Wall clock time and date at job start Tue Mar 31 2020 18:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.46947 * 2 1 4 4 C 1.34778 * 120.00224 * 90.00137 * 3 2 1 5 5 O 1.21280 * 119.99840 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.99861 * 359.97438 * 4 3 2 7 7 C 1.53005 * 109.46913 * 180.02562 * 6 4 3 8 8 C 1.50710 * 109.46894 * 179.97438 * 7 6 4 9 9 C 1.38214 * 120.00750 * 100.00113 * 8 7 6 10 10 C 1.38224 * 120.02197 * 179.97438 * 9 8 7 11 11 C 1.38265 * 120.05408 * 359.97438 * 10 9 8 12 12 C 1.38183 * 120.02323 * 359.97438 * 11 10 9 13 13 C 1.38437 * 120.01179 * 280.23248 * 8 7 6 14 14 F 1.35099 * 120.02745 * 0.04422 * 13 8 7 15 15 C 1.46501 * 119.99898 * 269.99486 * 3 2 1 16 16 H 1.08995 * 110.88773 * 356.12136 * 15 3 2 17 17 C 1.55160 * 111.00391 * 120.00136 * 15 3 2 18 18 C 1.54318 * 102.94135 * 153.57747 * 17 15 3 19 19 N 1.47029 * 107.27447 * 337.80522 * 18 17 15 20 20 C 1.36935 * 125.64982 * 178.98208 * 19 18 17 21 21 H 1.07997 * 119.99822 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99888 * 359.97438 * 20 19 18 23 23 N 1.31616 * 120.00128 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99775 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47017 * 60.00107 * 24 22 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46936 * 299.99882 * 24 22 20 28 28 C 1.47423 * 108.70162 * 358.94543 * 19 18 17 29 29 H 1.09004 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47422 * 300.00238 * 1 2 3 31 31 H 1.08998 * 109.47328 * 60.00581 * 1 2 3 32 32 H 1.09001 * 109.47422 * 239.99762 * 2 1 3 33 33 H 1.08999 * 109.46806 * 119.99351 * 2 1 3 34 34 H 1.08993 * 109.47375 * 60.00210 * 6 4 3 35 35 H 1.09002 * 109.47053 * 300.00418 * 6 4 3 36 36 H 1.08998 * 109.47117 * 60.00262 * 7 6 4 37 37 H 1.08990 * 109.47074 * 299.99703 * 7 6 4 38 38 H 1.08000 * 119.99525 * 359.97438 * 9 8 7 39 39 H 1.08004 * 119.97833 * 180.02562 * 10 9 8 40 40 H 1.07999 * 119.98941 * 180.02562 * 11 10 9 41 41 H 1.08002 * 120.01017 * 180.02562 * 12 11 10 42 42 H 1.08996 * 110.72150 * 271.94434 * 17 15 3 43 43 H 1.08997 * 110.71975 * 35.21342 * 17 15 3 44 44 H 1.08998 * 109.88885 * 97.22637 * 18 17 15 45 45 H 1.09002 * 109.88176 * 218.39007 * 18 17 15 46 46 H 0.97004 * 119.99767 * 180.02562 * 23 22 20 47 47 H 1.09004 * 110.36550 * 265.29166 * 28 19 18 48 48 H 1.08992 * 110.37041 * 142.96523 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2429 2.0166 1.1672 5 8 2.6467 3.1602 1.1671 6 6 1.9912 1.3064 2.4723 7 6 2.3222 2.2441 3.6352 8 6 2.0699 1.5340 4.9404 9 6 3.1253 0.9848 5.6438 10 6 2.8944 0.3340 6.8411 11 6 1.6077 0.2320 7.3369 12 6 0.5511 0.7812 6.6358 13 6 0.7804 1.4275 5.4327 14 9 -0.2526 1.9591 4.7432 15 6 2.2625 2.0718 -1.2687 16 1 2.0990 1.4024 -2.1133 17 6 1.3815 3.3434 -1.3884 18 6 2.2022 4.2446 -2.3348 19 7 3.5996 3.7927 -2.2653 20 6 4.6456 4.3215 -2.9734 21 1 5.6396 3.9174 -2.8510 22 6 4.4282 5.3770 -3.8484 23 7 3.2169 5.8697 -3.9971 24 14 5.8553 6.0988 -4.8138 25 1 6.4597 5.0442 -5.6668 26 1 5.3630 7.2074 -5.6705 27 1 6.8778 6.6192 -3.8709 28 6 3.6882 2.6764 -1.3064 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5137 0.8900 34 1 2.6211 0.4188 2.5302 35 1 0.9431 1.0126 2.5298 36 1 1.6920 3.1315 3.5771 37 1 3.3701 2.5382 3.5778 38 1 4.1309 1.0642 5.2578 39 1 3.7197 -0.0945 7.3904 40 1 1.4285 -0.2764 8.2727 41 1 -0.4538 0.7018 7.0235 42 1 0.4139 3.1023 -1.8282 43 1 1.2563 3.8187 -0.4155 44 1 1.8311 4.1462 -3.3549 45 1 2.1320 5.2831 -2.0112 46 1 3.0650 6.6070 -4.6089 47 1 3.9700 3.0451 -0.3201 48 1 4.4062 1.9337 -1.6541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494921875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:17 Heat of formation + Delta-G solvation = -47.850732 kcal Electronic energy + Delta-G solvation = -29152.066046 eV Core-core repulsion = 25121.336049 eV Total energy + Delta-G solvation = -4030.729997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.87191 -41.44313 -39.96624 -38.57705 -36.77364 -35.18166 -34.22586 -31.69634 -31.48218 -30.91750 -30.55134 -28.68053 -26.68831 -25.62586 -24.08255 -23.66457 -22.69387 -22.03458 -21.80837 -19.75917 -18.93403 -18.49401 -18.00901 -17.47554 -17.22904 -16.71704 -16.60821 -16.43139 -16.38365 -15.83307 -15.39660 -15.02114 -14.77950 -14.62481 -14.44579 -14.35454 -14.16708 -14.08565 -13.85380 -13.65458 -13.57772 -13.24440 -12.94723 -12.86062 -12.73129 -12.67209 -12.53319 -12.24083 -12.14976 -12.08431 -12.07010 -11.93742 -11.81094 -11.79223 -11.48997 -10.72231 -10.48458 -9.86936 -9.62419 -9.56643 -8.86067 -7.85446 -5.21662 0.21971 0.29964 1.42633 1.48042 1.54097 1.69328 1.98765 2.49867 2.68749 3.31156 3.35667 3.42635 3.71047 3.79940 3.85339 3.93112 3.97057 4.06667 4.10214 4.16858 4.24877 4.28015 4.40159 4.44677 4.47686 4.54203 4.59063 4.67224 4.71123 4.84358 4.88661 4.95792 4.97888 5.00674 5.02380 5.10299 5.17314 5.21159 5.29382 5.40144 5.41442 5.47041 5.53022 5.62604 5.68524 5.78483 6.00256 6.17476 6.52768 7.07742 7.29997 7.75390 8.41760 9.25154 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002571 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.950649 B =10889.884562 C =11500.723548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.502 3.498 5 O -0.571 6.571 6 C -0.118 4.118 7 C -0.062 4.062 8 C -0.124 4.124 9 C -0.094 4.094 10 C -0.124 4.124 11 C -0.093 4.093 12 C -0.158 4.158 13 C 0.074 3.926 14 F -0.153 7.153 15 C 0.152 3.848 16 H 0.110 0.890 17 C -0.136 4.136 18 C 0.196 3.804 19 N -0.623 5.623 20 C -0.244 4.244 21 H 0.081 0.919 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.985 3.015 25 H -0.271 1.271 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.121 3.879 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.018 0.982 45 H -0.007 1.007 46 H 0.247 0.753 47 H 0.032 0.968 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -20.813 22.756 31.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.333 5.333 4 C 0.292 3.708 5 O -0.450 6.450 6 C -0.158 4.158 7 C -0.100 4.100 8 C -0.125 4.125 9 C -0.112 4.112 10 C -0.142 4.142 11 C -0.110 4.110 12 C -0.176 4.176 13 C 0.055 3.945 14 F -0.132 7.132 15 C 0.047 3.953 16 H 0.128 0.872 17 C -0.175 4.175 18 C 0.071 3.929 19 N -0.350 5.350 20 C -0.373 4.373 21 H 0.099 0.901 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.812 3.188 25 H -0.196 1.196 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.005 4.005 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.162 0.838 39 H 0.174 0.826 40 H 0.179 0.821 41 H 0.165 0.835 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.011 0.989 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.899 -20.069 22.577 30.778 hybrid contribution 0.221 1.419 -1.095 1.805 sum -5.678 -18.651 21.482 29.010 Atomic orbital electron populations 1.22200 0.95208 1.03447 1.01788 1.21937 0.95034 0.80105 1.05226 1.48065 1.65414 1.15395 1.04444 1.21290 0.76588 0.86459 0.86463 1.90743 1.46412 1.20002 1.87815 1.21659 1.05001 0.99807 0.89290 1.20155 1.02956 0.96901 0.89969 1.19939 0.92477 1.02063 0.98003 1.21250 0.98653 0.96252 0.95018 1.21591 0.98214 0.98741 0.95636 1.21410 0.91595 0.97699 1.00330 1.21420 1.02257 1.00185 0.93760 1.17935 0.83808 0.99679 0.93124 1.91464 1.57773 1.84628 1.79323 1.22013 0.94236 0.93051 0.86023 0.87230 1.22981 0.98403 0.96630 0.99531 1.20743 0.83311 0.93787 0.95086 1.44633 1.04986 1.37447 1.47924 1.19436 0.88689 1.12454 1.16709 0.90107 1.25745 0.99649 0.99361 1.01515 1.70210 1.21067 1.28391 1.40663 0.85067 0.78000 0.77677 0.78063 1.19617 1.21829 1.20608 1.22014 0.95791 0.89528 0.93139 0.88915 0.93122 0.93471 0.88840 0.87688 0.85975 0.87818 0.92681 0.90410 0.83785 0.82576 0.82145 0.83479 0.90238 0.92510 0.96377 0.98886 0.94374 0.95029 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 71.98 0.74 -1.89 16 2 C 0.10 1.67 5.93 86.38 0.51 2.18 16 3 N -0.60 -16.89 2.56 -790.14 -2.02 -18.91 16 4 C 0.50 15.62 6.96 87.66 0.61 16.23 16 5 O -0.57 -24.22 12.02 -3.03 -0.04 -24.25 16 6 C -0.12 -2.51 4.23 29.85 0.13 -2.38 16 7 C -0.06 -1.47 4.36 29.85 0.13 -1.34 16 8 C -0.12 -2.37 5.14 -19.82 -0.10 -2.47 16 9 C -0.09 -1.33 9.67 22.26 0.22 -1.12 16 10 C -0.12 -1.25 10.04 22.27 0.22 -1.03 16 11 C -0.09 -0.90 10.04 22.26 0.22 -0.68 16 12 C -0.16 -2.21 10.03 22.31 0.22 -1.99 16 13 C 0.07 1.44 7.24 22.38 0.16 1.61 16 14 F -0.15 -3.65 16.67 44.97 0.75 -2.90 16 15 C 0.15 5.58 3.55 46.39 0.16 5.74 16 16 H 0.11 3.62 7.86 -2.39 -0.02 3.60 16 17 C -0.14 -5.85 6.33 31.78 0.20 -5.65 16 18 C 0.20 10.90 5.37 86.73 0.47 11.37 16 19 N -0.62 -35.59 3.39 -691.99 -2.35 -37.94 16 20 C -0.24 -14.82 10.28 84.03 0.86 -13.95 16 21 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 22 C -0.07 -4.26 5.49 84.86 0.47 -3.80 16 23 N -0.95 -61.29 10.31 21.65 0.22 -61.07 16 24 Si 0.98 48.31 29.55 68.60 2.03 50.34 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 28 C 0.12 5.64 6.58 86.86 0.57 6.21 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.86 7.22 -2.39 -0.02 0.84 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.39 7.93 -2.39 -0.02 1.37 16 33 H 0.10 1.21 6.44 -2.39 -0.02 1.20 16 34 H 0.12 1.84 7.40 -2.39 -0.02 1.82 16 35 H 0.10 1.97 7.18 -2.39 -0.02 1.95 16 36 H 0.05 1.61 7.91 -2.39 -0.02 1.59 16 37 H 0.08 1.94 7.96 -2.39 -0.02 1.92 16 38 H 0.14 1.66 8.04 -2.91 -0.02 1.64 16 39 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 40 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 41 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.06 2.63 6.25 -2.39 -0.01 2.61 16 44 H 0.02 1.08 7.38 -2.39 -0.02 1.06 16 45 H -0.01 -0.46 7.50 -2.39 -0.02 -0.47 16 46 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.03 1.62 5.53 -2.39 -0.01 1.61 16 48 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -81.95 384.81 5.33 -76.62 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.95 Total: 11.08 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.79 Total: 7.04 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -4.15 Total: -117.92 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.04 Total: -24.25 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.75 Total: -2.90 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -81.95 5.33 -76.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494921875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.765 kcal (2) G-P(sol) polarization free energy of solvation -81.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds