Wall clock time and date at job start Tue Mar 31 2020 18:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99946 * 2 1 4 4 C 1.52999 * 109.47206 * 90.00093 * 3 2 1 5 5 O 1.42897 * 109.47174 * 64.99578 * 4 3 2 6 6 C 1.42902 * 113.99864 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47328 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47059 * 64.99617 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 C 1.34781 * 119.99949 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99344 * 180.02562 * 17 2 1 19 19 C 1.50692 * 120.00053 * 0.02562 * 17 2 1 20 20 C 1.53000 * 109.47186 * 179.97438 * 19 17 2 21 21 H 1.09001 * 110.01612 * 305.69816 * 20 19 17 22 22 C 1.54268 * 110.03202 * 184.31087 * 20 19 17 23 23 C 1.54897 * 104.19442 * 217.10447 * 22 20 19 24 24 C 1.54894 * 102.74890 * 37.94042 * 23 22 20 25 25 C 1.53873 * 110.03247 * 67.09180 * 20 19 17 26 26 F 1.39901 * 110.03146 * 238.56809 * 25 20 19 27 27 F 1.39898 * 110.03065 * 0.02562 * 25 20 19 28 28 H 1.09004 * 109.46865 * 90.00385 * 1 2 3 29 29 H 1.09003 * 109.47433 * 210.00119 * 1 2 3 30 30 H 1.08996 * 109.47026 * 330.00627 * 1 2 3 31 31 H 1.08998 * 109.47107 * 329.99545 * 3 2 1 32 32 H 1.09005 * 109.46466 * 209.99731 * 3 2 1 33 33 H 1.09006 * 109.46759 * 304.99897 * 4 3 2 34 34 H 1.08999 * 109.47205 * 184.99975 * 4 3 2 35 35 H 1.08997 * 109.47069 * 59.99874 * 6 5 4 36 36 H 1.09008 * 109.46887 * 300.00568 * 6 5 4 37 37 H 1.09004 * 109.47066 * 304.99885 * 7 6 5 38 38 H 1.08994 * 109.46974 * 185.00032 * 7 6 5 39 39 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 40 40 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 41 41 H 1.09000 * 109.47138 * 299.99722 * 19 17 2 42 42 H 1.08999 * 109.47028 * 59.99672 * 19 17 2 43 43 H 1.08998 * 110.48452 * 335.77767 * 22 20 19 44 44 H 1.08992 * 110.48941 * 98.29758 * 22 20 19 45 45 H 1.08997 * 110.75243 * 156.25574 * 23 22 20 46 46 H 1.08996 * 110.75558 * 279.44372 * 23 22 20 47 47 H 1.09003 * 110.48423 * 80.73334 * 24 23 22 48 48 H 1.08994 * 110.48957 * 203.37884 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 8 3.3209 0.7725 2.0814 6 6 3.6239 1.0934 3.4405 7 6 4.5559 0.0277 4.0206 8 7 5.8404 0.0673 3.3173 9 6 6.8413 -0.7980 3.6707 10 1 6.6821 -1.5125 4.4648 11 6 8.0605 -0.7567 3.0082 12 7 8.2546 0.1144 2.0408 13 14 9.4255 -1.9375 3.4897 14 1 8.9611 -3.3351 3.2995 15 1 10.6166 -1.6910 2.6378 16 1 9.7843 -1.7246 4.9148 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0010 19 6 1.3854 -2.4723 0.0005 20 6 2.3796 -3.6352 0.0005 21 1 3.0763 -3.5304 -0.8312 22 6 1.6245 -4.9760 -0.1084 23 6 2.4289 -5.9398 0.7989 24 6 2.8346 -5.0322 1.9868 25 6 3.1499 -3.6702 1.3321 26 9 4.5239 -3.5586 1.0940 27 9 2.7201 -2.6290 2.1618 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6084 2.0284 -0.5139 32 1 3.1499 1.1383 -0.5138 33 1 1.5061 1.7550 1.9815 34 1 2.9181 2.6960 1.4438 35 1 2.7017 1.1249 4.0207 36 1 4.1136 2.0664 3.4836 37 1 4.1040 -0.9565 3.8968 38 1 4.7159 0.2233 5.0809 39 1 5.9835 0.7092 2.6044 40 1 9.1063 0.1430 1.5776 41 1 0.7584 -2.5298 0.8903 42 1 0.7591 -2.5302 -0.8897 43 1 0.6036 -4.8697 0.2584 44 1 1.6237 -5.3308 -1.1390 45 1 1.8018 -6.7638 1.1390 46 1 3.3095 -6.3159 0.2782 47 1 2.0091 -4.9350 2.6919 48 1 3.7188 -5.4291 2.4855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486497989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:42 Heat of formation + Delta-G solvation = -196.200530 kcal Electronic energy + Delta-G solvation = -32063.805905 eV Core-core repulsion = 27595.873753 eV Total energy + Delta-G solvation = -4467.932152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.65641 -47.77448 -40.84001 -39.01263 -38.22838 -36.69924 -36.07280 -33.50492 -32.90351 -31.03170 -29.28626 -28.71412 -27.51982 -26.64673 -25.53826 -23.62816 -22.80961 -22.14856 -21.24145 -19.92930 -19.26123 -18.54775 -18.05231 -17.82235 -17.54037 -17.10759 -16.97093 -16.81357 -16.30815 -16.12447 -15.58560 -15.28733 -15.14374 -14.92486 -14.73578 -14.58306 -14.30382 -14.23108 -14.09131 -13.76900 -13.68406 -13.30132 -13.24819 -13.10569 -13.02589 -12.76372 -12.73027 -12.60241 -12.51960 -12.35478 -12.20982 -12.12764 -12.11547 -11.89988 -11.67815 -11.57209 -11.33952 -10.96931 -10.62476 -10.38615 -9.49035 -8.97992 -7.93242 -5.21320 1.37837 1.45641 1.50522 1.91534 2.18903 2.54619 2.88779 2.95198 3.10118 3.36807 3.39869 3.42868 3.80018 3.93962 4.00131 4.09257 4.15386 4.23066 4.27695 4.32723 4.33614 4.39157 4.42606 4.44793 4.52456 4.56629 4.60189 4.60286 4.66188 4.72971 4.83038 4.85678 4.93816 4.98856 5.00661 5.05904 5.10769 5.12348 5.18154 5.35472 5.42319 5.71286 6.26996 6.48601 6.59171 7.32665 7.50923 8.10108 8.34619 9.31038 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.009620 B = 0.005401 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.761657 B = 5182.712613 C = 7179.588602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.620 5.620 3 C 0.120 3.880 4 C 0.036 3.964 5 O -0.386 6.386 6 C 0.068 3.932 7 C 0.155 3.845 8 N -0.734 5.734 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.080 4.080 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.268 1.268 17 C 0.493 3.507 18 O -0.562 6.562 19 C -0.120 4.120 20 C -0.118 4.118 21 H 0.074 0.926 22 C -0.102 4.102 23 C -0.116 4.116 24 C -0.163 4.163 25 C 0.265 3.735 26 F -0.228 7.228 27 F -0.211 7.211 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.005 0.995 38 H 0.041 0.959 39 H 0.372 0.628 40 H 0.249 0.751 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.066 0.934 47 H 0.114 0.886 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.875 -6.501 -5.859 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.355 5.355 3 C -0.003 4.003 4 C -0.041 4.041 5 O -0.305 6.305 6 C -0.008 4.008 7 C 0.029 3.971 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.803 3.197 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.194 1.194 17 C 0.282 3.718 18 O -0.439 6.439 19 C -0.160 4.160 20 C -0.138 4.138 21 H 0.093 0.907 22 C -0.139 4.139 23 C -0.153 4.153 24 C -0.201 4.201 25 C 0.229 3.771 26 F -0.209 7.209 27 F -0.192 7.192 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.149 0.851 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.023 0.977 38 H 0.059 0.941 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.127 0.873 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.085 0.915 47 H 0.132 0.868 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.088 -6.754 -5.831 28.520 hybrid contribution 1.723 0.510 0.269 1.817 sum -25.365 -6.244 -5.562 26.708 Atomic orbital electron populations 1.22070 0.76750 1.04658 1.03324 1.47863 1.08333 1.04972 1.74339 1.21480 0.97503 0.86517 0.94792 1.23127 0.93785 0.92463 0.94754 1.88261 1.67823 1.49349 1.25081 1.22576 0.97627 0.97009 0.83627 1.20776 0.85584 0.96243 0.94533 1.42377 1.10775 1.42324 1.42106 1.19552 0.92661 1.11350 1.13878 0.91347 1.25627 1.00748 1.01721 0.99039 1.69866 1.24702 1.40216 1.27336 0.85190 0.78352 0.78320 0.77814 1.21146 1.21563 1.19351 1.21314 0.87985 0.87021 0.75520 1.90904 1.16436 1.87602 1.48933 1.21759 0.98217 0.88956 1.07018 1.22660 0.97935 0.98798 0.94396 0.90712 1.22458 0.99590 0.89662 1.02209 1.22504 1.00988 0.97840 0.93993 1.23481 1.04214 0.91638 1.00767 1.22535 0.75876 0.86781 0.91911 1.93008 1.35843 1.96804 1.95242 1.92951 1.89206 1.62574 1.74442 0.90501 0.89818 0.89661 0.85070 0.93450 0.91433 0.92462 0.90721 0.93729 0.97740 0.94101 0.79693 0.94213 0.86607 0.84353 0.87304 0.88162 0.86646 0.91518 0.86753 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 10.24 127.77 1.31 2.17 16 2 N -0.62 -15.33 2.86 -846.74 -2.42 -17.75 16 3 C 0.12 3.22 5.86 86.38 0.51 3.73 16 4 C 0.04 1.07 6.28 71.98 0.45 1.52 16 5 O -0.39 -16.49 9.07 -141.51 -1.28 -17.77 16 6 C 0.07 2.73 6.07 71.98 0.44 3.17 16 7 C 0.16 7.72 6.65 86.38 0.57 8.30 16 8 N -0.73 -45.29 5.55 -343.46 -1.91 -47.20 16 9 C -0.24 -15.92 9.99 84.03 0.84 -15.08 16 10 H 0.07 4.32 7.83 -2.91 -0.02 4.30 16 11 C -0.08 -5.26 5.50 84.86 0.47 -4.79 16 12 N -0.97 -67.80 13.06 21.65 0.28 -67.52 16 13 Si 0.98 52.34 29.55 68.60 2.03 54.37 16 14 H -0.28 -15.05 7.11 99.48 0.71 -14.35 16 15 H -0.29 -15.30 7.11 99.48 0.71 -14.60 16 16 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 17 C 0.49 16.05 6.17 87.65 0.54 16.59 16 18 O -0.56 -26.85 13.29 4.43 0.06 -26.79 16 19 C -0.12 -2.55 3.19 29.85 0.10 -2.46 16 20 C -0.12 -3.05 2.40 -10.07 -0.02 -3.07 16 21 H 0.07 2.36 7.82 -2.39 -0.02 2.35 16 22 C -0.10 -1.41 6.36 31.67 0.20 -1.21 16 23 C -0.12 -1.87 6.91 31.89 0.22 -1.65 16 24 C -0.16 -4.05 6.41 31.71 0.20 -3.85 16 25 C 0.26 9.45 1.79 31.36 0.06 9.51 16 26 F -0.23 -11.42 16.74 44.97 0.75 -10.67 16 27 F -0.21 -8.69 14.05 44.97 0.63 -8.06 16 28 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.08 0.76 6.44 -2.39 -0.02 0.74 16 30 H 0.08 0.73 8.07 -2.39 -0.02 0.71 16 31 H 0.13 2.17 8.07 -2.39 -0.02 2.15 16 32 H 0.05 1.72 7.42 -2.38 -0.02 1.70 16 33 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.37 24.70 7.67 -92.71 -0.71 23.99 16 40 H 0.25 16.72 8.31 -92.71 -0.77 15.95 16 41 H 0.12 2.03 6.92 -2.39 -0.02 2.01 16 42 H 0.14 1.68 8.11 -2.39 -0.02 1.66 16 43 H 0.11 0.84 7.85 -2.39 -0.02 0.82 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.11 2.28 8.12 -2.39 -0.02 2.26 16 48 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 Total: -1.00 -100.65 391.47 4.26 -96.39 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.24 Total: 32.14 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.88 Total: 12.87 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -4.04 Total: -132.47 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.22 Total: -44.57 kcal Atomic # 9 Polarization: -20.11 SS G_CDS: 1.38 Total: -18.73 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.03 Total: 54.37 kcal Total: -100.65 4.26 -96.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486497989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.813 kcal (2) G-P(sol) polarization free energy of solvation -100.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds