Wall clock time and date at job start Tue Mar 31 2020 18:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47133 * 2 1 4 4 C 1.42897 * 113.99928 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47348 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47482 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47445 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99791 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00218 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00237 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46944 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.49704 * 304.93027 * 11 10 9 13 13 C 1.53185 * 109.49740 * 65.00132 * 11 10 9 14 14 N 1.46925 * 108.77643 * 174.58379 * 13 11 10 15 15 C 1.36932 * 120.63287 * 126.36919 * 14 13 11 16 16 H 1.07999 * 120.00262 * 331.83461 * 15 14 13 17 17 C 1.38821 * 120.00060 * 151.83553 * 15 14 13 18 18 N 1.31612 * 119.99909 * 343.07810 * 17 15 14 19 19 Si 1.86801 * 119.99965 * 163.07908 * 17 15 14 20 20 H 1.48503 * 109.46882 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46915 * 119.99822 * 19 17 15 22 22 H 1.48493 * 109.47228 * 239.99825 * 19 17 15 23 23 C 1.46929 * 118.73765 * 306.38947 * 14 13 11 24 24 C 1.53194 * 108.77538 * 53.60808 * 23 14 13 25 25 C 1.53040 * 109.31137 * 305.36505 * 24 23 14 26 26 F 1.39901 * 109.46327 * 301.34320 * 25 24 23 27 27 F 1.39901 * 109.45859 * 181.38314 * 25 24 23 28 28 H 1.08994 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47257 * 300.00072 * 1 2 3 30 30 H 1.09003 * 109.46991 * 59.99978 * 1 2 3 31 31 H 1.09004 * 109.46593 * 240.00283 * 2 1 3 32 32 H 1.08998 * 109.46681 * 120.00678 * 2 1 3 33 33 H 1.08999 * 109.47039 * 60.00168 * 4 3 2 34 34 H 1.08999 * 109.47265 * 300.00307 * 4 3 2 35 35 H 1.08999 * 109.47127 * 59.99960 * 5 4 3 36 36 H 1.09008 * 109.47185 * 300.00193 * 5 4 3 37 37 H 1.09010 * 109.46885 * 60.00275 * 6 5 4 38 38 H 1.08997 * 109.47289 * 300.00566 * 6 5 4 39 39 H 0.97001 * 120.00068 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.46791 * 59.99649 * 10 9 7 41 41 H 1.08999 * 109.46918 * 299.99565 * 10 9 7 42 42 H 1.08999 * 109.58758 * 294.36655 * 13 11 10 43 43 H 1.09005 * 109.59148 * 54.79282 * 13 11 10 44 44 H 0.96999 * 120.00366 * 180.02562 * 18 17 15 45 45 H 1.09004 * 109.58836 * 173.39728 * 23 14 13 46 46 H 1.09005 * 109.59000 * 293.82196 * 23 14 13 47 47 H 1.08998 * 109.49630 * 65.31264 * 24 23 14 48 48 H 1.08999 * 109.49982 * 185.41143 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9383 0.0012 6 6 5.3507 3.0591 0.0012 7 6 5.7393 4.5151 0.0011 8 8 4.8809 5.3719 0.0016 9 7 7.0407 4.8652 0.0006 10 6 7.4186 6.2808 0.0011 11 6 8.9438 6.4014 0.0009 12 1 9.3530 5.8433 0.8430 13 6 9.5015 5.8340 -1.3081 14 7 10.9502 6.0749 -1.3488 15 6 11.8234 5.0428 -1.5663 16 1 11.5583 4.0392 -1.2680 17 6 13.0494 5.2863 -2.1701 18 7 13.2475 6.4088 -2.8281 19 14 14.4181 4.0208 -2.0487 20 1 13.9450 2.8540 -1.2614 21 1 14.8019 3.5746 -3.4121 22 1 15.5952 4.6276 -1.3769 23 6 11.4444 7.4445 -1.1513 24 6 10.8649 7.9940 0.1561 25 6 9.3395 7.8748 0.1231 26 9 8.8402 8.5841 -0.9745 27 9 8.8051 8.4047 1.3024 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9766 0.8908 35 1 3.4224 3.4216 0.8911 36 1 3.4230 3.4222 -0.8889 37 1 5.7534 2.5759 -0.8892 38 1 5.7535 2.5751 0.8908 39 1 7.7273 4.1800 0.0006 40 1 7.0163 6.7638 0.8915 41 1 7.0154 6.7647 -0.8885 42 1 9.3080 4.7622 -1.3535 43 1 9.0247 6.3296 -2.1538 44 1 14.1040 6.5789 -3.2503 45 1 12.5329 7.4354 -1.0932 46 1 11.1261 8.0716 -1.9841 47 1 11.2565 7.4211 0.9967 48 1 11.1457 9.0413 0.2666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500606769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:29 Heat of formation + Delta-G solvation = -184.167262 kcal Electronic energy + Delta-G solvation = -29387.403563 eV Core-core repulsion = 24919.993213 eV Total energy + Delta-G solvation = -4467.410350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.54057 -46.49217 -39.79705 -38.36152 -37.40479 -35.06523 -34.03626 -32.72271 -31.44136 -30.81727 -30.23798 -27.38544 -25.43353 -25.03663 -23.12267 -22.62015 -22.02860 -21.32182 -20.33389 -19.55349 -17.63888 -17.02545 -16.82824 -16.75967 -16.65048 -16.16452 -15.78207 -15.49705 -15.22374 -15.05088 -14.63139 -14.57730 -14.06027 -13.69161 -13.47607 -13.26744 -13.22673 -13.08820 -12.99131 -12.80726 -12.62064 -12.26575 -12.08574 -11.86309 -11.83809 -11.70133 -11.60053 -11.54335 -11.26885 -11.22204 -11.05211 -10.87547 -10.65306 -10.54157 -10.11297 -9.97642 -9.91651 -9.89746 -9.64402 -9.01765 -8.65305 -6.93115 -5.97281 -3.42313 2.65278 2.99658 3.26477 3.34727 3.36412 3.47814 4.19497 4.33921 4.54680 4.63062 4.66310 4.67158 4.73374 4.74930 4.88158 4.93393 5.01257 5.09199 5.12852 5.17396 5.22999 5.25063 5.31784 5.39499 5.43331 5.53607 5.54438 5.63262 5.75589 5.88012 5.91007 5.99654 6.05821 6.13237 6.24206 6.29835 6.40563 6.41909 6.66551 6.91626 7.07302 7.41957 7.50280 7.61864 8.23195 8.23320 8.99240 9.61745 10.17338 11.11843 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.002402 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.055334 B =11652.449999 C =13505.350074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.063 3.937 5 C -0.103 4.103 6 C -0.138 4.138 7 C 0.512 3.488 8 O -0.542 6.542 9 N -0.724 5.724 10 C 0.125 3.875 11 C -0.155 4.155 12 H 0.101 0.899 13 C 0.153 3.847 14 N -0.590 5.590 15 C -0.261 4.261 16 H 0.069 0.931 17 C 0.006 3.994 18 N -0.898 5.898 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.170 3.830 24 C -0.179 4.179 25 C 0.300 3.700 26 F -0.199 7.199 27 F -0.213 7.213 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.404 0.596 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.033 0.967 44 H 0.256 0.744 45 H 0.100 0.900 46 H 0.032 0.968 47 H 0.086 0.914 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.981 -9.248 7.117 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.014 4.014 5 C -0.141 4.141 6 C -0.178 4.178 7 C 0.299 3.701 8 O -0.419 6.419 9 N -0.376 5.376 10 C 0.000 4.000 11 C -0.176 4.176 12 H 0.120 0.880 13 C 0.026 3.974 14 N -0.312 5.312 15 C -0.390 4.390 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.541 5.541 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.214 1.214 23 C 0.044 3.956 24 C -0.219 4.219 25 C 0.263 3.737 26 F -0.180 7.180 27 F -0.195 7.195 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.239 0.761 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.118 0.882 46 H 0.051 0.949 47 H 0.104 0.896 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.576 -8.394 7.004 19.030 hybrid contribution 1.278 -0.975 0.062 1.609 sum -14.299 -9.369 7.066 18.498 Atomic orbital electron populations 1.21748 0.93769 1.02184 1.03241 1.22456 0.95641 0.83870 1.00022 1.87897 1.21224 1.26332 1.95426 1.22509 0.81248 0.97468 1.00181 1.21208 0.93365 0.94535 1.05004 1.21546 0.97510 0.93958 1.04819 1.20550 0.82304 0.91293 0.75982 1.90718 1.49456 1.52334 1.49357 1.45978 1.07506 1.08707 1.75407 1.21316 0.93706 0.81951 1.02985 1.22966 0.95114 0.94518 1.05044 0.88036 1.20913 0.86520 0.98631 0.91359 1.44097 0.99259 1.05009 1.82850 1.19178 0.96886 0.89167 1.33812 0.91287 1.25106 0.99935 0.97516 0.96779 1.70021 1.23853 1.25563 1.34713 0.86194 0.82108 0.80779 0.77463 1.20168 1.21591 1.21415 1.20842 1.00655 0.84522 0.89571 1.23275 0.90350 1.03059 1.05206 1.21031 0.93560 0.88175 0.70897 1.92968 1.89404 1.80807 1.54836 1.92957 1.88603 1.88541 1.49357 0.91149 0.91826 0.91795 0.93414 0.93465 0.93182 0.93287 0.90322 0.90230 0.88459 0.88649 0.76118 0.91104 0.90712 0.91607 0.94951 0.93345 0.88155 0.94944 0.89578 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.39 -4.04 10.34 -35.23 -0.36 -4.40 16 4 C 0.06 0.53 5.94 37.16 0.22 0.75 16 5 C -0.10 -1.03 4.87 -26.73 -0.13 -1.16 16 6 C -0.14 -1.21 5.70 -27.88 -0.16 -1.37 16 7 C 0.51 6.65 7.83 -10.99 -0.09 6.56 16 8 O -0.54 -9.28 15.98 5.56 0.09 -9.19 16 9 N -0.72 -9.00 5.33 -60.29 -0.32 -9.32 16 10 C 0.12 1.86 4.83 -4.04 -0.02 1.84 16 11 C -0.15 -2.48 2.03 -90.50 -0.18 -2.67 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 C 0.15 2.87 5.40 -3.71 -0.02 2.85 16 14 N -0.59 -13.44 2.99 -172.31 -0.52 -13.95 16 15 C -0.26 -6.51 9.58 -15.06 -0.14 -6.66 16 16 H 0.07 1.66 7.88 -52.49 -0.41 1.24 16 17 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 18 N -0.90 -24.54 11.20 55.49 0.62 -23.92 16 19 Si 0.91 20.23 29.59 -169.99 -5.03 15.20 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.17 3.78 5.10 -3.71 -0.02 3.76 16 24 C -0.18 -3.24 5.62 -26.61 -0.15 -3.39 16 25 C 0.30 5.27 1.63 -26.69 -0.04 5.23 16 26 F -0.20 -3.82 15.73 2.25 0.04 -3.78 16 27 F -0.21 -3.68 16.41 2.25 0.04 -3.64 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.08 0.92 8.10 -51.92 -0.42 0.50 16 37 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.40 4.15 7.70 -40.82 -0.31 3.83 16 40 H 0.07 1.10 7.63 -51.93 -0.40 0.71 16 41 H 0.07 1.23 7.97 -51.93 -0.41 0.82 16 42 H 0.07 1.13 7.13 -51.93 -0.37 0.76 16 43 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 44 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 45 H 0.10 2.47 6.06 -51.93 -0.31 2.15 16 46 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 47 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 48 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -30.67 391.71 -7.83 -38.51 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.10 Total: 2.70 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.19 Total: 5.90 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.22 Total: -47.19 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.28 Total: -13.59 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.07 Total: -7.43 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.67 -7.83 -38.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500606769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.662 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds