Wall clock time and date at job start Tue Mar 31 2020 18:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.46947 * 2 1 4 4 C 1.34778 * 120.00224 * 90.00137 * 3 2 1 5 5 O 1.21280 * 119.99840 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.99861 * 359.97438 * 4 3 2 7 7 C 1.53005 * 109.46913 * 180.02562 * 6 4 3 8 8 C 1.50710 * 109.46894 * 179.97438 * 7 6 4 9 9 C 1.38214 * 120.00750 * 100.00113 * 8 7 6 10 10 C 1.38224 * 120.02197 * 179.97438 * 9 8 7 11 11 C 1.38265 * 120.05408 * 359.97438 * 10 9 8 12 12 C 1.38183 * 120.02323 * 359.97438 * 11 10 9 13 13 C 1.38437 * 120.01179 * 280.23248 * 8 7 6 14 14 F 1.35099 * 120.02745 * 0.04422 * 13 8 7 15 15 C 1.46501 * 119.99898 * 269.99486 * 3 2 1 16 16 H 1.08995 * 110.88773 * 356.12136 * 15 3 2 17 17 C 1.55160 * 111.00391 * 120.00136 * 15 3 2 18 18 C 1.54318 * 102.94135 * 153.57747 * 17 15 3 19 19 N 1.47029 * 107.27447 * 337.80522 * 18 17 15 20 20 C 1.36935 * 125.64982 * 178.98208 * 19 18 17 21 21 H 1.07997 * 119.99822 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99888 * 359.97438 * 20 19 18 23 23 N 1.31616 * 120.00128 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99775 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47017 * 60.00107 * 24 22 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46936 * 299.99882 * 24 22 20 28 28 C 1.47423 * 108.70162 * 358.94543 * 19 18 17 29 29 H 1.09004 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47422 * 300.00238 * 1 2 3 31 31 H 1.08998 * 109.47328 * 60.00581 * 1 2 3 32 32 H 1.09001 * 109.47422 * 239.99762 * 2 1 3 33 33 H 1.08999 * 109.46806 * 119.99351 * 2 1 3 34 34 H 1.08993 * 109.47375 * 60.00210 * 6 4 3 35 35 H 1.09002 * 109.47053 * 300.00418 * 6 4 3 36 36 H 1.08998 * 109.47117 * 60.00262 * 7 6 4 37 37 H 1.08990 * 109.47074 * 299.99703 * 7 6 4 38 38 H 1.08000 * 119.99525 * 359.97438 * 9 8 7 39 39 H 1.08004 * 119.97833 * 180.02562 * 10 9 8 40 40 H 1.07999 * 119.98941 * 180.02562 * 11 10 9 41 41 H 1.08002 * 120.01017 * 180.02562 * 12 11 10 42 42 H 1.08996 * 110.72150 * 271.94434 * 17 15 3 43 43 H 1.08997 * 110.71975 * 35.21342 * 17 15 3 44 44 H 1.08998 * 109.88885 * 97.22637 * 18 17 15 45 45 H 1.09002 * 109.88176 * 218.39007 * 18 17 15 46 46 H 0.97004 * 119.99767 * 180.02562 * 23 22 20 47 47 H 1.09004 * 110.36550 * 265.29166 * 28 19 18 48 48 H 1.08992 * 110.37041 * 142.96523 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2429 2.0166 1.1672 5 8 2.6467 3.1602 1.1671 6 6 1.9912 1.3064 2.4723 7 6 2.3222 2.2441 3.6352 8 6 2.0699 1.5340 4.9404 9 6 3.1253 0.9848 5.6438 10 6 2.8944 0.3340 6.8411 11 6 1.6077 0.2320 7.3369 12 6 0.5511 0.7812 6.6358 13 6 0.7804 1.4275 5.4327 14 9 -0.2526 1.9591 4.7432 15 6 2.2625 2.0718 -1.2687 16 1 2.0990 1.4024 -2.1133 17 6 1.3815 3.3434 -1.3884 18 6 2.2022 4.2446 -2.3348 19 7 3.5996 3.7927 -2.2653 20 6 4.6456 4.3215 -2.9734 21 1 5.6396 3.9174 -2.8510 22 6 4.4282 5.3770 -3.8484 23 7 3.2169 5.8697 -3.9971 24 14 5.8553 6.0988 -4.8138 25 1 6.4597 5.0442 -5.6668 26 1 5.3630 7.2074 -5.6705 27 1 6.8778 6.6192 -3.8709 28 6 3.6882 2.6764 -1.3064 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5137 0.8900 34 1 2.6211 0.4188 2.5302 35 1 0.9431 1.0126 2.5298 36 1 1.6920 3.1315 3.5771 37 1 3.3701 2.5382 3.5778 38 1 4.1309 1.0642 5.2578 39 1 3.7197 -0.0945 7.3904 40 1 1.4285 -0.2764 8.2727 41 1 -0.4538 0.7018 7.0235 42 1 0.4139 3.1023 -1.8282 43 1 1.2563 3.8187 -0.4155 44 1 1.8311 4.1462 -3.3549 45 1 2.1320 5.2831 -2.0112 46 1 3.0650 6.6070 -4.6089 47 1 3.9700 3.0451 -0.3201 48 1 4.4062 1.9337 -1.6541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494921875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:18 Heat of formation + Delta-G solvation = -28.014027 kcal Electronic energy + Delta-G solvation = -29151.205862 eV Core-core repulsion = 25121.336049 eV Total energy + Delta-G solvation = -4029.869813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.09149 -40.16229 -39.28874 -36.85565 -35.46812 -34.23326 -32.30111 -30.90569 -30.26682 -29.98136 -28.86023 -27.04202 -25.12022 -24.13772 -23.20825 -23.03856 -21.62464 -20.62113 -19.95149 -18.50731 -17.81825 -16.94777 -16.81716 -16.71144 -16.01969 -15.81883 -15.56588 -15.28246 -14.56659 -14.48344 -14.16723 -13.90958 -13.80021 -13.60221 -13.38433 -13.24346 -13.01040 -12.83347 -12.63894 -12.19281 -12.11517 -12.01733 -11.88355 -11.69724 -11.62512 -11.34583 -11.19944 -10.98402 -10.83187 -10.76122 -10.56107 -10.20139 -10.04037 -9.82281 -9.56355 -9.30615 -9.05892 -8.85917 -8.50988 -8.25461 -6.65397 -5.58921 -2.91138 0.84334 0.88652 2.91212 3.14471 3.31548 3.47695 3.51507 3.53175 3.99719 4.30618 4.44233 4.59341 4.61730 4.78033 4.84042 4.90793 4.95009 5.01779 5.09831 5.16530 5.32102 5.40763 5.53705 5.54857 5.58373 5.63439 5.66858 5.70749 5.73666 5.75924 5.88161 5.90678 5.98331 6.04943 6.05771 6.13328 6.16224 6.31913 6.58387 6.59269 6.67607 6.77179 6.82243 7.32314 7.65701 7.72367 7.79881 7.95099 8.38331 8.52102 9.34471 9.95147 10.62691 11.52830 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002571 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.950649 B =10889.884562 C =11500.723548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.605 5.605 4 C 0.509 3.491 5 O -0.515 6.515 6 C -0.133 4.133 7 C -0.067 4.067 8 C -0.111 4.111 9 C -0.088 4.088 10 C -0.129 4.129 11 C -0.099 4.099 12 C -0.154 4.154 13 C 0.100 3.900 14 F -0.136 7.136 15 C 0.131 3.869 16 H 0.089 0.911 17 C -0.152 4.152 18 C 0.185 3.815 19 N -0.602 5.602 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.923 5.923 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.124 3.876 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.041 0.959 46 H 0.251 0.749 47 H 0.050 0.950 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.559 -17.279 21.034 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.338 5.338 4 C 0.296 3.704 5 O -0.390 6.390 6 C -0.174 4.174 7 C -0.105 4.105 8 C -0.112 4.112 9 C -0.106 4.106 10 C -0.147 4.147 11 C -0.117 4.117 12 C -0.173 4.173 13 C 0.081 3.919 14 F -0.114 7.114 15 C 0.028 3.972 16 H 0.107 0.893 17 C -0.191 4.191 18 C 0.060 3.940 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.003 4.003 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.346 -16.460 20.827 27.294 hybrid contribution 0.347 0.346 -0.674 0.833 sum -5.999 -16.114 20.153 26.492 Atomic orbital electron populations 1.22231 0.96053 1.01902 1.02842 1.21550 0.94404 0.82909 1.02976 1.48002 1.65839 1.13744 1.06248 1.20464 0.77957 0.86976 0.84994 1.90759 1.43915 1.17367 1.86975 1.21698 1.03645 0.99623 0.92386 1.20309 1.04346 0.97497 0.88306 1.20066 0.91780 1.00929 0.98418 1.21050 0.98723 0.96346 0.94489 1.21226 0.97172 0.99952 0.96392 1.21004 0.92180 0.98794 0.99688 1.21161 1.00863 1.00717 0.94564 1.17625 0.84086 0.98246 0.91976 1.91513 1.57063 1.84093 1.78764 1.22399 0.98086 0.93509 0.83239 0.89330 1.23208 0.97703 0.96468 1.01712 1.21040 0.82490 0.95026 0.95409 1.44311 1.05034 1.36073 1.47465 1.18999 0.87727 1.11942 1.16389 0.90659 1.24788 0.96777 0.98891 1.00226 1.69965 1.18900 1.28150 1.40138 0.86200 0.81404 0.78513 0.79655 1.21286 1.21665 1.21258 1.21928 0.92626 0.90504 0.95220 0.91789 0.92511 0.91929 0.90291 0.90687 0.89090 0.89162 0.89652 0.89397 0.84835 0.85362 0.85201 0.84867 0.92858 0.90982 0.93875 0.94045 0.93841 0.93245 0.95276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.15 0.38 -1.22 16 2 C 0.11 1.07 5.93 -4.05 -0.02 1.05 16 3 N -0.60 -8.92 2.56 -163.68 -0.42 -9.34 16 4 C 0.51 7.94 6.96 -10.99 -0.08 7.86 16 5 O -0.51 -10.43 12.02 5.56 0.07 -10.36 16 6 C -0.13 -1.50 4.23 -27.88 -0.12 -1.61 16 7 C -0.07 -0.78 4.36 -27.88 -0.12 -0.90 16 8 C -0.11 -1.10 5.14 -104.55 -0.54 -1.64 16 9 C -0.09 -0.72 9.67 -39.60 -0.38 -1.10 16 10 C -0.13 -0.87 10.04 -39.58 -0.40 -1.27 16 11 C -0.10 -0.65 10.04 -39.59 -0.40 -1.05 16 12 C -0.15 -1.24 10.03 -39.51 -0.40 -1.64 16 13 C 0.10 1.02 7.24 -39.42 -0.29 0.73 16 14 F -0.14 -1.59 16.67 2.25 0.04 -1.55 16 15 C 0.13 2.44 3.55 -65.78 -0.23 2.21 16 16 H 0.09 1.55 7.86 -51.93 -0.41 1.14 16 17 C -0.15 -3.18 6.33 -24.90 -0.16 -3.33 16 18 C 0.19 4.88 5.37 -3.06 -0.02 4.87 16 19 N -0.60 -16.57 3.39 -170.07 -0.58 -17.15 16 20 C -0.22 -6.56 10.28 -15.06 -0.15 -6.71 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -28.45 10.31 55.49 0.57 -27.88 16 24 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.12 2.83 6.58 -2.53 -0.02 2.82 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.55 7.22 -51.93 -0.37 0.18 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 33 H 0.07 0.61 6.44 -51.93 -0.33 0.27 16 34 H 0.09 0.83 7.40 -51.93 -0.38 0.44 16 35 H 0.09 0.93 7.18 -51.93 -0.37 0.56 16 36 H 0.08 1.15 7.91 -51.93 -0.41 0.74 16 37 H 0.09 1.05 7.96 -51.93 -0.41 0.63 16 38 H 0.13 0.90 8.04 -52.49 -0.42 0.48 16 39 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.59 6.25 -51.93 -0.32 1.27 16 44 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 45 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.05 1.22 5.53 -51.93 -0.29 0.93 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -34.89 384.81 -10.00 -44.89 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.42 Total: -1.06 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.03 Total: -1.36 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.42 Total: -54.37 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.89 -10.00 -44.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494921875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.880 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds