Wall clock time and date at job start Tue Mar 31 2020 18:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47133 * 2 1 4 4 C 1.42897 * 113.99928 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47348 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47482 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47445 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99791 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00218 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00237 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46944 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.49704 * 304.93027 * 11 10 9 13 13 C 1.53185 * 109.49740 * 65.00132 * 11 10 9 14 14 N 1.46925 * 108.77643 * 174.58379 * 13 11 10 15 15 C 1.36932 * 120.63287 * 126.36919 * 14 13 11 16 16 H 1.07999 * 120.00262 * 331.83461 * 15 14 13 17 17 C 1.38821 * 120.00060 * 151.83553 * 15 14 13 18 18 N 1.31612 * 119.99909 * 343.07810 * 17 15 14 19 19 Si 1.86801 * 119.99965 * 163.07908 * 17 15 14 20 20 H 1.48503 * 109.46882 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46915 * 119.99822 * 19 17 15 22 22 H 1.48493 * 109.47228 * 239.99825 * 19 17 15 23 23 C 1.46929 * 118.73765 * 306.38947 * 14 13 11 24 24 C 1.53194 * 108.77538 * 53.60808 * 23 14 13 25 25 C 1.53040 * 109.31137 * 305.36505 * 24 23 14 26 26 F 1.39901 * 109.46327 * 301.34320 * 25 24 23 27 27 F 1.39901 * 109.45859 * 181.38314 * 25 24 23 28 28 H 1.08994 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47257 * 300.00072 * 1 2 3 30 30 H 1.09003 * 109.46991 * 59.99978 * 1 2 3 31 31 H 1.09004 * 109.46593 * 240.00283 * 2 1 3 32 32 H 1.08998 * 109.46681 * 120.00678 * 2 1 3 33 33 H 1.08999 * 109.47039 * 60.00168 * 4 3 2 34 34 H 1.08999 * 109.47265 * 300.00307 * 4 3 2 35 35 H 1.08999 * 109.47127 * 59.99960 * 5 4 3 36 36 H 1.09008 * 109.47185 * 300.00193 * 5 4 3 37 37 H 1.09010 * 109.46885 * 60.00275 * 6 5 4 38 38 H 1.08997 * 109.47289 * 300.00566 * 6 5 4 39 39 H 0.97001 * 120.00068 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.46791 * 59.99649 * 10 9 7 41 41 H 1.08999 * 109.46918 * 299.99565 * 10 9 7 42 42 H 1.08999 * 109.58758 * 294.36655 * 13 11 10 43 43 H 1.09005 * 109.59148 * 54.79282 * 13 11 10 44 44 H 0.96999 * 120.00366 * 180.02562 * 18 17 15 45 45 H 1.09004 * 109.58836 * 173.39728 * 23 14 13 46 46 H 1.09005 * 109.59000 * 293.82196 * 23 14 13 47 47 H 1.08998 * 109.49630 * 65.31264 * 24 23 14 48 48 H 1.08999 * 109.49982 * 185.41143 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9383 0.0012 6 6 5.3507 3.0591 0.0012 7 6 5.7393 4.5151 0.0011 8 8 4.8809 5.3719 0.0016 9 7 7.0407 4.8652 0.0006 10 6 7.4186 6.2808 0.0011 11 6 8.9438 6.4014 0.0009 12 1 9.3530 5.8433 0.8430 13 6 9.5015 5.8340 -1.3081 14 7 10.9502 6.0749 -1.3488 15 6 11.8234 5.0428 -1.5663 16 1 11.5583 4.0392 -1.2680 17 6 13.0494 5.2863 -2.1701 18 7 13.2475 6.4088 -2.8281 19 14 14.4181 4.0208 -2.0487 20 1 13.9450 2.8540 -1.2614 21 1 14.8019 3.5746 -3.4121 22 1 15.5952 4.6276 -1.3769 23 6 11.4444 7.4445 -1.1513 24 6 10.8649 7.9940 0.1561 25 6 9.3395 7.8748 0.1231 26 9 8.8402 8.5841 -0.9745 27 9 8.8051 8.4047 1.3024 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9766 0.8908 35 1 3.4224 3.4216 0.8911 36 1 3.4230 3.4222 -0.8889 37 1 5.7534 2.5759 -0.8892 38 1 5.7535 2.5751 0.8908 39 1 7.7273 4.1800 0.0006 40 1 7.0163 6.7638 0.8915 41 1 7.0154 6.7647 -0.8885 42 1 9.3080 4.7622 -1.3535 43 1 9.0247 6.3296 -2.1538 44 1 14.1040 6.5789 -3.2503 45 1 12.5329 7.4354 -1.0932 46 1 11.1261 8.0716 -1.9841 47 1 11.2565 7.4211 0.9967 48 1 11.1457 9.0413 0.2666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500606769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:28 Heat of formation + Delta-G solvation = -203.235969 kcal Electronic energy + Delta-G solvation = -29388.230445 eV Core-core repulsion = 24919.993213 eV Total energy + Delta-G solvation = -4468.237231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.99710 -47.95520 -40.87063 -39.10626 -38.87272 -36.41229 -34.82368 -34.36207 -32.45744 -32.02983 -31.74402 -28.33560 -27.10616 -26.36583 -24.09928 -23.65997 -23.26178 -22.51050 -21.42846 -21.00247 -19.02941 -18.36348 -18.21762 -17.70412 -17.43964 -17.26584 -16.99396 -16.93078 -16.57514 -16.38054 -15.90726 -15.46086 -15.30881 -15.12688 -14.84465 -14.68906 -14.38789 -14.33493 -14.26728 -13.82347 -13.60282 -13.51480 -13.25599 -13.17301 -13.05701 -13.00137 -12.75155 -12.59963 -12.48516 -12.40204 -12.25030 -12.15124 -11.90264 -11.86474 -11.74521 -11.62450 -11.35049 -10.90816 -10.57596 -10.51020 -10.14631 -8.79768 -7.90034 -5.37069 1.50560 1.53919 1.62965 1.64635 2.03067 2.50247 2.74664 2.86642 3.17231 3.24043 3.30747 3.52396 3.58845 3.75486 3.91799 4.01861 4.07845 4.13222 4.19222 4.25639 4.34085 4.46125 4.49442 4.51293 4.55380 4.56105 4.57016 4.67612 4.73702 4.77640 4.86015 4.89094 4.90187 5.03374 5.10445 5.15340 5.23860 5.28509 5.30037 5.38631 5.59163 5.67600 6.33137 6.34669 6.53485 7.08974 7.24528 7.76820 8.29899 9.18313 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.002402 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.055334 B =11652.449999 C =13505.350074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.420 6.420 4 C 0.064 3.936 5 C -0.100 4.100 6 C -0.127 4.127 7 C 0.509 3.491 8 O -0.590 6.590 9 N -0.714 5.714 10 C 0.135 3.865 11 C -0.137 4.137 12 H 0.121 0.879 13 C 0.154 3.846 14 N -0.605 5.605 15 C -0.260 4.260 16 H 0.083 0.917 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.259 1.259 21 H -0.298 1.298 22 H -0.294 1.294 23 C 0.178 3.822 24 C -0.169 4.169 25 C 0.297 3.703 26 F -0.211 7.211 27 F -0.208 7.208 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.418 0.582 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.013 0.987 44 H 0.250 0.750 45 H 0.074 0.926 46 H 0.002 0.998 47 H 0.101 0.899 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.140 -11.915 8.628 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.341 6.341 4 C -0.012 4.012 5 C -0.139 4.139 6 C -0.166 4.166 7 C 0.297 3.703 8 O -0.470 6.470 9 N -0.367 5.367 10 C 0.010 3.990 11 C -0.158 4.158 12 H 0.139 0.861 13 C 0.028 3.972 14 N -0.328 5.328 15 C -0.390 4.390 16 H 0.101 0.899 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.183 1.183 21 H -0.226 1.226 22 H -0.221 1.221 23 C 0.051 3.949 24 C -0.208 4.208 25 C 0.261 3.739 26 F -0.193 7.193 27 F -0.189 7.189 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.256 0.744 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.031 0.969 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.021 0.979 47 H 0.119 0.881 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.746 -11.100 8.537 21.072 hybrid contribution 1.251 -0.114 -0.426 1.327 sum -14.495 -11.214 8.111 20.041 Atomic orbital electron populations 1.21786 0.93402 1.03324 1.02468 1.22654 0.96087 0.82814 1.01078 1.87863 1.22328 1.28204 1.95669 1.22545 0.80702 0.96210 1.01791 1.21141 0.94279 0.95585 1.02867 1.21562 0.96560 0.90931 1.07549 1.21338 0.81673 0.92767 0.74511 1.90706 1.50713 1.54081 1.51495 1.45877 1.07989 1.07880 1.74979 1.21039 0.92565 0.83516 1.01919 1.22770 0.95665 0.93380 1.04014 0.86071 1.20981 0.84203 0.99928 0.92057 1.44331 1.00772 1.04676 1.82978 1.19602 0.97017 0.90116 1.32234 0.89933 1.25856 1.02229 0.99247 0.97174 1.70178 1.23938 1.27614 1.36425 0.85200 0.79204 0.79127 0.76821 1.18298 1.22576 1.22079 1.20553 0.99219 0.84417 0.90671 1.23103 0.90652 1.03961 1.03114 1.21114 0.93141 0.88988 0.70693 1.92952 1.89514 1.81209 1.55578 1.92967 1.88445 1.88560 1.48896 0.89057 0.92521 0.92645 0.92411 0.92233 0.91671 0.91378 0.92323 0.92662 0.85880 0.85406 0.74443 0.91464 0.92647 0.89498 0.96866 0.94040 0.90802 0.97940 0.88086 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.05 0.65 6.66 71.98 0.48 1.13 16 3 O -0.42 -8.26 10.34 -148.98 -1.54 -9.80 16 4 C 0.06 0.94 5.94 71.98 0.43 1.37 16 5 C -0.10 -1.89 4.87 30.59 0.15 -1.75 16 6 C -0.13 -1.85 5.70 29.85 0.17 -1.68 16 7 C 0.51 12.36 7.83 87.66 0.69 13.05 16 8 O -0.59 -20.20 15.98 -3.03 -0.05 -20.25 16 9 N -0.71 -16.08 5.33 -463.06 -2.47 -18.55 16 10 C 0.13 3.84 4.83 86.38 0.42 4.26 16 11 C -0.14 -4.13 2.03 -10.72 -0.02 -4.15 16 12 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 13 C 0.15 5.57 5.40 86.36 0.47 6.04 16 14 N -0.61 -27.11 2.99 -699.08 -2.09 -29.21 16 15 C -0.26 -12.64 9.58 84.04 0.81 -11.83 16 16 H 0.08 3.73 7.88 -2.91 -0.02 3.71 16 17 C -0.05 -2.54 4.92 84.87 0.42 -2.12 16 18 N -0.94 -52.22 11.20 21.65 0.24 -51.98 16 19 Si 0.97 41.26 29.59 68.60 2.03 43.29 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.30 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 23 C 0.18 7.97 5.10 86.36 0.44 8.41 16 24 C -0.17 -5.91 5.62 30.67 0.17 -5.74 16 25 C 0.30 10.07 1.63 30.62 0.05 10.12 16 26 F -0.21 -8.10 15.73 44.97 0.71 -7.39 16 27 F -0.21 -6.76 16.41 44.97 0.74 -6.03 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.05 1.29 8.10 -2.38 -0.02 1.27 16 37 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.42 7.06 7.70 -92.71 -0.71 6.35 16 40 H 0.07 2.01 7.63 -2.39 -0.02 1.99 16 41 H 0.06 1.81 7.97 -2.39 -0.02 1.79 16 42 H 0.09 2.74 7.13 -2.39 -0.02 2.72 16 43 H 0.01 0.54 7.92 -2.38 -0.02 0.52 16 44 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 45 H 0.07 3.72 6.06 -2.38 -0.01 3.70 16 46 H 0.00 0.12 7.92 -2.38 -0.02 0.10 16 47 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -68.15 391.71 3.20 -64.94 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.24 Total: 18.90 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 5.40 Total: 16.06 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -4.32 Total: -99.73 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -1.59 Total: -30.05 kcal Atomic # 9 Polarization: -14.86 SS G_CDS: 1.45 Total: -13.42 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -68.15 3.20 -64.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500606769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.292 kcal (2) G-P(sol) polarization free energy of solvation -68.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds