Wall clock time and date at job start Tue Mar 31 2020 18:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00306 * 2 1 4 4 C 1.53004 * 109.46712 * 89.99862 * 3 2 1 5 5 C 1.53002 * 109.46684 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47210 * 180.02562 * 5 4 3 7 7 C 1.36939 * 120.00366 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99436 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00077 * 179.97438 * 7 6 5 10 10 N 1.31624 * 120.00127 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00273 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47202 * 89.99700 * 11 9 7 13 13 H 1.48502 * 109.47232 * 210.00195 * 11 9 7 14 14 H 1.48508 * 109.46954 * 329.99998 * 11 9 7 15 15 C 1.34783 * 119.99937 * 180.02562 * 2 1 3 16 16 O 1.21280 * 120.00131 * 185.59417 * 15 2 1 17 17 C 1.50697 * 119.99643 * 5.59194 * 15 2 1 18 18 C 1.50694 * 112.85362 * 294.53412 * 17 15 2 19 19 C 1.38220 * 120.01149 * 124.01223 * 18 17 15 20 20 C 1.38228 * 120.02430 * 179.72813 * 19 18 17 21 21 C 1.38268 * 120.04810 * 0.54536 * 20 19 18 22 22 C 1.38178 * 120.02932 * 359.72926 * 21 20 19 23 23 C 1.38438 * 120.01406 * 304.28804 * 18 17 15 24 24 F 1.35102 * 120.02625 * 0.02562 * 23 18 17 25 25 C 1.53786 * 113.60897 * 163.22968 * 17 15 2 26 26 C 1.53784 * 87.08022 * 270.88208 * 25 17 15 27 27 C 1.53779 * 87.08394 * 334.56880 * 26 25 17 28 28 H 1.09002 * 109.46930 * 264.90775 * 1 2 3 29 29 H 1.08999 * 109.46999 * 24.90837 * 1 2 3 30 30 H 1.09007 * 109.47128 * 144.90524 * 1 2 3 31 31 H 1.09001 * 109.47536 * 210.00217 * 3 2 1 32 32 H 1.09000 * 109.47269 * 330.00410 * 3 2 1 33 33 H 1.08994 * 109.47849 * 299.99938 * 4 3 2 34 34 H 1.08999 * 109.47130 * 60.00973 * 4 3 2 35 35 H 1.09001 * 109.47410 * 300.00260 * 5 4 3 36 36 H 1.09000 * 109.47423 * 60.00470 * 5 4 3 37 37 H 0.97005 * 119.99320 * 359.97438 * 6 5 4 38 38 H 0.97000 * 119.99980 * 179.97438 * 10 9 7 39 39 H 1.07998 * 119.99046 * 359.97438 * 19 18 17 40 40 H 1.07992 * 119.97551 * 180.27514 * 20 19 18 41 41 H 1.08002 * 119.98803 * 179.75035 * 21 20 19 42 42 H 1.07998 * 120.01132 * 180.02562 * 22 21 20 43 43 H 1.08997 * 113.61967 * 25.43155 * 25 17 15 44 44 H 1.09006 * 113.61354 * 156.33747 * 25 17 15 45 45 H 1.09001 * 113.61168 * 220.01537 * 26 25 17 46 46 H 1.08995 * 113.61115 * 89.12047 * 26 25 17 47 47 H 1.08997 * 113.61100 * 270.88318 * 27 26 25 48 48 H 1.08997 * 113.61682 * 139.97641 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 6 3.2170 3.0356 1.4426 6 7 3.4617 3.4582 2.8238 7 6 4.1341 4.6246 3.0741 8 1 4.4837 5.2331 2.2532 9 6 4.3655 5.0253 4.3828 10 7 3.9381 4.2843 5.3832 11 14 5.2821 6.6167 4.7243 12 1 4.3117 7.7370 4.8153 13 1 6.0215 6.4967 6.0065 14 1 6.2418 6.8813 3.6223 15 6 2.1389 -1.1673 -0.0005 16 8 3.3474 -1.1699 0.1019 17 6 1.3907 -2.4691 -0.1283 18 6 0.4954 -2.7478 1.0514 19 6 -0.8534 -2.9784 0.8563 20 6 -1.6739 -3.2396 1.9377 21 6 -1.1486 -3.2594 3.2165 22 6 0.1984 -3.0235 3.4145 23 6 1.0224 -2.7673 2.3314 24 9 2.3394 -2.5359 2.5238 25 6 2.2848 -3.6575 -0.5197 26 6 1.9994 -3.2883 -1.9850 27 6 0.6930 -2.6479 -1.4871 28 1 -0.3633 -0.0912 1.0236 29 1 -0.3633 0.9321 -0.4328 30 1 -0.3634 -0.8409 -0.5909 31 1 3.1500 1.1384 -0.5139 32 1 1.6085 2.0284 -0.5138 33 1 1.5002 1.8407 1.9564 34 1 3.0416 0.9506 1.9563 35 1 4.1694 2.9057 0.9286 36 1 2.6276 3.7951 0.9289 37 1 3.1468 2.9121 3.5611 38 1 4.1002 4.5641 6.2978 39 1 -1.2657 -2.9585 -0.1417 40 1 -2.7268 -3.4241 1.7839 41 1 -1.7913 -3.4596 4.0611 42 1 0.6085 -3.0394 4.4135 43 1 3.3289 -3.5315 -0.2331 44 1 1.8781 -4.6253 -0.2261 45 1 1.8437 -4.1526 -2.6307 46 1 2.7069 -2.5706 -2.4002 47 1 -0.1489 -3.3396 -1.4579 48 1 0.4520 -1.7067 -1.9812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498637040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:44 Heat of formation + Delta-G solvation = -14.320865 kcal Electronic energy + Delta-G solvation = -29705.543406 eV Core-core repulsion = 25676.267373 eV Total energy + Delta-G solvation = -4029.276033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.88348 -41.33974 -38.97170 -37.65384 -36.01501 -34.76113 -32.28062 -31.59754 -30.79626 -29.78113 -27.10619 -26.71273 -26.10711 -24.86127 -23.02105 -22.82630 -22.10810 -21.06349 -20.56891 -18.59539 -18.00062 -17.03252 -16.96278 -16.53639 -16.32839 -15.92557 -15.62860 -15.36212 -14.89078 -14.65500 -14.46850 -14.39510 -14.17293 -13.48456 -13.39379 -13.21210 -12.99572 -12.93880 -12.82488 -12.59033 -12.46409 -12.31669 -12.10162 -11.82665 -11.77471 -11.57094 -11.17387 -10.87223 -10.80517 -10.77960 -10.67091 -10.57091 -10.31635 -10.03175 -9.82292 -9.65527 -9.17869 -8.82208 -8.80256 -8.60416 -6.84441 -5.69241 -2.97802 0.85750 0.92765 2.57688 2.94838 3.28001 3.48183 3.52726 3.55197 3.97519 4.17655 4.20340 4.28446 4.34065 4.51611 4.60770 4.65770 4.69067 4.95534 4.97741 5.00111 5.12273 5.25679 5.30696 5.33010 5.36318 5.48571 5.53940 5.57266 5.62440 5.63435 5.75441 5.75764 5.78062 5.85455 5.94058 5.97155 5.99369 6.08255 6.10249 6.16764 6.37779 6.46910 6.60796 6.61651 6.94546 6.97164 7.37557 7.76066 8.19675 8.49623 9.60252 10.19600 10.54391 11.53909 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.002916 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.734439 B = 9599.461975 C =10458.680298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.609 5.609 3 C 0.121 3.879 4 C -0.138 4.138 5 C 0.157 3.843 6 N -0.733 5.733 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.540 3.460 16 O -0.518 6.518 17 C -0.065 4.065 18 C -0.102 4.102 19 C -0.090 4.090 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.152 4.152 23 C 0.112 3.888 24 F -0.125 7.125 25 C -0.113 4.113 26 C -0.139 4.139 27 C -0.128 4.128 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.954 -21.035 -14.321 30.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C -0.002 4.002 4 C -0.177 4.177 5 C 0.029 3.971 6 N -0.377 5.377 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.218 1.218 13 H -0.218 1.218 14 H -0.207 1.207 15 C 0.326 3.674 16 O -0.393 6.393 17 C -0.068 4.068 18 C -0.104 4.104 19 C -0.108 4.108 20 C -0.149 4.149 21 C -0.109 4.109 22 C -0.170 4.170 23 C 0.092 3.908 24 F -0.103 7.103 25 C -0.151 4.151 26 C -0.176 4.176 27 C -0.165 4.165 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.139 -20.852 -14.292 29.467 hybrid contribution 0.456 0.855 0.850 1.289 sum -14.683 -19.997 -13.443 28.217 Atomic orbital electron populations 1.22010 0.79779 1.03085 1.02131 1.47759 1.06897 1.06070 1.73492 1.21529 0.97286 0.83269 0.98078 1.22043 1.01020 0.98942 0.95726 1.20538 0.95983 0.91875 0.88700 1.42360 1.68339 1.25892 1.01127 1.19254 1.27778 0.98042 0.91809 0.91169 1.24752 1.01823 0.99053 0.95562 1.69675 1.51672 1.38862 0.98115 0.86170 0.79344 0.83265 0.77321 1.21768 1.21776 1.20746 1.19634 0.87377 0.84082 0.76338 1.90724 1.13861 1.86596 1.48074 1.20839 0.96963 0.95344 0.93689 1.19451 0.94751 1.04031 0.92119 1.20962 0.91480 0.98583 0.99771 1.21166 1.00159 1.01195 0.92374 1.21053 0.94153 0.98013 0.97658 1.21251 0.94325 1.02784 0.98683 1.17667 0.78834 1.00692 0.93572 1.91610 1.31457 1.91456 1.95807 1.22870 1.00966 0.95682 0.95536 1.22826 0.97071 1.01099 0.96636 1.23166 0.98074 1.01946 0.93318 0.92646 0.90776 0.90859 0.89931 0.90477 0.92161 0.91500 0.96259 0.96483 0.78326 0.93580 0.84699 0.85223 0.84994 0.84509 0.89354 0.89352 0.90686 0.89741 0.88485 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 8.96 59.85 0.54 1.24 16 2 N -0.61 -8.06 2.87 -181.57 -0.52 -8.58 16 3 C 0.12 1.78 5.41 -4.04 -0.02 1.76 16 4 C -0.14 -2.57 5.65 -26.73 -0.15 -2.72 16 5 C 0.16 3.45 6.26 -4.04 -0.03 3.42 16 6 N -0.73 -20.15 5.60 -59.91 -0.34 -20.49 16 7 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 10 N -0.93 -29.59 13.06 55.49 0.72 -28.87 16 11 Si 0.91 23.27 29.55 -169.99 -5.02 18.25 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 15 C 0.54 7.88 5.30 -10.98 -0.06 7.82 16 16 O -0.52 -9.71 15.52 5.56 0.09 -9.63 16 17 C -0.07 -0.70 0.28 -156.00 -0.04 -0.75 16 18 C -0.10 -1.06 3.67 -104.56 -0.38 -1.45 16 19 C -0.09 -0.67 8.04 -39.59 -0.32 -0.98 16 20 C -0.13 -0.89 10.05 -39.57 -0.40 -1.29 16 21 C -0.09 -0.72 10.04 -39.59 -0.40 -1.11 16 22 C -0.15 -1.59 10.03 -39.51 -0.40 -1.99 16 23 C 0.11 1.42 7.07 -39.42 -0.28 1.15 16 24 F -0.13 -2.05 15.97 2.25 0.04 -2.01 16 25 C -0.11 -1.18 7.09 -25.91 -0.18 -1.36 16 26 C -0.14 -1.17 7.80 -25.92 -0.20 -1.37 16 27 C -0.13 -0.95 5.29 -25.92 -0.14 -1.08 16 28 H 0.05 0.58 8.01 -51.93 -0.42 0.16 16 29 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 30 H 0.07 0.54 3.85 -51.93 -0.20 0.34 16 31 H 0.08 1.31 7.51 -51.93 -0.39 0.92 16 32 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 11.11 7.67 -40.82 -0.31 10.80 16 38 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.14 0.65 5.91 -52.49 -0.31 0.34 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.09 1.14 7.34 -51.93 -0.38 0.76 16 44 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.10 0.50 6.26 -51.93 -0.33 0.17 16 48 H 0.08 0.56 6.82 -51.93 -0.35 0.20 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -36.24 386.66 -9.19 -45.43 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.28 Total: 6.57 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.71 Total: -6.50 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.13 Total: -57.94 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.24 -9.19 -45.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498637040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.107 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds