Wall clock time and date at job start Tue Mar 31 2020 18:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00306 * 2 1 4 4 C 1.53004 * 109.46712 * 89.99862 * 3 2 1 5 5 C 1.53002 * 109.46684 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47210 * 180.02562 * 5 4 3 7 7 C 1.36939 * 120.00366 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99436 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00077 * 179.97438 * 7 6 5 10 10 N 1.31624 * 120.00127 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00273 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47202 * 89.99700 * 11 9 7 13 13 H 1.48502 * 109.47232 * 210.00195 * 11 9 7 14 14 H 1.48508 * 109.46954 * 329.99998 * 11 9 7 15 15 C 1.34783 * 119.99937 * 180.02562 * 2 1 3 16 16 O 1.21280 * 120.00131 * 185.59417 * 15 2 1 17 17 C 1.50697 * 119.99643 * 5.59194 * 15 2 1 18 18 C 1.50694 * 112.85362 * 294.53412 * 17 15 2 19 19 C 1.38220 * 120.01149 * 124.01223 * 18 17 15 20 20 C 1.38228 * 120.02430 * 179.72813 * 19 18 17 21 21 C 1.38268 * 120.04810 * 0.54536 * 20 19 18 22 22 C 1.38178 * 120.02932 * 359.72926 * 21 20 19 23 23 C 1.38438 * 120.01406 * 304.28804 * 18 17 15 24 24 F 1.35102 * 120.02625 * 0.02562 * 23 18 17 25 25 C 1.53786 * 113.60897 * 163.22968 * 17 15 2 26 26 C 1.53784 * 87.08022 * 270.88208 * 25 17 15 27 27 C 1.53779 * 87.08394 * 334.56880 * 26 25 17 28 28 H 1.09002 * 109.46930 * 264.90775 * 1 2 3 29 29 H 1.08999 * 109.46999 * 24.90837 * 1 2 3 30 30 H 1.09007 * 109.47128 * 144.90524 * 1 2 3 31 31 H 1.09001 * 109.47536 * 210.00217 * 3 2 1 32 32 H 1.09000 * 109.47269 * 330.00410 * 3 2 1 33 33 H 1.08994 * 109.47849 * 299.99938 * 4 3 2 34 34 H 1.08999 * 109.47130 * 60.00973 * 4 3 2 35 35 H 1.09001 * 109.47410 * 300.00260 * 5 4 3 36 36 H 1.09000 * 109.47423 * 60.00470 * 5 4 3 37 37 H 0.97005 * 119.99320 * 359.97438 * 6 5 4 38 38 H 0.97000 * 119.99980 * 179.97438 * 10 9 7 39 39 H 1.07998 * 119.99046 * 359.97438 * 19 18 17 40 40 H 1.07992 * 119.97551 * 180.27514 * 20 19 18 41 41 H 1.08002 * 119.98803 * 179.75035 * 21 20 19 42 42 H 1.07998 * 120.01132 * 180.02562 * 22 21 20 43 43 H 1.08997 * 113.61967 * 25.43155 * 25 17 15 44 44 H 1.09006 * 113.61354 * 156.33747 * 25 17 15 45 45 H 1.09001 * 113.61168 * 220.01537 * 26 25 17 46 46 H 1.08995 * 113.61115 * 89.12047 * 26 25 17 47 47 H 1.08997 * 113.61100 * 270.88318 * 27 26 25 48 48 H 1.08997 * 113.61682 * 139.97641 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 6 3.2170 3.0356 1.4426 6 7 3.4617 3.4582 2.8238 7 6 4.1341 4.6246 3.0741 8 1 4.4837 5.2331 2.2532 9 6 4.3655 5.0253 4.3828 10 7 3.9381 4.2843 5.3832 11 14 5.2821 6.6167 4.7243 12 1 4.3117 7.7370 4.8153 13 1 6.0215 6.4967 6.0065 14 1 6.2418 6.8813 3.6223 15 6 2.1389 -1.1673 -0.0005 16 8 3.3474 -1.1699 0.1019 17 6 1.3907 -2.4691 -0.1283 18 6 0.4954 -2.7478 1.0514 19 6 -0.8534 -2.9784 0.8563 20 6 -1.6739 -3.2396 1.9377 21 6 -1.1486 -3.2594 3.2165 22 6 0.1984 -3.0235 3.4145 23 6 1.0224 -2.7673 2.3314 24 9 2.3394 -2.5359 2.5238 25 6 2.2848 -3.6575 -0.5197 26 6 1.9994 -3.2883 -1.9850 27 6 0.6930 -2.6479 -1.4871 28 1 -0.3633 -0.0912 1.0236 29 1 -0.3633 0.9321 -0.4328 30 1 -0.3634 -0.8409 -0.5909 31 1 3.1500 1.1384 -0.5139 32 1 1.6085 2.0284 -0.5138 33 1 1.5002 1.8407 1.9564 34 1 3.0416 0.9506 1.9563 35 1 4.1694 2.9057 0.9286 36 1 2.6276 3.7951 0.9289 37 1 3.1468 2.9121 3.5611 38 1 4.1002 4.5641 6.2978 39 1 -1.2657 -2.9585 -0.1417 40 1 -2.7268 -3.4241 1.7839 41 1 -1.7913 -3.4596 4.0611 42 1 0.6085 -3.0394 4.4135 43 1 3.3289 -3.5315 -0.2331 44 1 1.8781 -4.6253 -0.2261 45 1 1.8437 -4.1526 -2.6307 46 1 2.7069 -2.5706 -2.4002 47 1 -0.1489 -3.3396 -1.4579 48 1 0.4520 -1.7067 -1.9812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498637040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:42 Heat of formation + Delta-G solvation = -37.319214 kcal Electronic energy + Delta-G solvation = -29706.540689 eV Core-core repulsion = 25676.267373 eV Total energy + Delta-G solvation = -4030.273316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.92820 -42.22092 -39.82775 -38.52201 -37.43588 -36.46607 -34.11500 -32.44285 -31.60622 -31.43734 -28.07900 -27.89541 -26.81199 -26.29038 -24.66589 -23.60880 -22.96612 -22.62205 -21.62141 -19.54376 -19.20378 -18.80312 -17.90888 -17.47792 -17.31226 -16.84608 -16.71440 -16.59032 -16.17887 -16.06860 -15.67467 -15.41111 -15.21080 -15.12002 -14.90381 -14.28502 -14.24102 -13.94989 -13.67067 -13.58970 -13.48396 -13.27664 -13.02755 -12.98685 -12.80334 -12.74149 -12.71753 -12.45446 -12.23685 -12.10857 -11.91977 -11.88704 -11.83342 -11.48753 -11.30938 -10.99232 -10.87555 -9.88253 -9.74494 -9.59150 -9.08311 -7.99877 -5.31118 0.15446 0.24278 1.43316 1.47070 1.50819 1.55688 1.94105 2.52618 2.61100 3.25537 3.33167 3.39957 3.43436 3.50159 3.60512 3.80684 3.81608 3.90543 3.98003 4.15046 4.18450 4.30268 4.33450 4.40030 4.44547 4.47614 4.54096 4.61663 4.67065 4.70296 4.75280 4.79289 4.88521 4.93550 4.98332 5.02710 5.07655 5.11509 5.21849 5.21920 5.26046 5.34569 5.40477 5.43073 5.47481 5.52551 5.95206 6.21321 6.33791 7.11619 7.26329 8.00335 8.24873 9.24215 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.002916 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.734439 B = 9599.461975 C =10458.680298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.609 5.609 3 C 0.128 3.872 4 C -0.119 4.119 5 C 0.157 3.843 6 N -0.750 5.750 7 C -0.252 4.252 8 H 0.079 0.921 9 C -0.079 4.079 10 N -0.973 5.973 11 Si 0.982 3.018 12 H -0.280 1.280 13 H -0.294 1.294 14 H -0.268 1.268 15 C 0.530 3.470 16 O -0.577 6.577 17 C -0.070 4.070 18 C -0.107 4.107 19 C -0.080 4.080 20 C -0.115 4.115 21 C -0.090 4.090 22 C -0.170 4.170 23 C 0.061 3.939 24 F -0.163 7.163 25 C -0.122 4.122 26 C -0.134 4.134 27 C -0.108 4.108 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.039 0.961 37 H 0.370 0.630 38 H 0.252 0.748 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.128 0.872 43 H 0.046 0.954 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.136 0.864 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.953 -21.156 -16.789 33.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.340 5.340 3 C 0.004 3.996 4 C -0.158 4.158 5 C 0.030 3.970 6 N -0.393 5.393 7 C -0.383 4.383 8 H 0.097 0.903 9 C -0.271 4.271 10 N -0.624 5.624 11 Si 0.810 3.190 12 H -0.207 1.207 13 H -0.221 1.221 14 H -0.193 1.193 15 C 0.319 3.681 16 O -0.456 6.456 17 C -0.073 4.073 18 C -0.108 4.108 19 C -0.097 4.097 20 C -0.133 4.133 21 C -0.107 4.107 22 C -0.189 4.189 23 C 0.042 3.958 24 F -0.142 7.142 25 C -0.159 4.159 26 C -0.172 4.172 27 C -0.145 4.145 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.057 0.943 37 H 0.201 0.799 38 H 0.061 0.939 39 H 0.192 0.808 40 H 0.188 0.812 41 H 0.175 0.825 42 H 0.146 0.854 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.080 0.920 47 H 0.154 0.846 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.184 -20.972 -16.811 33.022 hybrid contribution 1.658 0.826 1.650 2.481 sum -17.526 -20.147 -15.161 30.706 Atomic orbital electron populations 1.22308 0.77031 1.05714 1.02463 1.47871 1.08581 1.05021 1.72557 1.21382 0.97889 0.85169 0.95125 1.21833 0.99651 0.96066 0.98280 1.20695 0.96358 0.93837 0.86103 1.42629 1.68340 1.25439 1.02869 1.19706 1.27583 0.98680 0.92339 0.90299 1.25714 1.03172 1.02901 0.95333 1.69856 1.53246 1.40918 0.98341 0.85019 0.78115 0.78821 0.77061 1.20699 1.22082 1.19323 1.20452 0.87030 0.85731 0.74928 1.90688 1.16657 1.87574 1.50641 1.20827 0.97464 0.92899 0.96113 1.19539 0.96051 1.04597 0.90594 1.21394 0.89676 0.96727 1.01930 1.21669 1.01917 0.98453 0.91236 1.21425 0.92865 0.96828 0.99619 1.21396 0.95750 1.03853 0.97936 1.18266 0.77758 1.03978 0.95773 1.91510 1.34267 1.92296 1.96141 1.22937 0.98775 0.96657 0.97579 1.22780 0.97349 1.01679 0.95354 1.23249 0.98238 1.03208 0.89795 0.93492 0.88434 0.87909 0.91598 0.86746 0.91973 0.95563 0.96915 0.94345 0.79888 0.93895 0.80807 0.81161 0.82498 0.85426 0.93555 0.87617 0.87958 0.91985 0.84643 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.96 127.77 1.14 2.22 16 2 N -0.61 -15.92 2.87 -846.74 -2.43 -18.35 16 3 C 0.13 3.78 5.41 86.38 0.47 4.24 16 4 C -0.12 -4.62 5.65 30.60 0.17 -4.44 16 5 C 0.16 7.03 6.26 86.38 0.54 7.57 16 6 N -0.75 -42.57 5.60 -343.44 -1.92 -44.49 16 7 C -0.25 -15.14 9.99 84.03 0.84 -14.30 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 10 N -0.97 -63.26 13.06 21.65 0.28 -62.98 16 11 Si 0.98 48.29 29.55 68.60 2.03 50.32 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 15 C 0.53 16.18 5.30 87.66 0.46 16.65 16 16 O -0.58 -23.86 15.52 -3.03 -0.05 -23.91 16 17 C -0.07 -1.47 0.28 -53.15 -0.02 -1.49 16 18 C -0.11 -2.10 3.67 -19.82 -0.07 -2.17 16 19 C -0.08 -0.83 8.04 22.26 0.18 -0.65 16 20 C -0.12 -1.02 10.05 22.27 0.22 -0.79 16 21 C -0.09 -1.21 10.04 22.26 0.22 -0.98 16 22 C -0.17 -3.73 10.03 22.31 0.22 -3.51 16 23 C 0.06 1.66 7.07 22.38 0.16 1.82 16 24 F -0.16 -6.10 15.97 44.97 0.72 -5.38 16 25 C -0.12 -2.61 7.09 31.12 0.22 -2.39 16 26 C -0.13 -2.06 7.80 31.12 0.24 -1.82 16 27 C -0.11 -1.20 5.29 31.12 0.16 -1.03 16 28 H 0.05 0.87 8.01 -2.39 -0.02 0.85 16 29 H 0.10 1.16 7.84 -2.39 -0.02 1.14 16 30 H 0.10 1.03 3.85 -2.38 -0.01 1.02 16 31 H 0.07 2.18 7.51 -2.39 -0.02 2.17 16 32 H 0.11 2.54 7.86 -2.39 -0.02 2.52 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.37 22.52 7.67 -92.70 -0.71 21.81 16 38 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.17 0.42 5.91 -2.91 -0.02 0.40 16 40 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.05 1.37 7.34 -2.39 -0.02 1.35 16 44 H 0.11 1.82 8.10 -2.38 -0.02 1.80 16 45 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.14 0.50 6.26 -2.39 -0.01 0.49 16 48 H 0.09 0.85 6.82 -2.39 -0.02 0.84 16 Total: -1.00 -86.98 386.66 4.53 -82.45 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.26 Total: 27.79 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.65 Total: -5.45 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -4.07 Total: -125.82 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.72 Total: -5.38 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -86.98 4.53 -82.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498637040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.127 kcal (2) G-P(sol) polarization free energy of solvation -86.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds