Wall clock time and date at job start Tue Mar 31 2020 18:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 120.00241 * 2 1 4 4 H 1.08000 * 120.00091 * 202.70139 * 3 2 1 5 5 C 1.38809 * 120.00060 * 22.70699 * 3 2 1 6 6 N 1.31615 * 120.00333 * 11.51096 * 5 3 2 7 7 Si 1.86809 * 120.00032 * 191.51814 * 5 3 2 8 8 H 1.48500 * 109.46654 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47091 * 119.99493 * 7 5 3 10 10 H 1.48499 * 109.46760 * 239.99860 * 7 5 3 11 11 C 1.46497 * 119.99543 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47404 * 270.00191 * 11 2 1 13 13 O 1.42893 * 109.47283 * 65.00011 * 12 11 2 14 14 C 1.42902 * 114.00271 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47132 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.47359 * 65.00482 * 15 14 13 17 17 C 1.34772 * 120.00476 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99674 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00321 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47231 * 59.99676 * 19 17 16 21 21 C 1.52999 * 109.47281 * 180.02562 * 20 19 17 22 22 C 1.52999 * 109.46783 * 299.99982 * 21 20 19 23 23 F 1.39899 * 109.47317 * 299.99766 * 22 21 20 24 24 F 1.39907 * 109.46811 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.47044 * 60.00301 * 22 21 20 26 26 C 1.52997 * 109.47204 * 180.02562 * 19 17 16 27 27 H 1.09003 * 109.47151 * 273.91835 * 1 2 3 28 28 H 1.09007 * 109.46658 * 33.91394 * 1 2 3 29 29 H 1.08996 * 109.47182 * 153.91484 * 1 2 3 30 30 H 0.96998 * 120.00143 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.47260 * 150.00077 * 11 2 1 32 32 H 1.09000 * 109.47382 * 29.99869 * 11 2 1 33 33 H 1.09000 * 109.47123 * 304.99964 * 12 11 2 34 34 H 1.09001 * 109.47586 * 185.00024 * 12 11 2 35 35 H 1.09000 * 109.47017 * 60.00532 * 14 13 12 36 36 H 1.08994 * 109.46978 * 300.00454 * 14 13 12 37 37 H 1.09001 * 109.47493 * 305.00159 * 15 14 13 38 38 H 1.09005 * 109.47420 * 185.00101 * 15 14 13 39 39 H 0.97000 * 119.99698 * 359.97438 * 16 15 14 40 40 H 1.09004 * 109.47125 * 299.99611 * 19 17 16 41 41 H 1.09002 * 109.47575 * 300.00307 * 20 19 17 42 42 H 1.09004 * 109.47119 * 59.99931 * 20 19 17 43 43 H 1.09005 * 109.46839 * 180.02562 * 21 20 19 44 44 H 1.08994 * 109.47288 * 59.99819 * 21 20 19 45 45 H 1.09001 * 109.46768 * 179.97438 * 25 22 21 46 46 H 1.08994 * 109.47457 * 59.99899 * 25 22 21 47 47 H 1.09004 * 109.47027 * 299.99365 * 26 19 17 48 48 H 1.09001 * 109.47493 * 59.99793 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1670 1.2220 -0.3610 5 6 1.5364 2.3414 0.4640 6 7 0.3919 2.2654 1.1094 7 14 2.3354 4.0046 0.1723 8 1 3.6075 3.8190 -0.5711 9 1 1.4185 4.8619 -0.6210 10 1 2.6158 4.6547 1.4777 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 8 1.2060 -1.9927 2.0822 14 6 1.3322 -2.4150 3.4416 15 6 -0.0568 -2.6878 4.0220 16 7 -0.6660 -3.8199 3.3195 17 6 -1.8983 -4.2429 3.6642 18 8 -2.5029 -3.6865 4.5564 19 6 -2.5252 -5.4070 2.9412 20 6 -1.6467 -6.6477 3.1143 21 6 -2.2828 -7.8295 2.3797 22 6 -3.6717 -8.1029 2.9603 23 9 -3.5569 -8.4069 4.3210 24 9 -4.2536 -9.1833 2.2881 25 6 -4.5502 -6.8623 2.7870 26 6 -3.9142 -5.6799 3.5217 27 1 -0.3633 0.0702 1.0253 28 1 -0.3633 0.8529 -0.5734 29 1 -0.3633 -0.9229 -0.4519 30 1 -0.0368 3.0729 1.4334 31 1 3.1499 -1.1387 -0.5133 32 1 1.6083 -2.0286 -0.5129 33 1 2.9642 -0.9124 1.9820 34 1 3.0730 -2.6059 1.4450 35 1 1.8205 -1.6318 4.0215 36 1 1.9299 -3.3255 3.4851 37 1 -0.6825 -1.8039 3.8979 38 1 0.0324 -2.9237 5.0825 39 1 -0.1823 -4.2652 2.6063 40 1 -2.6150 -5.1705 1.8809 41 1 -0.6573 -6.4531 2.7005 42 1 -1.5569 -6.8842 4.1746 43 1 -1.6571 -8.7135 2.5035 44 1 -2.3723 -7.5928 1.3196 45 1 -5.5398 -7.0573 3.2002 46 1 -4.6397 -6.6255 1.7269 47 1 -3.8248 -5.9163 4.5821 48 1 -4.5398 -4.7959 3.3980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506975813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:08 Heat of formation + Delta-G solvation = -179.550663 kcal Electronic energy + Delta-G solvation = -29647.704451 eV Core-core repulsion = 25180.494291 eV Total energy + Delta-G solvation = -4467.210159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.26322 -47.25017 -40.19197 -37.84643 -37.18160 -35.45419 -34.46082 -31.69279 -31.43656 -30.90212 -29.23470 -27.76136 -25.72263 -24.07730 -23.56221 -23.02702 -22.18298 -20.92856 -20.36814 -20.02838 -17.78774 -17.27101 -17.17708 -16.88833 -16.58972 -16.25553 -16.08411 -15.24806 -15.12950 -14.72145 -14.47047 -14.23078 -14.13161 -13.81945 -13.79157 -13.55767 -13.38396 -13.27144 -13.17002 -12.87854 -12.68889 -12.37802 -12.19139 -12.10281 -11.92318 -11.64950 -11.54145 -11.41501 -11.08545 -10.93543 -10.87012 -10.77963 -10.52669 -10.52444 -10.08506 -9.91154 -9.84247 -9.76744 -9.05195 -9.01977 -8.50284 -6.68613 -5.66813 -3.13342 2.60891 3.12287 3.38378 3.40715 3.45406 3.47288 3.69234 3.95526 3.99320 4.13377 4.40495 4.49938 4.52863 4.64601 4.70174 4.83424 4.96672 5.11220 5.18518 5.25931 5.26456 5.34614 5.39181 5.43841 5.53765 5.55015 5.57789 5.64752 5.71828 5.77438 5.95352 5.98067 6.08324 6.17366 6.20501 6.44858 6.52567 6.74163 6.93021 7.49980 7.50328 7.75352 7.82208 7.96173 8.21749 8.44816 9.29319 9.92978 10.43252 11.37211 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.002157 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.179997 B =12977.365298 C =13050.362518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.902 5.902 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.153 3.847 12 C 0.042 3.958 13 O -0.367 6.367 14 C 0.050 3.950 15 C 0.124 3.876 16 N -0.718 5.718 17 C 0.518 3.482 18 O -0.541 6.541 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.156 4.156 22 C 0.286 3.714 23 F -0.199 7.199 24 F -0.204 7.204 25 C -0.158 4.158 26 C -0.099 4.099 27 H 0.032 0.968 28 H 0.037 0.963 29 H -0.008 1.008 30 H 0.250 0.750 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.403 0.597 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 -21.969 3.469 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.547 5.547 7 Si 0.732 3.268 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.025 3.975 12 C -0.037 4.037 13 O -0.286 6.286 14 C -0.027 4.027 15 C 0.000 4.000 16 N -0.369 5.369 17 C 0.303 3.697 18 O -0.418 6.418 19 C -0.134 4.134 20 C -0.148 4.148 21 C -0.194 4.194 22 C 0.250 3.750 23 F -0.180 7.180 24 F -0.185 7.185 25 C -0.196 4.196 26 C -0.137 4.137 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.011 0.989 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.237 0.763 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.100 0.900 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.167 -21.410 4.090 22.402 hybrid contribution 0.924 0.640 -0.123 1.131 sum -4.243 -20.770 3.967 21.567 Atomic orbital electron populations 1.20688 0.82176 0.94781 0.99325 1.43888 1.02131 1.00227 1.85629 1.19231 0.98162 0.85628 1.35654 0.91543 1.25039 0.97772 0.98408 0.98436 1.70101 1.18048 1.26772 1.39738 0.86236 0.78621 0.84609 0.77363 1.20418 1.21661 1.21832 1.20891 0.96406 0.88910 0.91329 1.23521 0.85043 0.96883 0.98256 1.88008 1.30494 1.87353 1.22706 1.22601 0.95567 0.98434 0.86121 1.21408 0.93569 0.89643 0.95364 1.45923 1.17606 1.34320 1.39074 1.20389 0.81235 0.84528 0.83520 1.90713 1.61997 1.57893 1.31224 1.21431 0.96327 0.93694 1.01921 1.21511 0.98883 0.92273 1.02180 1.22512 0.93792 1.00933 1.02167 1.21161 0.95039 0.84288 0.74516 1.93002 1.96942 1.94136 1.33892 1.93011 1.86260 1.58890 1.80320 1.22570 0.99732 0.93192 1.04136 1.21329 0.94227 0.97535 1.00625 0.94977 0.94423 0.98909 0.93919 0.92388 0.93882 0.93312 0.95752 0.92090 0.93856 0.90080 0.90568 0.76287 0.87716 0.89757 0.90191 0.89064 0.88298 0.89088 0.88519 0.90049 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.43 8.61 59.85 0.52 4.95 16 2 N -0.60 -14.98 2.89 -181.12 -0.52 -15.50 16 3 C -0.26 -7.02 9.67 -15.06 -0.15 -7.17 16 4 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 5 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 6 N -0.90 -26.55 10.62 55.49 0.59 -25.96 16 7 Si 0.90 21.85 29.57 -169.99 -5.03 16.82 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 C 0.15 3.04 6.11 -4.04 -0.02 3.01 16 12 C 0.04 0.76 6.28 37.16 0.23 0.99 16 13 O -0.37 -6.56 9.84 -35.23 -0.35 -6.91 16 14 C 0.05 0.70 6.07 37.16 0.23 0.92 16 15 C 0.12 1.68 6.06 -4.04 -0.02 1.66 16 16 N -0.72 -8.45 5.40 -60.29 -0.33 -8.78 16 17 C 0.52 6.45 7.15 -10.99 -0.08 6.37 16 18 O -0.54 -8.93 15.98 5.56 0.09 -8.84 16 19 C -0.11 -0.96 2.52 -91.78 -0.23 -1.19 16 20 C -0.11 -0.75 4.98 -26.73 -0.13 -0.88 16 21 C -0.16 -0.95 5.45 -26.73 -0.15 -1.10 16 22 C 0.29 2.33 2.10 -26.73 -0.06 2.27 16 23 F -0.20 -2.02 16.03 2.25 0.04 -1.99 16 24 F -0.20 -1.94 17.06 2.25 0.04 -1.90 16 25 C -0.16 -1.12 5.45 -26.71 -0.15 -1.27 16 26 C -0.10 -0.88 4.38 -26.71 -0.12 -0.99 16 27 H 0.03 0.89 7.43 -51.93 -0.39 0.51 16 28 H 0.04 1.02 7.20 -51.93 -0.37 0.65 16 29 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.06 1.08 8.03 -51.93 -0.42 0.67 16 32 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.40 3.92 7.89 -40.82 -0.32 3.60 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.45 7.56 -51.93 -0.39 0.06 16 42 H 0.08 0.62 7.80 -51.93 -0.41 0.22 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.83 7.76 -51.93 -0.40 0.43 16 48 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 391.88 15.07 5.91 5.91 Total: -1.00 -33.51 391.88 -7.91 -41.43 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.13 Total: -1.81 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.22 Total: 7.53 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.26 Total: -50.24 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.26 Total: -15.75 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.07 Total: -3.89 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.51 -7.91 -41.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506975813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.125 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds