Wall clock time and date at job start Tue Mar 31 2020 18:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47092 * 2 1 4 4 C 1.36937 * 119.99936 * 95.10883 * 3 2 1 5 5 H 1.08005 * 120.00004 * 221.27501 * 4 3 2 6 6 C 1.38811 * 119.99788 * 41.27484 * 4 3 2 7 7 N 1.31622 * 119.99757 * 202.47419 * 6 4 3 8 8 Si 1.86798 * 120.00123 * 22.47620 * 6 4 3 9 9 H 1.48504 * 109.47013 * 264.34681 * 8 6 4 10 10 H 1.48496 * 109.47043 * 24.34457 * 8 6 4 11 11 H 1.48498 * 109.47321 * 144.35195 * 8 6 4 12 12 C 1.46498 * 120.00398 * 275.11230 * 3 2 1 13 13 C 1.53002 * 109.47286 * 269.99980 * 12 3 2 14 14 N 1.46495 * 109.47293 * 179.97438 * 13 12 3 15 15 C 1.34779 * 120.00069 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99964 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00252 * 180.02562 * 15 14 13 18 18 H 1.09005 * 112.84644 * 309.66763 * 17 15 14 19 19 C 1.53775 * 113.61528 * 80.86384 * 17 15 14 20 20 C 1.53949 * 87.02039 * 139.95197 * 19 17 15 21 21 C 1.53776 * 87.11251 * 334.63643 * 20 19 17 22 22 H 1.08994 * 113.69657 * 270.80320 * 21 20 19 23 23 C 1.50704 * 113.61413 * 139.90510 * 21 20 19 24 24 C 1.38245 * 119.97599 * 322.23122 * 23 21 20 25 25 C 1.38199 * 120.02341 * 179.76366 * 24 23 21 26 26 C 1.38461 * 119.97368 * 0.51133 * 25 24 23 27 27 F 1.35101 * 120.02135 * 179.76673 * 26 25 24 28 28 C 1.38451 * 119.94711 * 359.74077 * 26 25 24 29 29 C 1.38199 * 119.97867 * 0.02562 * 28 26 25 30 30 H 1.09003 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47548 * 299.99969 * 1 2 3 32 32 H 1.09009 * 109.47328 * 59.99690 * 1 2 3 33 33 H 1.09002 * 109.47018 * 240.00566 * 2 1 3 34 34 H 1.08994 * 109.47303 * 119.99815 * 2 1 3 35 35 H 0.96996 * 119.99813 * 179.97438 * 7 6 4 36 36 H 1.09006 * 109.46792 * 29.99620 * 12 3 2 37 37 H 1.08998 * 109.47476 * 149.99727 * 12 3 2 38 38 H 1.08999 * 109.46990 * 299.99971 * 13 12 3 39 39 H 1.09007 * 109.46859 * 59.99626 * 13 12 3 40 40 H 0.96999 * 119.99974 * 359.97438 * 14 13 12 41 41 H 1.09001 * 113.61628 * 254.53681 * 19 17 15 42 42 H 1.09003 * 113.61127 * 25.43381 * 19 17 15 43 43 H 1.09004 * 113.66480 * 220.06517 * 20 19 17 44 44 H 1.09004 * 113.61194 * 89.20070 * 20 19 17 45 45 H 1.08001 * 119.98283 * 0.02562 * 24 23 21 46 46 H 1.08002 * 120.00734 * 180.25608 * 25 24 23 47 47 H 1.08007 * 120.01151 * 180.02562 * 28 26 25 48 48 H 1.07998 * 119.98733 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3461 1.9915 1.1812 5 1 2.0693 3.0215 1.3519 6 6 3.0340 1.2865 2.1592 7 7 2.9715 1.6729 3.4158 8 14 4.0486 -0.2107 1.6918 9 1 3.2401 -1.4397 1.8953 10 1 4.4485 -0.1120 0.2651 11 1 5.2635 -0.2710 2.5435 12 6 2.1559 2.1096 -1.2636 13 6 3.5584 1.8843 -1.8321 14 7 3.6958 2.6121 -3.0960 15 6 4.8553 2.5600 -3.7811 16 8 5.7849 1.9101 -3.3514 17 6 4.9969 3.3092 -5.0809 18 1 4.1790 3.1123 -5.7741 19 6 5.3042 4.8050 -4.8995 20 6 6.2752 4.6671 -6.0862 21 6 6.3901 3.1783 -5.7188 22 1 7.1810 2.9643 -5.0000 23 6 6.4227 2.2621 -6.9149 24 6 5.6380 2.5393 -8.0188 25 6 5.6708 1.7024 -9.1182 26 6 6.4820 0.5803 -9.1094 27 9 6.5113 -0.2410 -10.1817 28 6 7.2634 0.3010 -8.0012 29 6 7.2327 1.1419 -6.9049 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.4519 1.1800 4.0993 36 1 1.4132 1.7473 -1.9745 37 1 2.0018 3.1742 -1.0880 38 1 4.3011 2.2465 -1.1212 39 1 3.7125 0.8195 -2.0077 40 1 2.9523 3.1316 -3.4398 41 1 4.4524 5.4537 -5.1041 42 1 5.7980 5.0379 -3.9561 43 1 7.2048 5.2216 -5.9575 44 1 5.8081 4.8430 -7.0553 45 1 5.0024 3.4124 -8.0237 46 1 5.0608 1.9214 -9.9821 47 1 7.8969 -0.5737 -7.9934 48 1 7.8419 0.9240 -6.0401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492994451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:44 Heat of formation + Delta-G solvation = -23.397906 kcal Electronic energy + Delta-G solvation = -28228.660776 eV Core-core repulsion = 24198.991133 eV Total energy + Delta-G solvation = -4029.669643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.13811 -40.83022 -39.07030 -37.45088 -36.47537 -34.32337 -31.81530 -31.44859 -31.10377 -30.32753 -28.22182 -26.45014 -25.60168 -23.75853 -23.43497 -22.75679 -22.06123 -20.68476 -20.25182 -19.30243 -18.05409 -17.43453 -16.73604 -16.43148 -16.29178 -15.84677 -15.72685 -15.30924 -14.93450 -14.76734 -14.46656 -14.01567 -13.81634 -13.61716 -13.55709 -13.35970 -13.12774 -13.05387 -12.91689 -12.72255 -12.28428 -12.07543 -11.90502 -11.69489 -11.57048 -11.33735 -11.24981 -11.18891 -10.89228 -10.84349 -10.57559 -10.48622 -10.26620 -9.78865 -9.64420 -9.51462 -9.39320 -8.77318 -8.70324 -8.54880 -6.87177 -6.05261 -3.51401 0.83305 0.94768 2.80298 3.22538 3.31288 3.42867 3.48257 3.55918 3.98445 4.22591 4.33047 4.38503 4.48446 4.50586 4.58391 4.60100 4.80943 4.96018 4.99306 5.08463 5.13626 5.29656 5.30218 5.45475 5.51918 5.62471 5.64861 5.73225 5.74780 5.75331 5.81315 5.83828 5.91692 5.95168 6.10572 6.14366 6.22712 6.30481 6.35591 6.47006 6.60233 6.60766 6.64943 6.79130 6.87299 7.03301 7.76041 8.02675 8.34591 8.46616 8.93165 9.64987 10.06283 11.09647 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.002451 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.317157 B =11423.227062 C =11851.764656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 N -0.599 5.599 4 C -0.275 4.275 5 H 0.078 0.922 6 C 0.043 3.957 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.286 1.286 10 H -0.264 1.264 11 H -0.299 1.299 12 C 0.142 3.858 13 C 0.093 3.907 14 N -0.723 5.723 15 C 0.515 3.485 16 O -0.542 6.542 17 C -0.128 4.128 18 H 0.112 0.888 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.051 4.051 22 H 0.114 0.886 23 C -0.077 4.077 24 C -0.090 4.090 25 C -0.153 4.153 26 C 0.090 3.910 27 F -0.143 7.143 28 C -0.152 4.152 29 C -0.078 4.078 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.264 0.736 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.396 0.604 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 4.308 -25.201 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.006 3.994 3 N -0.321 5.321 4 C -0.403 4.403 5 H 0.095 0.905 6 C -0.159 4.159 7 N -0.535 5.535 8 Si 0.701 3.299 9 H -0.213 1.213 10 H -0.188 1.188 11 H -0.227 1.227 12 C 0.015 3.985 13 C -0.033 4.033 14 N -0.373 5.373 15 C 0.301 3.699 16 O -0.419 6.419 17 C -0.149 4.149 18 H 0.130 0.870 19 C -0.161 4.161 20 C -0.171 4.171 21 C -0.069 4.069 22 H 0.132 0.868 23 C -0.077 4.077 24 C -0.108 4.108 25 C -0.172 4.172 26 C 0.071 3.929 27 F -0.122 7.122 28 C -0.171 4.171 29 C -0.096 4.096 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.229 0.771 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.824 3.771 -24.696 25.444 hybrid contribution 0.262 -0.993 -0.424 1.111 sum 5.087 2.778 -25.120 25.780 Atomic orbital electron populations 1.22226 0.98862 0.99467 1.01593 1.21144 0.92636 0.86431 0.99208 1.44068 1.74523 1.11517 1.02025 1.18724 1.32026 0.99083 0.90482 0.90481 1.25571 0.97043 0.98010 0.95288 1.69872 1.42417 1.41531 0.99720 0.86976 0.80531 0.83117 0.79273 1.21339 1.18807 1.22679 1.21075 0.91812 0.97339 0.88290 1.22418 1.01854 0.95800 0.83215 1.46137 1.14868 1.51736 1.24595 1.20392 0.82690 0.81202 0.85652 1.90693 1.39273 1.42242 1.69707 1.22923 0.99163 0.97083 0.95744 0.86975 1.22847 1.00072 0.93566 0.99657 1.23054 1.00343 0.95117 0.98553 1.21478 0.97436 0.93532 0.94495 0.86808 1.19821 0.96633 0.95980 0.95274 1.20881 0.98574 0.99192 0.92139 1.21105 1.00809 0.94874 1.00438 1.17744 0.99725 0.90665 0.84800 1.91493 1.95504 1.71261 1.53914 1.21182 1.01014 1.01745 0.93142 1.21044 0.97950 0.93122 0.97498 0.94220 0.92192 0.93915 0.94805 0.92423 0.92599 0.93842 0.92453 0.91091 0.92628 0.77094 0.90229 0.89246 0.90542 0.89488 0.84910 0.84830 0.84777 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.23 37.16 0.38 -2.58 16 2 C 0.13 2.79 5.06 -4.04 -0.02 2.77 16 3 N -0.60 -13.66 2.00 -173.24 -0.35 -14.00 16 4 C -0.27 -7.45 9.87 -15.06 -0.15 -7.60 16 5 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 6 C 0.04 1.21 5.23 -17.43 -0.09 1.12 16 7 N -0.90 -27.01 13.97 55.49 0.78 -26.23 16 8 Si 0.87 22.33 25.26 -169.99 -4.29 18.04 16 9 H -0.29 -7.11 6.73 56.52 0.38 -6.73 16 10 H -0.26 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 12 C 0.14 2.60 5.80 -4.04 -0.02 2.58 16 13 C 0.09 1.71 6.00 -4.04 -0.02 1.69 16 14 N -0.72 -10.16 5.56 -60.29 -0.33 -10.50 16 15 C 0.52 7.50 7.35 -10.98 -0.08 7.42 16 16 O -0.54 -10.35 15.91 5.56 0.09 -10.26 16 17 C -0.13 -1.24 3.61 -90.96 -0.33 -1.57 16 18 H 0.11 0.88 7.71 -51.93 -0.40 0.48 16 19 C -0.12 -0.96 7.64 -25.83 -0.20 -1.16 16 20 C -0.13 -0.92 7.46 -25.83 -0.19 -1.12 16 21 C -0.05 -0.48 3.30 -90.96 -0.30 -0.78 16 22 H 0.11 1.29 7.40 -51.93 -0.38 0.91 16 23 C -0.08 -0.73 5.29 -104.62 -0.55 -1.28 16 24 C -0.09 -0.72 8.59 -39.59 -0.34 -1.06 16 25 C -0.15 -1.31 10.03 -39.51 -0.40 -1.70 16 26 C 0.09 0.90 7.30 -39.42 -0.29 0.61 16 27 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 28 C -0.15 -1.48 10.03 -39.52 -0.40 -1.88 16 29 C -0.08 -0.79 9.71 -39.59 -0.38 -1.17 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 34 H 0.06 1.36 4.07 -51.93 -0.21 1.15 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 37 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.40 4.16 8.47 -40.82 -0.35 3.81 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.47 6.32 -51.93 -0.33 0.14 16 45 H 0.13 0.75 6.67 -52.49 -0.35 0.40 16 46 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 48 H 0.14 1.31 8.05 -52.49 -0.42 0.89 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -32.97 393.90 -9.03 -41.99 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.51 Total: 2.24 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.38 Total: -5.71 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.09 Total: -50.74 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.29 Total: 18.04 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.97 -9.03 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492994451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.597 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds