Wall clock time and date at job start Tue Mar 31 2020 18:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 120.00241 * 2 1 4 4 H 1.08000 * 120.00091 * 202.70139 * 3 2 1 5 5 C 1.38809 * 120.00060 * 22.70699 * 3 2 1 6 6 N 1.31615 * 120.00333 * 11.51096 * 5 3 2 7 7 Si 1.86809 * 120.00032 * 191.51814 * 5 3 2 8 8 H 1.48500 * 109.46654 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47091 * 119.99493 * 7 5 3 10 10 H 1.48499 * 109.46760 * 239.99860 * 7 5 3 11 11 C 1.46497 * 119.99543 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47404 * 270.00191 * 11 2 1 13 13 O 1.42893 * 109.47283 * 65.00011 * 12 11 2 14 14 C 1.42902 * 114.00271 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47132 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.47359 * 65.00482 * 15 14 13 17 17 C 1.34772 * 120.00476 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99674 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00321 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47231 * 59.99676 * 19 17 16 21 21 C 1.52999 * 109.47281 * 180.02562 * 20 19 17 22 22 C 1.52999 * 109.46783 * 299.99982 * 21 20 19 23 23 F 1.39899 * 109.47317 * 299.99766 * 22 21 20 24 24 F 1.39907 * 109.46811 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.47044 * 60.00301 * 22 21 20 26 26 C 1.52997 * 109.47204 * 180.02562 * 19 17 16 27 27 H 1.09003 * 109.47151 * 273.91835 * 1 2 3 28 28 H 1.09007 * 109.46658 * 33.91394 * 1 2 3 29 29 H 1.08996 * 109.47182 * 153.91484 * 1 2 3 30 30 H 0.96998 * 120.00143 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.47260 * 150.00077 * 11 2 1 32 32 H 1.09000 * 109.47382 * 29.99869 * 11 2 1 33 33 H 1.09000 * 109.47123 * 304.99964 * 12 11 2 34 34 H 1.09001 * 109.47586 * 185.00024 * 12 11 2 35 35 H 1.09000 * 109.47017 * 60.00532 * 14 13 12 36 36 H 1.08994 * 109.46978 * 300.00454 * 14 13 12 37 37 H 1.09001 * 109.47493 * 305.00159 * 15 14 13 38 38 H 1.09005 * 109.47420 * 185.00101 * 15 14 13 39 39 H 0.97000 * 119.99698 * 359.97438 * 16 15 14 40 40 H 1.09004 * 109.47125 * 299.99611 * 19 17 16 41 41 H 1.09002 * 109.47575 * 300.00307 * 20 19 17 42 42 H 1.09004 * 109.47119 * 59.99931 * 20 19 17 43 43 H 1.09005 * 109.46839 * 180.02562 * 21 20 19 44 44 H 1.08994 * 109.47288 * 59.99819 * 21 20 19 45 45 H 1.09001 * 109.46768 * 179.97438 * 25 22 21 46 46 H 1.08994 * 109.47457 * 59.99899 * 25 22 21 47 47 H 1.09004 * 109.47027 * 299.99365 * 26 19 17 48 48 H 1.09001 * 109.47493 * 59.99793 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1670 1.2220 -0.3610 5 6 1.5364 2.3414 0.4640 6 7 0.3919 2.2654 1.1094 7 14 2.3354 4.0046 0.1723 8 1 3.6075 3.8190 -0.5711 9 1 1.4185 4.8619 -0.6210 10 1 2.6158 4.6547 1.4777 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 8 1.2060 -1.9927 2.0822 14 6 1.3322 -2.4150 3.4416 15 6 -0.0568 -2.6878 4.0220 16 7 -0.6660 -3.8199 3.3195 17 6 -1.8983 -4.2429 3.6642 18 8 -2.5029 -3.6865 4.5564 19 6 -2.5252 -5.4070 2.9412 20 6 -1.6467 -6.6477 3.1143 21 6 -2.2828 -7.8295 2.3797 22 6 -3.6717 -8.1029 2.9603 23 9 -3.5569 -8.4069 4.3210 24 9 -4.2536 -9.1833 2.2881 25 6 -4.5502 -6.8623 2.7870 26 6 -3.9142 -5.6799 3.5217 27 1 -0.3633 0.0702 1.0253 28 1 -0.3633 0.8529 -0.5734 29 1 -0.3633 -0.9229 -0.4519 30 1 -0.0368 3.0729 1.4334 31 1 3.1499 -1.1387 -0.5133 32 1 1.6083 -2.0286 -0.5129 33 1 2.9642 -0.9124 1.9820 34 1 3.0730 -2.6059 1.4450 35 1 1.8205 -1.6318 4.0215 36 1 1.9299 -3.3255 3.4851 37 1 -0.6825 -1.8039 3.8979 38 1 0.0324 -2.9237 5.0825 39 1 -0.1823 -4.2652 2.6063 40 1 -2.6150 -5.1705 1.8809 41 1 -0.6573 -6.4531 2.7005 42 1 -1.5569 -6.8842 4.1746 43 1 -1.6571 -8.7135 2.5035 44 1 -2.3723 -7.5928 1.3196 45 1 -5.5398 -7.0573 3.2002 46 1 -4.6397 -6.6255 1.7269 47 1 -3.8248 -5.9163 4.5821 48 1 -4.5398 -4.7959 3.3980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506975813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:07 Heat of formation + Delta-G solvation = -201.309259 kcal Electronic energy + Delta-G solvation = -29648.647974 eV Core-core repulsion = 25180.494291 eV Total energy + Delta-G solvation = -4468.153683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.94019 -47.94520 -41.13921 -39.10186 -38.03508 -37.17640 -35.70515 -33.40989 -32.21199 -31.75451 -30.49828 -29.18605 -27.80059 -24.97885 -24.71787 -24.14577 -23.19197 -22.11802 -21.74142 -20.81625 -18.76171 -18.48033 -18.13427 -17.87744 -17.60563 -17.29696 -17.18494 -16.86339 -16.22781 -16.11157 -15.52414 -15.25631 -15.19278 -15.08209 -14.87654 -14.69411 -14.46655 -14.28930 -14.04003 -13.92867 -13.75877 -13.40149 -13.19736 -13.09926 -13.01901 -12.78400 -12.73228 -12.63358 -12.50065 -12.43300 -12.31134 -12.19648 -11.97650 -11.77111 -11.72214 -11.64800 -11.11892 -10.82175 -10.61701 -10.35459 -10.08998 -8.71548 -7.77201 -5.25025 1.46235 1.47683 1.57620 1.63668 2.19158 2.53175 2.82499 2.88472 3.13093 3.32063 3.36139 3.42756 3.75137 3.79363 3.86304 3.91880 4.04176 4.08142 4.19844 4.31474 4.33642 4.47545 4.56009 4.61514 4.63006 4.64430 4.68295 4.71341 4.82091 4.88600 4.90977 4.96525 4.97534 5.00288 5.03902 5.15453 5.24001 5.27325 5.39828 5.44542 5.67930 5.85449 6.36942 6.48436 6.57858 7.20393 7.26865 7.94465 8.39216 9.25784 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.002157 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.179997 B =12977.365298 C =13050.362518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.614 5.614 3 C -0.258 4.258 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.937 5.937 7 Si 0.965 3.035 8 H -0.263 1.263 9 H -0.295 1.295 10 H -0.296 1.296 11 C 0.145 3.855 12 C 0.051 3.949 13 O -0.392 6.392 14 C 0.054 3.946 15 C 0.129 3.871 16 N -0.708 5.708 17 C 0.513 3.487 18 O -0.590 6.590 19 C -0.104 4.104 20 C -0.105 4.105 21 C -0.150 4.150 22 C 0.276 3.724 23 F -0.215 7.215 24 F -0.212 7.212 25 C -0.152 4.152 26 C -0.097 4.097 27 H -0.002 1.002 28 H 0.007 0.993 29 H 0.022 0.978 30 H 0.243 0.757 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.088 0.912 39 H 0.416 0.584 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.090 0.910 46 H 0.119 0.881 47 H 0.060 0.940 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.680 -23.986 1.859 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.337 5.337 3 C -0.388 4.388 4 H 0.092 0.908 5 C -0.253 4.253 6 N -0.584 5.584 7 Si 0.794 3.206 8 H -0.187 1.187 9 H -0.222 1.222 10 H -0.224 1.224 11 C 0.019 3.981 12 C -0.027 4.027 13 O -0.311 6.311 14 C -0.023 4.023 15 C 0.005 3.995 16 N -0.360 5.360 17 C 0.300 3.700 18 O -0.470 6.470 19 C -0.125 4.125 20 C -0.143 4.143 21 C -0.187 4.187 22 C 0.240 3.760 23 F -0.196 7.196 24 F -0.193 7.193 25 C -0.190 4.190 26 C -0.135 4.135 27 H 0.017 0.983 28 H 0.026 0.974 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.253 0.747 40 H 0.146 0.854 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.140 0.860 45 H 0.109 0.891 46 H 0.137 0.863 47 H 0.078 0.922 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.356 -23.481 2.447 23.846 hybrid contribution 0.380 1.181 0.386 1.299 sum -2.976 -22.301 2.833 22.676 Atomic orbital electron populations 1.20319 0.82924 0.94785 0.96959 1.44119 1.02087 1.01664 1.85813 1.19607 0.98340 0.86697 1.34155 0.90759 1.25806 0.98574 1.01844 0.99043 1.70287 1.19668 1.26969 1.41481 0.85228 0.78167 0.80372 0.76839 1.18689 1.22183 1.22352 1.21154 0.96799 0.87062 0.93111 1.23256 0.85361 0.97957 0.96159 1.87961 1.30887 1.87767 1.24533 1.22689 0.95837 0.99663 0.84082 1.21225 0.93001 0.88900 0.96379 1.45842 1.17575 1.33493 1.39094 1.21135 0.80957 0.84955 0.82931 1.90694 1.63154 1.59655 1.33504 1.21458 0.95912 0.92802 1.02354 1.21495 0.99578 0.91421 1.01762 1.22533 0.92266 1.00865 1.03080 1.21535 0.96532 0.84096 0.73796 1.92973 1.97068 1.94265 1.35321 1.92993 1.86566 1.59355 1.80371 1.22542 0.99365 0.91931 1.05170 1.21251 0.94672 0.97823 0.99779 0.98336 0.97442 0.95962 0.94749 0.91009 0.91794 0.96298 0.91023 0.93121 0.89905 0.94192 0.89424 0.74678 0.85359 0.87485 0.91600 0.88071 0.85992 0.89093 0.86297 0.92168 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 9.96 8.61 127.77 1.10 11.06 16 2 N -0.61 -30.32 2.89 -726.93 -2.10 -32.42 16 3 C -0.26 -13.94 9.67 84.03 0.81 -13.13 16 4 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 5 C -0.06 -3.27 5.12 84.86 0.43 -2.84 16 6 N -0.94 -56.74 10.62 21.65 0.23 -56.51 16 7 Si 0.96 45.31 29.57 68.60 2.03 47.33 16 8 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 11 C 0.14 5.36 6.11 86.38 0.53 5.89 16 12 C 0.05 1.70 6.28 71.98 0.45 2.15 16 13 O -0.39 -13.35 9.84 -148.98 -1.47 -14.81 16 14 C 0.05 1.41 6.07 71.98 0.44 1.85 16 15 C 0.13 3.49 6.06 86.38 0.52 4.02 16 16 N -0.71 -15.70 5.40 -463.06 -2.50 -18.20 16 17 C 0.51 12.52 7.15 87.66 0.63 13.15 16 18 O -0.59 -20.15 15.98 -3.03 -0.05 -20.20 16 19 C -0.10 -1.61 2.52 -11.54 -0.03 -1.63 16 20 C -0.10 -1.14 4.98 30.59 0.15 -0.99 16 21 C -0.15 -1.37 5.45 30.59 0.17 -1.20 16 22 C 0.28 4.03 2.10 30.59 0.06 4.10 16 23 F -0.21 -4.27 16.03 44.97 0.72 -3.55 16 24 F -0.21 -3.66 17.06 44.97 0.77 -2.90 16 25 C -0.15 -1.95 5.45 30.61 0.17 -1.78 16 26 C -0.10 -1.68 4.38 30.61 0.13 -1.55 16 27 H 0.00 -0.10 7.43 -2.39 -0.02 -0.12 16 28 H 0.01 0.38 7.20 -2.38 -0.02 0.37 16 29 H 0.02 0.97 7.85 -2.39 -0.02 0.95 16 30 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.07 2.45 8.03 -2.38 -0.02 2.43 16 32 H 0.06 2.10 7.87 -2.39 -0.02 2.08 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.42 6.85 7.89 -92.71 -0.73 6.12 16 40 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.11 0.71 7.56 -2.39 -0.02 0.69 16 42 H 0.07 0.93 7.80 -2.38 -0.02 0.91 16 43 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.29 7.76 -2.38 -0.02 1.27 16 48 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 Total: -1.00 -75.52 391.88 3.42 -72.10 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.22 Total: 10.06 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 5.57 Total: 19.10 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -4.37 Total: -107.13 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -1.52 Total: -35.02 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 1.49 Total: -6.45 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.52 3.42 -72.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506975813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.212 kcal (2) G-P(sol) polarization free energy of solvation -75.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds