Wall clock time and date at job start Tue Mar 31 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47144 * 2 1 4 4 C 1.34773 * 119.99695 * 269.72019 * 3 2 1 5 5 O 1.21282 * 119.99604 * 184.95783 * 4 3 2 6 6 C 1.50699 * 120.00273 * 4.96356 * 4 3 2 7 7 C 1.52997 * 109.47183 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47183 * 179.97438 * 7 6 4 9 9 C 1.38222 * 120.01393 * 100.00567 * 8 7 6 10 10 C 1.38222 * 120.02638 * 179.97438 * 9 8 7 11 11 C 1.38266 * 120.05286 * 0.02562 * 10 9 8 12 12 C 1.38174 * 120.02256 * 359.97438 * 11 10 9 13 13 C 1.38436 * 120.01502 * 279.72530 * 8 7 6 14 14 F 1.35105 * 120.02142 * 0.02562 * 13 8 7 15 15 C 1.46497 * 119.99961 * 90.00120 * 3 2 1 16 16 H 1.08997 * 110.64364 * 230.86941 * 15 3 2 17 17 C 1.55157 * 110.72243 * 107.53037 * 15 3 2 18 18 C 1.54898 * 101.58394 * 277.13816 * 17 15 3 19 19 N 1.47419 * 104.83432 * 322.98831 * 18 17 15 20 20 C 1.36943 * 125.65097 * 204.09128 * 19 18 17 21 21 H 1.08003 * 119.99614 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99893 * 0.04402 * 20 19 18 23 23 N 1.31622 * 119.99912 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99854 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47031 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47373 * 119.99856 * 24 22 20 27 27 H 1.48496 * 109.46948 * 239.99671 * 24 22 20 28 28 C 1.47026 * 108.70508 * 24.12988 * 19 18 17 29 29 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46933 * 300.00329 * 1 2 3 31 31 H 1.09004 * 109.46879 * 59.99894 * 1 2 3 32 32 H 1.09004 * 109.46933 * 239.99671 * 2 1 3 33 33 H 1.09004 * 109.46879 * 120.00106 * 2 1 3 34 34 H 1.09000 * 109.47294 * 299.99863 * 6 4 3 35 35 H 1.09000 * 109.46958 * 59.99882 * 6 4 3 36 36 H 1.09000 * 109.47384 * 300.00409 * 7 6 4 37 37 H 1.09004 * 109.47047 * 59.99971 * 7 6 4 38 38 H 1.08001 * 119.98411 * 359.94918 * 9 8 7 39 39 H 1.08002 * 119.97071 * 180.02562 * 10 9 8 40 40 H 1.07999 * 119.98632 * 179.97438 * 11 10 9 41 41 H 1.08001 * 120.01121 * 179.97438 * 12 11 10 42 42 H 1.09001 * 111.00380 * 35.21478 * 17 15 3 43 43 H 1.09002 * 111.00457 * 159.05687 * 17 15 3 44 44 H 1.09004 * 110.37266 * 204.14856 * 18 17 15 45 45 H 1.09006 * 110.46366 * 81.87679 * 18 17 15 46 46 H 0.96998 * 119.99485 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.88182 * 239.52844 * 28 19 18 48 48 H 1.08999 * 110.01294 * 118.42323 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2484 2.0146 -1.1672 5 8 2.7371 3.1245 -1.1687 6 6 1.8982 1.3437 -2.4704 7 6 2.2568 2.2705 -3.6336 8 6 1.9072 1.5993 -4.9368 9 6 0.7373 1.9317 -5.5937 10 6 0.4167 1.3167 -6.7893 11 6 1.2652 0.3680 -7.3294 12 6 2.4352 0.0341 -6.6745 13 6 2.7604 0.6538 -5.4796 14 9 3.9066 0.3318 -4.8410 15 6 2.2626 2.0718 1.2687 16 1 1.7665 3.0422 1.2797 17 6 3.7849 2.2262 1.5256 18 6 4.1396 0.8458 2.1321 19 7 2.9764 0.4892 2.9646 20 6 2.9915 -0.3694 4.0314 21 1 2.0817 -0.5661 4.5792 22 6 4.1762 -0.9866 4.4088 23 7 5.2849 -0.7469 3.7411 24 14 4.1967 -2.1583 5.8635 25 1 2.8314 -2.2565 6.4392 26 1 4.6416 -3.5010 5.4114 27 1 5.1335 -1.6483 6.8966 28 6 1.7971 1.2072 2.4594 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.4574 0.4125 -2.5615 35 1 0.8297 1.1295 -2.4931 36 1 1.6973 3.2014 -3.5424 37 1 3.3253 2.4851 -3.6111 38 1 0.0734 2.6720 -5.1723 39 1 -0.4975 1.5774 -7.3020 40 1 1.0134 -0.1122 -8.2634 41 1 3.0977 -0.7073 -7.0963 42 1 4.3236 2.3932 0.5928 43 1 3.9817 3.0280 2.2373 44 1 5.0371 0.9204 2.7463 45 1 4.2816 0.1077 1.3426 46 1 6.1128 -1.1779 4.0052 47 1 1.3877 1.8450 3.2428 48 1 1.0410 0.4957 2.1276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494921876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:21 Heat of formation + Delta-G solvation = -43.348565 kcal Electronic energy + Delta-G solvation = -29318.017872 eV Core-core repulsion = 25287.483103 eV Total energy + Delta-G solvation = -4030.534768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.88677 -41.44691 -39.99015 -38.96754 -36.46037 -35.17307 -34.15686 -31.98491 -31.51363 -30.85991 -30.26340 -29.10994 -26.54764 -25.75354 -24.15975 -23.67605 -22.58660 -22.01997 -21.53362 -19.66498 -18.94376 -18.54227 -18.09527 -17.75490 -17.44211 -16.85051 -16.59458 -16.49964 -16.41138 -15.72567 -15.46497 -15.04837 -15.01641 -14.63323 -14.59345 -14.14638 -14.02418 -13.87992 -13.71049 -13.55668 -13.46282 -13.39261 -12.96726 -12.90768 -12.76513 -12.61700 -12.61111 -12.34581 -12.18424 -11.97002 -11.96212 -11.86578 -11.79613 -11.66392 -11.53749 -10.77206 -10.74482 -9.87405 -9.61959 -9.57081 -8.89482 -7.76566 -5.21584 0.21565 0.29894 1.47672 1.48538 1.58813 1.63126 2.00541 2.49762 2.68667 3.34725 3.35985 3.38025 3.66569 3.76910 3.80187 3.94014 3.99594 4.01975 4.05786 4.15401 4.23142 4.28042 4.38313 4.43518 4.45531 4.52987 4.58145 4.65296 4.67822 4.82761 4.83861 4.95943 4.97733 4.99325 5.03754 5.10016 5.16332 5.18005 5.29486 5.38532 5.46623 5.47298 5.52248 5.56689 5.66458 5.78134 6.00241 6.27698 6.48002 7.09216 7.18807 7.76615 8.41278 9.25675 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002628 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.801376 B =10652.763526 C =10937.577269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.510 3.490 5 O -0.579 6.579 6 C -0.122 4.122 7 C -0.058 4.058 8 C -0.125 4.125 9 C -0.090 4.090 10 C -0.123 4.123 11 C -0.093 4.093 12 C -0.161 4.161 13 C 0.069 3.931 14 F -0.156 7.156 15 C 0.146 3.854 16 H 0.090 0.910 17 C -0.140 4.140 18 C 0.168 3.832 19 N -0.617 5.617 20 C -0.231 4.231 21 H 0.087 0.913 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.980 3.020 25 H -0.263 1.263 26 H -0.294 1.294 27 H -0.296 1.296 28 C 0.123 3.877 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.144 0.856 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.068 0.932 45 H -0.016 1.016 46 H 0.245 0.755 47 H 0.039 0.961 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.382 2.400 -22.681 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.028 4.028 3 N -0.326 5.326 4 C 0.300 3.700 5 O -0.460 6.460 6 C -0.161 4.161 7 C -0.096 4.096 8 C -0.126 4.126 9 C -0.108 4.108 10 C -0.141 4.141 11 C -0.111 4.111 12 C -0.179 4.179 13 C 0.050 3.950 14 F -0.135 7.135 15 C 0.042 3.958 16 H 0.108 0.892 17 C -0.180 4.180 18 C 0.043 3.957 19 N -0.344 5.344 20 C -0.359 4.359 21 H 0.105 0.895 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.809 3.191 25 H -0.187 1.187 26 H -0.222 1.222 27 H -0.223 1.223 28 C -0.002 4.002 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.169 0.831 39 H 0.177 0.823 40 H 0.178 0.822 41 H 0.161 0.839 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.002 0.998 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.987 2.826 -22.513 26.654 hybrid contribution 1.236 -0.767 1.238 1.910 sum -12.751 2.059 -21.275 24.889 Atomic orbital electron populations 1.22186 0.93373 1.03432 1.02697 1.21764 0.96196 0.81386 1.03494 1.48064 1.64725 1.14780 1.04987 1.21123 0.77198 0.85674 0.86025 1.90652 1.45313 1.22019 1.87986 1.21668 1.05061 0.99581 0.89833 1.20155 1.01962 0.98095 0.89368 1.19978 0.96439 0.98241 0.97955 1.21276 0.94694 0.99633 0.95184 1.21613 1.00883 0.96144 0.95487 1.21408 0.92420 0.96861 1.00393 1.21415 1.00192 1.02011 0.94318 1.18032 0.83790 0.99213 0.93976 1.91471 1.48357 1.91830 1.81839 1.21804 0.95476 0.95366 0.83145 0.89212 1.23139 0.96367 0.98677 0.99774 1.21527 0.92421 0.90067 0.91691 1.44734 1.04876 1.51423 1.33358 1.19487 0.95145 1.16803 1.04505 0.89515 1.25640 0.95447 1.02696 1.02317 1.70095 0.99495 1.47642 1.42866 0.84974 0.77792 0.77799 0.78539 1.18708 1.22158 1.22302 1.21857 0.90778 0.94393 0.93175 0.89990 0.92609 0.90929 0.89605 0.91297 0.89105 0.85966 0.89260 0.92567 0.83138 0.82319 0.82229 0.83855 0.92265 0.91395 0.91438 0.99795 0.94543 0.94345 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.88 71.98 0.71 -2.61 16 2 C 0.09 2.67 5.17 86.38 0.45 3.12 16 3 N -0.59 -19.26 2.58 -791.24 -2.04 -21.30 16 4 C 0.51 16.19 7.37 87.66 0.65 16.84 16 5 O -0.58 -22.28 15.11 -3.04 -0.05 -22.32 16 6 C -0.12 -2.84 4.35 29.85 0.13 -2.71 16 7 C -0.06 -1.34 4.36 29.85 0.13 -1.21 16 8 C -0.13 -2.43 5.14 -19.82 -0.10 -2.54 16 9 C -0.09 -1.22 9.67 22.26 0.22 -1.00 16 10 C -0.12 -1.24 10.04 22.27 0.22 -1.02 16 11 C -0.09 -1.00 10.04 22.26 0.22 -0.78 16 12 C -0.16 -2.56 10.03 22.31 0.22 -2.33 16 13 C 0.07 1.48 7.24 22.37 0.16 1.64 16 14 F -0.16 -4.20 16.66 44.97 0.75 -3.45 16 15 C 0.15 5.40 3.18 46.18 0.15 5.55 16 16 H 0.09 3.13 8.13 -2.39 -0.02 3.11 16 17 C -0.14 -6.03 6.53 31.98 0.21 -5.82 16 18 C 0.17 8.67 5.87 86.85 0.51 9.18 16 19 N -0.62 -31.19 3.06 -691.98 -2.12 -33.31 16 20 C -0.23 -12.59 10.27 84.03 0.86 -11.73 16 21 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 22 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 23 N -0.95 -57.35 10.09 21.65 0.22 -57.13 16 24 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 28 C 0.12 4.89 6.02 86.73 0.52 5.42 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.27 6.82 -2.39 -0.02 1.25 16 31 H 0.07 1.23 6.98 -2.38 -0.02 1.21 16 32 H 0.09 2.16 6.46 -2.39 -0.02 2.15 16 33 H 0.07 2.51 6.08 -2.38 -0.01 2.50 16 34 H 0.09 2.18 7.25 -2.39 -0.02 2.17 16 35 H 0.12 2.13 6.98 -2.39 -0.02 2.11 16 36 H 0.09 1.93 7.96 -2.39 -0.02 1.91 16 37 H 0.06 1.59 7.89 -2.38 -0.02 1.57 16 38 H 0.15 1.43 8.04 -2.91 -0.02 1.41 16 39 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 40 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.06 2.61 7.16 -2.39 -0.02 2.59 16 43 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 44 H 0.07 4.01 5.87 -2.38 -0.01 3.99 16 45 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 46 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.06 2.16 4.28 -2.39 -0.01 2.15 16 Total: -1.00 -71.42 381.82 5.48 -65.95 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.96 Total: 17.54 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.73 Total: 6.59 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -3.94 Total: -111.74 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.75 Total: -3.45 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -71.42 5.48 -65.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494921876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.598 kcal (2) G-P(sol) polarization free energy of solvation -71.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds