Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47144 * 2 1 4 4 C 1.34773 * 119.99695 * 269.72019 * 3 2 1 5 5 O 1.21282 * 119.99604 * 184.95783 * 4 3 2 6 6 C 1.50699 * 120.00273 * 4.96356 * 4 3 2 7 7 C 1.52997 * 109.47183 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47183 * 179.97438 * 7 6 4 9 9 C 1.38222 * 120.01393 * 100.00567 * 8 7 6 10 10 C 1.38222 * 120.02638 * 179.97438 * 9 8 7 11 11 C 1.38266 * 120.05286 * 0.02562 * 10 9 8 12 12 C 1.38174 * 120.02256 * 359.97438 * 11 10 9 13 13 C 1.38436 * 120.01502 * 279.72530 * 8 7 6 14 14 F 1.35105 * 120.02142 * 0.02562 * 13 8 7 15 15 C 1.46497 * 119.99961 * 90.00120 * 3 2 1 16 16 H 1.08997 * 110.64364 * 230.86941 * 15 3 2 17 17 C 1.55157 * 110.72243 * 107.53037 * 15 3 2 18 18 C 1.54898 * 101.58394 * 277.13816 * 17 15 3 19 19 N 1.47419 * 104.83432 * 322.98831 * 18 17 15 20 20 C 1.36943 * 125.65097 * 204.09128 * 19 18 17 21 21 H 1.08003 * 119.99614 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99893 * 0.04402 * 20 19 18 23 23 N 1.31622 * 119.99912 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99854 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47031 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47373 * 119.99856 * 24 22 20 27 27 H 1.48496 * 109.46948 * 239.99671 * 24 22 20 28 28 C 1.47026 * 108.70508 * 24.12988 * 19 18 17 29 29 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46933 * 300.00329 * 1 2 3 31 31 H 1.09004 * 109.46879 * 59.99894 * 1 2 3 32 32 H 1.09004 * 109.46933 * 239.99671 * 2 1 3 33 33 H 1.09004 * 109.46879 * 120.00106 * 2 1 3 34 34 H 1.09000 * 109.47294 * 299.99863 * 6 4 3 35 35 H 1.09000 * 109.46958 * 59.99882 * 6 4 3 36 36 H 1.09000 * 109.47384 * 300.00409 * 7 6 4 37 37 H 1.09004 * 109.47047 * 59.99971 * 7 6 4 38 38 H 1.08001 * 119.98411 * 359.94918 * 9 8 7 39 39 H 1.08002 * 119.97071 * 180.02562 * 10 9 8 40 40 H 1.07999 * 119.98632 * 179.97438 * 11 10 9 41 41 H 1.08001 * 120.01121 * 179.97438 * 12 11 10 42 42 H 1.09001 * 111.00380 * 35.21478 * 17 15 3 43 43 H 1.09002 * 111.00457 * 159.05687 * 17 15 3 44 44 H 1.09004 * 110.37266 * 204.14856 * 18 17 15 45 45 H 1.09006 * 110.46366 * 81.87679 * 18 17 15 46 46 H 0.96998 * 119.99485 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.88182 * 239.52844 * 28 19 18 48 48 H 1.08999 * 110.01294 * 118.42323 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2484 2.0146 -1.1672 5 8 2.7371 3.1245 -1.1687 6 6 1.8982 1.3437 -2.4704 7 6 2.2568 2.2705 -3.6336 8 6 1.9072 1.5993 -4.9368 9 6 0.7373 1.9317 -5.5937 10 6 0.4167 1.3167 -6.7893 11 6 1.2652 0.3680 -7.3294 12 6 2.4352 0.0341 -6.6745 13 6 2.7604 0.6538 -5.4796 14 9 3.9066 0.3318 -4.8410 15 6 2.2626 2.0718 1.2687 16 1 1.7665 3.0422 1.2797 17 6 3.7849 2.2262 1.5256 18 6 4.1396 0.8458 2.1321 19 7 2.9764 0.4892 2.9646 20 6 2.9915 -0.3694 4.0314 21 1 2.0817 -0.5661 4.5792 22 6 4.1762 -0.9866 4.4088 23 7 5.2849 -0.7469 3.7411 24 14 4.1967 -2.1583 5.8635 25 1 2.8314 -2.2565 6.4392 26 1 4.6416 -3.5010 5.4114 27 1 5.1335 -1.6483 6.8966 28 6 1.7971 1.2072 2.4594 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.4574 0.4125 -2.5615 35 1 0.8297 1.1295 -2.4931 36 1 1.6973 3.2014 -3.5424 37 1 3.3253 2.4851 -3.6111 38 1 0.0734 2.6720 -5.1723 39 1 -0.4975 1.5774 -7.3020 40 1 1.0134 -0.1122 -8.2634 41 1 3.0977 -0.7073 -7.0963 42 1 4.3236 2.3932 0.5928 43 1 3.9817 3.0280 2.2373 44 1 5.0371 0.9204 2.7463 45 1 4.2816 0.1077 1.3426 46 1 6.1128 -1.1779 4.0052 47 1 1.3877 1.8450 3.2428 48 1 1.0410 0.4957 2.1276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494921876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = -27.345616 kcal Electronic energy + Delta-G solvation = -29317.323932 eV Core-core repulsion = 25287.483103 eV Total energy + Delta-G solvation = -4029.840829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.03578 -40.10633 -39.27286 -37.39722 -34.94761 -34.22855 -32.34631 -30.87890 -30.46240 -29.92281 -28.66238 -27.45930 -25.02991 -24.37980 -23.03927 -22.94517 -21.61856 -20.41506 -19.96177 -18.30656 -17.79423 -17.02526 -16.77565 -16.75327 -16.36243 -15.75602 -15.70129 -15.29399 -14.83020 -14.44526 -14.08539 -14.00772 -13.61168 -13.55183 -13.33529 -13.24152 -12.99451 -12.77589 -12.40521 -12.23107 -12.00905 -11.96898 -11.87310 -11.59116 -11.56735 -11.24284 -11.13809 -10.96985 -10.90937 -10.72344 -10.63318 -10.12824 -10.08219 -9.90113 -9.63854 -9.41034 -9.20838 -8.87325 -8.66753 -8.21455 -6.85261 -5.66095 -3.09054 0.87039 0.91155 2.91555 3.21639 3.37488 3.39061 3.43771 3.46387 4.03550 4.34791 4.46949 4.47212 4.62837 4.84677 4.90447 4.97591 5.05224 5.12758 5.16230 5.36348 5.41372 5.47739 5.50719 5.56167 5.57703 5.64149 5.71018 5.77784 5.77835 5.90618 5.92379 5.93971 6.02823 6.07342 6.08274 6.17208 6.32016 6.37724 6.45664 6.60612 6.61892 6.72412 6.79206 7.10095 7.54867 7.62089 7.77913 7.87238 8.35581 8.49320 9.20236 9.80901 10.45678 11.36997 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002628 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.801376 B =10652.763526 C =10937.577269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.591 5.591 4 C 0.513 3.487 5 O -0.546 6.546 6 C -0.134 4.134 7 C -0.065 4.065 8 C -0.112 4.112 9 C -0.089 4.089 10 C -0.130 4.130 11 C -0.098 4.098 12 C -0.154 4.154 13 C 0.101 3.899 14 F -0.134 7.134 15 C 0.135 3.865 16 H 0.076 0.924 17 C -0.151 4.151 18 C 0.155 3.845 19 N -0.602 5.602 20 C -0.224 4.224 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.122 3.878 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.010 0.990 46 H 0.251 0.749 47 H 0.032 0.968 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 2.730 -20.945 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.029 4.029 3 N -0.323 5.323 4 C 0.301 3.699 5 O -0.424 6.424 6 C -0.174 4.174 7 C -0.102 4.102 8 C -0.113 4.113 9 C -0.107 4.107 10 C -0.148 4.148 11 C -0.116 4.116 12 C -0.172 4.172 13 C 0.082 3.918 14 F -0.113 7.113 15 C 0.032 3.968 16 H 0.094 0.906 17 C -0.190 4.190 18 C 0.030 3.970 19 N -0.329 5.329 20 C -0.352 4.352 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.004 4.004 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.122 0.878 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.546 3.159 -20.766 23.504 hybrid contribution 0.212 -0.887 0.790 1.206 sum -10.334 2.272 -19.976 22.605 Atomic orbital electron populations 1.22268 0.96240 1.02087 1.02057 1.21710 0.93958 0.82746 1.04517 1.47975 1.64594 1.14148 1.05563 1.20451 0.78220 0.86033 0.85169 1.90669 1.43905 1.20342 1.87481 1.21686 1.03419 1.00158 0.92102 1.20288 1.03675 0.97815 0.88458 1.20056 0.95291 0.97736 0.98254 1.21013 0.95414 0.99410 0.94820 1.21211 1.00122 0.97264 0.96232 1.21002 0.93523 0.97332 0.99750 1.21176 0.99180 1.01922 0.94965 1.17643 0.83830 0.97653 0.92672 1.91531 1.47056 1.91456 1.81230 1.22005 0.97663 0.94774 0.82357 0.90583 1.23323 0.94251 1.01020 1.00449 1.21903 0.93320 0.88758 0.92980 1.44551 1.03395 1.51286 1.33628 1.19090 0.94901 1.17006 1.04212 0.90454 1.24797 0.95631 1.00614 0.99518 1.69839 0.99160 1.46469 1.41242 0.86017 0.77327 0.80352 0.81885 1.20554 1.21796 1.21770 1.21721 0.91945 0.94152 0.92570 0.91686 0.91830 0.93072 0.91136 0.87644 0.88969 0.88902 0.89662 0.89729 0.84963 0.85400 0.85189 0.84794 0.91630 0.91567 0.87791 0.97171 0.93777 0.95061 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.88 37.16 0.37 -1.64 16 2 C 0.09 1.39 5.17 -4.04 -0.02 1.36 16 3 N -0.59 -9.77 2.58 -164.02 -0.42 -10.20 16 4 C 0.51 8.28 7.37 -10.99 -0.08 8.20 16 5 O -0.55 -10.44 15.11 5.56 0.08 -10.36 16 6 C -0.13 -1.64 4.35 -27.89 -0.12 -1.76 16 7 C -0.06 -0.76 4.36 -27.89 -0.12 -0.88 16 8 C -0.11 -1.15 5.14 -104.56 -0.54 -1.69 16 9 C -0.09 -0.73 9.67 -39.59 -0.38 -1.11 16 10 C -0.13 -0.91 10.04 -39.58 -0.40 -1.30 16 11 C -0.10 -0.69 10.04 -39.59 -0.40 -1.09 16 12 C -0.15 -1.34 10.03 -39.52 -0.40 -1.73 16 13 C 0.10 1.10 7.24 -39.42 -0.29 0.82 16 14 F -0.13 -1.72 16.66 2.25 0.04 -1.69 16 15 C 0.14 2.53 3.18 -66.09 -0.21 2.32 16 16 H 0.08 1.38 8.13 -51.93 -0.42 0.95 16 17 C -0.15 -3.17 6.53 -24.59 -0.16 -3.33 16 18 C 0.15 3.82 5.87 -2.54 -0.01 3.81 16 19 N -0.60 -14.96 3.06 -170.07 -0.52 -15.48 16 20 C -0.22 -6.07 10.27 -15.06 -0.15 -6.22 16 21 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 24 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 C 0.12 2.47 6.02 -3.06 -0.02 2.45 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.81 6.82 -51.93 -0.35 0.46 16 31 H 0.05 0.53 6.98 -51.93 -0.36 0.17 16 32 H 0.07 0.93 6.46 -51.93 -0.34 0.59 16 33 H 0.11 1.92 6.08 -51.93 -0.32 1.61 16 34 H 0.09 1.13 7.25 -51.93 -0.38 0.76 16 35 H 0.09 0.95 6.98 -51.93 -0.36 0.59 16 36 H 0.08 0.96 7.96 -51.93 -0.41 0.54 16 37 H 0.08 1.13 7.89 -51.93 -0.41 0.72 16 38 H 0.13 0.86 8.04 -52.49 -0.42 0.44 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.07 1.39 7.16 -51.93 -0.37 1.02 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.10 2.92 5.87 -51.93 -0.31 2.61 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.04 0.75 4.28 -51.93 -0.22 0.52 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -31.50 381.82 -9.74 -41.24 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.18 Total: 2.19 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.03 Total: -2.16 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.38 Total: -51.79 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.50 -9.74 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494921876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.899 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds