Wall clock time and date at job start Tue Mar 31 2020 18:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47092 * 2 1 4 4 C 1.36937 * 119.99936 * 95.10883 * 3 2 1 5 5 H 1.08005 * 120.00004 * 221.27501 * 4 3 2 6 6 C 1.38811 * 119.99788 * 41.27484 * 4 3 2 7 7 N 1.31622 * 119.99757 * 202.47419 * 6 4 3 8 8 Si 1.86798 * 120.00123 * 22.47620 * 6 4 3 9 9 H 1.48504 * 109.47013 * 264.34681 * 8 6 4 10 10 H 1.48496 * 109.47043 * 24.34457 * 8 6 4 11 11 H 1.48498 * 109.47321 * 144.35195 * 8 6 4 12 12 C 1.46498 * 120.00398 * 275.11230 * 3 2 1 13 13 C 1.53002 * 109.47286 * 269.99980 * 12 3 2 14 14 N 1.46495 * 109.47293 * 179.97438 * 13 12 3 15 15 C 1.34779 * 120.00069 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99964 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00252 * 180.02562 * 15 14 13 18 18 H 1.09005 * 112.84644 * 309.66763 * 17 15 14 19 19 C 1.53775 * 113.61528 * 80.86384 * 17 15 14 20 20 C 1.53949 * 87.02039 * 139.95197 * 19 17 15 21 21 C 1.53776 * 87.11251 * 334.63643 * 20 19 17 22 22 H 1.08994 * 113.69657 * 270.80320 * 21 20 19 23 23 C 1.50704 * 113.61413 * 139.90510 * 21 20 19 24 24 C 1.38245 * 119.97599 * 322.23122 * 23 21 20 25 25 C 1.38199 * 120.02341 * 179.76366 * 24 23 21 26 26 C 1.38461 * 119.97368 * 0.51133 * 25 24 23 27 27 F 1.35101 * 120.02135 * 179.76673 * 26 25 24 28 28 C 1.38451 * 119.94711 * 359.74077 * 26 25 24 29 29 C 1.38199 * 119.97867 * 0.02562 * 28 26 25 30 30 H 1.09003 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47548 * 299.99969 * 1 2 3 32 32 H 1.09009 * 109.47328 * 59.99690 * 1 2 3 33 33 H 1.09002 * 109.47018 * 240.00566 * 2 1 3 34 34 H 1.08994 * 109.47303 * 119.99815 * 2 1 3 35 35 H 0.96996 * 119.99813 * 179.97438 * 7 6 4 36 36 H 1.09006 * 109.46792 * 29.99620 * 12 3 2 37 37 H 1.08998 * 109.47476 * 149.99727 * 12 3 2 38 38 H 1.08999 * 109.46990 * 299.99971 * 13 12 3 39 39 H 1.09007 * 109.46859 * 59.99626 * 13 12 3 40 40 H 0.96999 * 119.99974 * 359.97438 * 14 13 12 41 41 H 1.09001 * 113.61628 * 254.53681 * 19 17 15 42 42 H 1.09003 * 113.61127 * 25.43381 * 19 17 15 43 43 H 1.09004 * 113.66480 * 220.06517 * 20 19 17 44 44 H 1.09004 * 113.61194 * 89.20070 * 20 19 17 45 45 H 1.08001 * 119.98283 * 0.02562 * 24 23 21 46 46 H 1.08002 * 120.00734 * 180.25608 * 25 24 23 47 47 H 1.08007 * 120.01151 * 180.02562 * 28 26 25 48 48 H 1.07998 * 119.98733 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3461 1.9915 1.1812 5 1 2.0693 3.0215 1.3519 6 6 3.0340 1.2865 2.1592 7 7 2.9715 1.6729 3.4158 8 14 4.0486 -0.2107 1.6918 9 1 3.2401 -1.4397 1.8953 10 1 4.4485 -0.1120 0.2651 11 1 5.2635 -0.2710 2.5435 12 6 2.1559 2.1096 -1.2636 13 6 3.5584 1.8843 -1.8321 14 7 3.6958 2.6121 -3.0960 15 6 4.8553 2.5600 -3.7811 16 8 5.7849 1.9101 -3.3514 17 6 4.9969 3.3092 -5.0809 18 1 4.1790 3.1123 -5.7741 19 6 5.3042 4.8050 -4.8995 20 6 6.2752 4.6671 -6.0862 21 6 6.3901 3.1783 -5.7188 22 1 7.1810 2.9643 -5.0000 23 6 6.4227 2.2621 -6.9149 24 6 5.6380 2.5393 -8.0188 25 6 5.6708 1.7024 -9.1182 26 6 6.4820 0.5803 -9.1094 27 9 6.5113 -0.2410 -10.1817 28 6 7.2634 0.3010 -8.0012 29 6 7.2327 1.1419 -6.9049 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.4519 1.1800 4.0993 36 1 1.4132 1.7473 -1.9745 37 1 2.0018 3.1742 -1.0880 38 1 4.3011 2.2465 -1.1212 39 1 3.7125 0.8195 -2.0077 40 1 2.9523 3.1316 -3.4398 41 1 4.4524 5.4537 -5.1041 42 1 5.7980 5.0379 -3.9561 43 1 7.2048 5.2216 -5.9575 44 1 5.8081 4.8430 -7.0553 45 1 5.0024 3.4124 -8.0237 46 1 5.0608 1.9214 -9.9821 47 1 7.8969 -0.5737 -7.9934 48 1 7.8419 0.9240 -6.0401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492994451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:43 Heat of formation + Delta-G solvation = -43.045886 kcal Electronic energy + Delta-G solvation = -28229.512777 eV Core-core repulsion = 24198.991133 eV Total energy + Delta-G solvation = -4030.521643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.90268 -41.68408 -40.03725 -38.51110 -37.96439 -35.76831 -33.89520 -32.11714 -32.01433 -31.61926 -29.76847 -27.55308 -26.29524 -25.51247 -24.29965 -24.09508 -22.76497 -22.00273 -21.71926 -20.13035 -18.84867 -18.72041 -18.35668 -17.29611 -17.25283 -17.05422 -16.93659 -16.60039 -16.23259 -15.88663 -15.47957 -15.36357 -15.23341 -14.79594 -14.48758 -14.45098 -14.32387 -14.06320 -13.95754 -13.81408 -13.70170 -13.50718 -13.05440 -12.96980 -12.82580 -12.67584 -12.60864 -12.38313 -12.29185 -11.91465 -11.88570 -11.72668 -11.52038 -11.47492 -11.20953 -10.75008 -10.66272 -10.06730 -10.05688 -9.49219 -8.78633 -8.25686 -5.66331 0.12446 0.27501 1.24161 1.37518 1.47567 1.66560 2.21386 2.37033 2.57133 3.01910 3.28789 3.41456 3.51100 3.63977 3.71724 3.82887 3.91448 3.97129 4.07090 4.18247 4.23630 4.31570 4.33077 4.34864 4.40966 4.63648 4.67796 4.71645 4.74894 4.81861 4.92295 4.96526 4.97015 5.07017 5.08670 5.11115 5.12567 5.16283 5.17813 5.22250 5.27760 5.46239 5.51021 5.51357 5.67217 5.93157 5.93257 6.17393 6.65031 6.97292 7.34361 7.58595 8.02024 8.93732 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.002451 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.317157 B =11423.227062 C =11851.764656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 N -0.613 5.613 4 C -0.254 4.254 5 H 0.048 0.952 6 C -0.009 4.009 7 N -0.942 5.942 8 Si 0.927 3.073 9 H -0.272 1.272 10 H -0.266 1.266 11 H -0.311 1.311 12 C 0.146 3.854 13 C 0.109 3.891 14 N -0.709 5.709 15 C 0.509 3.491 16 O -0.595 6.595 17 C -0.120 4.120 18 H 0.145 0.855 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.059 4.059 22 H 0.083 0.917 23 C -0.082 4.082 24 C -0.082 4.082 25 C -0.149 4.149 26 C 0.070 3.930 27 F -0.151 7.151 28 C -0.161 4.161 29 C -0.099 4.099 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.035 0.965 40 H 0.418 0.582 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.168 0.832 46 H 0.158 0.842 47 H 0.139 0.861 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 5.257 -28.877 29.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.003 4.003 3 N -0.336 5.336 4 C -0.384 4.384 5 H 0.066 0.934 6 C -0.207 4.207 7 N -0.586 5.586 8 Si 0.757 3.243 9 H -0.199 1.199 10 H -0.191 1.191 11 H -0.239 1.239 12 C 0.020 3.980 13 C -0.018 4.018 14 N -0.362 5.362 15 C 0.297 3.703 16 O -0.476 6.476 17 C -0.141 4.141 18 H 0.163 0.837 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.078 4.078 22 H 0.101 0.899 23 C -0.083 4.083 24 C -0.099 4.099 25 C -0.168 4.168 26 C 0.051 3.949 27 F -0.130 7.130 28 C -0.180 4.180 29 C -0.117 4.117 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.255 0.745 41 H 0.129 0.871 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.134 0.866 45 H 0.186 0.814 46 H 0.176 0.824 47 H 0.156 0.844 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.843 4.730 -28.432 28.963 hybrid contribution 0.852 -1.243 0.656 1.644 sum 3.694 3.487 -27.776 28.237 Atomic orbital electron populations 1.22088 0.96241 1.01231 1.01476 1.21265 0.94761 0.85275 0.98960 1.44211 1.74849 1.12273 1.02242 1.18641 1.29968 0.97851 0.91927 0.93425 1.26073 0.98551 1.00781 0.95271 1.69971 1.44381 1.43528 1.00671 0.86077 0.78811 0.81220 0.78241 1.19901 1.19086 1.23935 1.21165 0.92432 0.97347 0.87048 1.21892 1.00640 0.94865 0.84380 1.45904 1.15896 1.51395 1.22970 1.21380 0.81609 0.80439 0.86916 1.90678 1.41035 1.44572 1.71300 1.23080 1.00246 0.97594 0.93159 0.83747 1.22852 1.01223 0.92262 0.99225 1.23061 1.00539 0.92444 0.99416 1.21458 0.96514 0.95710 0.94087 0.89864 1.19934 0.96857 0.95574 0.95896 1.21189 0.98031 0.99861 0.90843 1.21425 1.00093 0.93877 1.01365 1.18001 1.00685 0.91529 0.84664 1.91469 1.95645 1.71672 1.54207 1.21275 1.01415 1.02045 0.93274 1.21104 0.98932 0.94179 0.97495 0.91570 0.94644 0.91613 0.92593 0.95098 0.92808 0.89903 0.91877 0.95394 0.94608 0.74504 0.87147 0.91350 0.90244 0.86595 0.81433 0.82439 0.84357 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 10.23 71.98 0.74 -4.37 16 2 C 0.12 4.96 5.06 86.38 0.44 5.39 16 3 N -0.61 -27.39 2.00 -702.00 -1.40 -28.79 16 4 C -0.25 -14.00 9.87 84.03 0.83 -13.17 16 5 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 6 C -0.01 -0.54 5.23 84.86 0.44 -0.10 16 7 N -0.94 -58.74 13.97 21.65 0.30 -58.44 16 8 Si 0.93 47.54 25.26 68.60 1.73 49.27 16 9 H -0.27 -13.20 6.73 99.48 0.67 -12.53 16 10 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 12 C 0.15 5.06 5.80 86.38 0.50 5.56 16 13 C 0.11 3.98 6.00 86.38 0.52 4.50 16 14 N -0.71 -18.67 5.56 -463.06 -2.57 -21.24 16 15 C 0.51 14.33 7.35 87.66 0.64 14.97 16 16 O -0.60 -23.41 15.91 -3.04 -0.05 -23.46 16 17 C -0.12 -1.98 3.61 -11.02 -0.04 -2.02 16 18 H 0.14 1.50 7.71 -2.38 -0.02 1.48 16 19 C -0.12 -1.44 7.64 31.18 0.24 -1.20 16 20 C -0.12 -1.20 7.46 31.18 0.23 -0.97 16 21 C -0.06 -1.02 3.30 -11.01 -0.04 -1.06 16 22 H 0.08 1.98 7.40 -2.39 -0.02 1.96 16 23 C -0.08 -1.41 5.29 -19.86 -0.11 -1.52 16 24 C -0.08 -0.99 8.59 22.26 0.19 -0.80 16 25 C -0.15 -2.07 10.03 22.31 0.22 -1.85 16 26 C 0.07 1.32 7.30 22.37 0.16 1.48 16 27 F -0.15 -3.12 17.27 44.97 0.78 -2.34 16 28 C -0.16 -3.15 10.03 22.31 0.22 -2.92 16 29 C -0.10 -2.02 9.71 22.26 0.22 -1.80 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 33 H 0.06 2.03 8.11 -2.39 -0.02 2.01 16 34 H 0.03 1.42 4.07 -2.39 -0.01 1.41 16 35 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.08 2.27 8.07 -2.38 -0.02 2.25 16 37 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 1.44 8.14 -2.38 -0.02 1.43 16 40 H 0.42 7.29 8.47 -92.71 -0.79 6.51 16 41 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 43 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 44 H 0.12 0.56 6.32 -2.39 -0.02 0.55 16 45 H 0.17 0.83 6.67 -2.91 -0.02 0.81 16 46 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 48 H 0.12 2.67 8.05 -2.91 -0.02 2.64 16 Total: -1.00 -76.71 393.90 4.34 -72.36 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.14 Total: 12.51 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.42 Total: 0.14 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -3.67 Total: -108.48 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.73 Total: 49.27 kcal Total: -76.71 4.34 -72.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492994451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.316 kcal (2) G-P(sol) polarization free energy of solvation -76.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds