 1.3321 26 9 4.5239 -3.5586 1.0940 27 9 2.7201 -2.6290 2.1618 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6084 2.0284 -0.5139 32 1 3.1499 1.1383 -0.5138 33 1 1.5061 1.7550 1.9815 34 1 2.9181 2.6960 1.4438 35 1 2.7017 1.1249 4.0207 36 1 4.1136 2.0664 3.4836 37 1 4.1040 -0.9565 3.8968 38 1 4.7159 0.2233 5.0809 39 1 5.9835 0.7092 2.6044 40 1 9.1063 0.1430 1.5776 41 1 0.7584 -2.5298 0.8903 42 1 0.7591 -2.5302 -0.8897 43 1 0.6036 -4.8697 0.2584 44 1 1.6237 -5.3308 -1.1390 45 1 1.8018 -6.7638 1.1390 46 1 3.3095 -6.3159 0.2782 47 1 2.0091 -4.9350 2.6919 48 1 3.7188 -5.4291 2.4855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486497989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:43 Heat of formation + Delta-G solvation = -166.010260 kcal Electronic energy + Delta-G solvation = -32062.496756 eV Core-core repulsion = 27595.873753 eV Total energy + Delta-G solvation = -4466.623003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.22000 -46.26577 -39.71542 -37.68766 -37.12535 -35.34221 -34.10517 -32.06739 -31.17413 -29.72227 -27.83412 -27.35305 -26.67105 -25.62470 -23.26984 -22.48877 -21.28488 -20.87882 -20.14051 -18.85901 -17.31725 -16.96007 -16.85223 -16.57241 -16.27402 -15.82062 -15.74997 -15.25522 -14.99725 -14.37680 -14.23260 -13.95805 -13.75228 -13.61968 -13.13200 -13.02986 -12.98180 -12.72037 -12.64568 -12.63079 -12.51321 -12.37155 -12.02712 -11.72471 -11.57067 -11.44411 -11.36485 -11.32189 -11.27732 -11.09325 -10.83522 -10.68739 -10.58799 -10.28108 -10.18532 -9.81328 -9.46097 -9.36072 -8.96498 -8.60035 -8.44840 -6.58705 -5.46424 -2.72322 3.02390 3.16103 3.61507 3.65040 3.66925 4.00140 4.09339 4.21519 4.36882 4.40779 4.75043 4.84222 4.95085 4.98472 4.98994 5.16467 5.19814 5.24505 5.30858 5.34824 5.38380 5.47566 5.49753 5.52403 5.56916 5.63196 5.65200 5.71645 5.74582 5.77981 5.86329 5.90385 5.93298 6.07259 6.11381 6.20284 6.23384 6.62137 6.66262 6.84442 7.06986 7.58159 7.88734 7.94600 8.60465 8.72015 9.83136 10.44321 10.80437 11.76962 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.009620 B = 0.005401 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.761657 B = 5182.712613 C = 7179.588602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.622 5.622 3 C 0.121 3.879 4 C 0.043 3.957 5 O -0.346 6.346 6 C 0.059 3.941 7 C 0.158 3.842 8 N -0.720 5.720 9 C -0.227 4.227 10 H 0.065 0.935 11 C -0.015 4.015 12 N -0.932 5.932 13 Si 0.902 3.098 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.289 1.289 17 C 0.507 3.493 18 O -0.483 6.483 19 C -0.129 4.129 20 C -0.121 4.121 21 H 0.106 0.894 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.167 4.167 25 C 0.296 3.704 26 F -0.180 7.180 27 F -0.189 7.189 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.043 0.957 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.387 0.613 40 H 0.252 0.748 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.018 -5.439 -6.022 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.359 5.359 3 C -0.002 4.002 4 C -0.036 4.036 5 O -0.264 6.264 6 C -0.018 4.018 7 C 0.030 3.970 8 N -0.365 5.365 9 C -0.359 4.359 10 H 0.083 0.917 11 C -0.210 4.210 12 N -0.581 5.581 13 Si 0.734 3.266 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.216 1.216 17 C 0.293 3.707 18 O -0.354 6.354 19 C -0.169 4.169 20 C -0.140 4.140 21 H 0.124 0.876 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.206 4.206 25 C 0.260 3.740 26 F -0.160 7.160 27 F -0.170 7.170 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.220 0.780 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.111 0.889 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.134 -5.704 -6.026 24.577 hybrid contribution 0.624 0.101 0.321 0.709 sum -22.510 -5.603 -5.705 23.888 Atomic orbital electron populations 1.21706 0.80423 1.02930 1.01123 1.47689 1.06104 1.06093 1.76001 1.21441 0.98349 0.84760 0.95650 1.22829 0.93445 0.93180 0.94151 1.88280 1.66165 1.47225 1.24767 1.22738 0.97025 0.99044 0.83014 1.20614 0.86872 0.95610 0.93883 1.42189 1.09176 1.42999 1.42091 1.19131 0.91767 1.11112 1.13877 0.91717 1.24666 0.97955 0.99576 0.98834 1.69673 1.24201 1.38279 1.25981 0.86325 0.81997 0.81044 0.77224 1.21420 1.21841 1.21579 1.20405 0.88489 0.84854 0.76928 1.90926 1.12939 1.86371 1.45166 1.21679 0.98746 0.92249 1.04209 1.22644 0.98053 0.95227 0.98103 0.87601 1.22411 0.98989 0.93195 1.00836 1.22448 1.00573 0.97422 0.95521 1.23433 1.04217 0.93717 0.99184 1.21412 0.77825 0.85502 0.89275 1.93123 1.31645 1.96478 1.94779 1.93019 1.89270 1.61120 1.73582 0.93040 0.91347 0.91477 0.89844 0.88780 0.94468 0.93159 0.94636 0.93883 0.95585 0.95741 0.77963 0.93854 0.88540 0.88736 0.90661 0.90365 0.90280 0.90445 0.88903 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.24 59.85 0.61 1.26 16 2 N -0.62 -8.10 2.86 -181.57 -0.52 -8.62 16 3 C 0.12 1.64 5.86 -4.04 -0.02 1.61 16 4 C 0.04 0.64 6.28 37.16 0.23 0.87 16 5 O -0.35 -7.18 9.07 -43.05 -0.39 -7.58 16 6 C 0.06 1.17 6.07 37.16 0.23 1.39 16 7 C 0.16 3.80 6.65 -4.04 -0.03 3.78 16 8 N -0.72 -21.20 5.55 -59.91 -0.33 -21.53 16 9 C -0.23 -7.18 9.99 -15.06 -0.15 -7.33 16 10 H 0.06 1.98 7.83 -52.49 -0.41 1.57 16 11 C -0.01 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -31.23 13.06 55.49 0.72 -30.51 16 13 Si 0.90 24.67 29.55 -169.99 -5.02 19.65 16 14 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 15 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 16 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 17 C 0.51 8.14 6.17 -10.99 -0.07 8.07 16 18 O -0.48 -10.68 13.29 -2.26 -0.03 -10.71 16 19 C -0.13 -1.49 3.19 -27.89 -0.09 -1.58 16 20 C -0.12 -1.57 2.40 -89.50 -0.21 -1.78 16 21 H 0.11 1.56 7.82 -51.93 -0.41 1.16 16 22 C -0.12 -1.00 6.36 -25.07 -0.16 -1.16 16 23 C -0.12 -1.13 6.91 -24.73 -0.17 -1.30 16 24 C -0.17 -2.09 6.41 -25.01 -0.16 -2.25 16 25 C 0.30 5.04 1.79 -25.56 -0.05 4.99 16 26 F -0.18 -4.09 16.74 2.25 0.04 -4.05 16 27 F -0.19 -3.72 14.05 2.25 0.03 -3.69 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.47 6.44 -51.93 -0.33 0.13 16 30 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.09 1.58 7.42 -51.93 -0.39 1.20 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.39 12.12 7.67 -40.82 -0.31 11.80 16 40 H 0.25 8.12 8.31 -40.82 -0.34 7.78 16 41 H 0.10 1.00 6.92 -51.93 -0.36 0.64 16 42 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 43 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 48 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -41.19 391.47 -7.82 -49.00 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.08 Total: 6.14 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.13 Total: 6.01 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.13 Total: -60.67 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.42 Total: -18.29 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.07 Total: -7.74 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.02 Total: 19.65 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -41.19 -7.82 -49.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486497989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.006 kcal (2) G-P(sol) polarization free energy of solvation -41.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds