Wall clock time and date at job start Tue Mar 31 2020 18:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99622 * 2 1 4 4 C 1.52994 * 109.47166 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47360 * 179.97438 * 4 3 2 6 6 C 1.36705 * 127.13898 * 270.05286 * 5 4 3 7 7 C 1.50696 * 126.34317 * 359.97321 * 6 5 4 8 8 C 1.52998 * 109.47608 * 270.02615 * 7 6 5 9 9 C 1.53001 * 109.47755 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47363 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99948 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00013 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00017 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00249 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46899 * 89.99638 * 14 12 10 16 16 H 1.48497 * 109.47348 * 209.99779 * 14 12 10 17 17 H 1.48492 * 109.46854 * 330.00166 * 14 12 10 18 18 N 1.30315 * 107.31666 * 179.97438 * 6 5 4 19 19 N 1.28534 * 110.05214 * 359.97438 * 18 6 5 20 20 C 1.31231 * 109.85509 * 0.02562 * 19 18 6 21 21 N 1.38646 * 126.47125 * 180.02562 * 20 19 18 22 22 C 1.40038 * 120.00048 * 359.96978 * 21 20 19 23 23 C 1.40430 * 125.98221 * 359.71718 * 22 21 20 24 24 C 1.35233 * 107.87266 * 179.88515 * 23 22 21 25 25 N 1.34976 * 107.86064 * 0.37411 * 24 23 22 26 26 C 1.46500 * 125.97038 * 179.74518 * 25 24 23 27 27 N 1.31242 * 125.97451 * 180.02562 * 22 21 20 28 28 H 1.09008 * 109.46729 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47258 * 300.00161 * 1 2 3 30 30 H 1.09000 * 109.46917 * 60.00283 * 1 2 3 31 31 H 1.09004 * 109.47003 * 59.99761 * 3 2 1 32 32 H 1.09003 * 109.46974 * 299.99986 * 3 2 1 33 33 H 1.09004 * 109.47221 * 60.00057 * 4 3 2 34 34 H 1.09003 * 109.47296 * 299.99951 * 4 3 2 35 35 H 1.09005 * 109.47440 * 30.02825 * 7 6 5 36 36 H 1.09003 * 109.47379 * 150.02721 * 7 6 5 37 37 H 1.08995 * 109.47304 * 300.00180 * 8 7 6 38 38 H 1.09003 * 109.46664 * 59.99668 * 8 7 6 39 39 H 1.09004 * 109.46973 * 300.00254 * 9 8 7 40 40 H 1.08997 * 109.46745 * 60.00066 * 9 8 7 41 41 H 0.97001 * 120.00351 * 179.97438 * 13 12 10 42 42 H 0.97000 * 119.99360 * 179.97438 * 21 20 19 43 43 H 1.08005 * 126.06226 * 0.03812 * 23 22 21 44 44 H 1.07993 * 126.07196 * 180.11722 * 24 23 22 45 45 H 1.09005 * 109.46775 * 270.00169 * 26 25 24 46 46 H 1.09002 * 109.47559 * 29.99201 * 26 25 24 47 47 H 1.08994 * 109.47502 * 149.99699 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 4.1312 2.5232 0.0000 6 6 4.4663 3.2769 -1.0901 7 6 4.2919 2.8849 -2.5347 8 6 5.5506 2.1655 -3.0236 9 6 5.3733 1.7669 -4.4901 10 6 6.6128 1.0577 -4.9713 11 1 7.4442 0.9068 -4.2986 12 6 6.6860 0.6025 -6.2707 13 7 5.6739 0.7868 -7.0900 14 14 8.2228 -0.2759 -6.8675 15 1 8.0840 -1.7347 -6.6268 16 1 8.4014 -0.0288 -8.3209 17 1 9.4045 0.2373 -6.1292 18 7 4.9646 4.3972 -0.6487 19 7 4.9665 4.4026 0.6366 20 6 4.4659 3.2765 1.0878 21 7 4.3064 2.9200 2.4181 22 6 4.6986 3.8033 3.4316 23 6 5.2695 5.0726 3.2445 24 6 5.5014 5.6073 4.4648 25 7 5.1023 4.7112 5.3921 26 6 5.1793 4.8840 6.8448 27 7 4.6021 3.5872 4.7225 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8574 0.6437 -0.8891 34 1 3.8567 0.6441 0.8909 35 1 3.4334 2.2200 -2.6297 36 1 4.1275 3.7787 -3.1365 37 1 6.4091 2.8302 -2.9287 38 1 5.7150 1.2716 -2.4218 39 1 4.5148 1.1018 -4.5846 40 1 5.2087 2.6605 -5.0920 41 1 5.7255 0.4669 -8.0043 42 1 3.9232 2.0587 2.6467 43 1 5.4830 5.5400 2.2946 44 1 5.9334 6.5771 4.6625 45 1 6.1373 4.5088 7.2050 46 1 5.0883 5.9421 7.0902 47 1 4.3700 4.3298 7.3200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514533037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:58 Heat of formation + Delta-G solvation = 121.622602 kcal Electronic energy + Delta-G solvation = -28174.711330 eV Core-core repulsion = 24203.542961 eV Total energy + Delta-G solvation = -3971.168369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.92547 -41.24651 -38.36534 -36.56598 -35.47684 -34.55176 -32.73403 -32.16223 -30.41228 -30.08984 -29.34448 -26.96675 -26.65966 -26.39386 -24.11374 -23.51035 -22.39318 -21.63759 -20.54407 -20.30752 -19.89102 -17.90499 -17.43067 -16.93189 -16.53006 -16.27696 -16.25851 -15.83911 -15.71921 -15.56368 -15.05576 -14.50571 -14.10156 -13.94824 -13.84824 -13.52111 -13.46276 -13.16454 -12.76149 -12.68918 -12.41759 -12.11782 -11.92121 -11.72899 -11.60818 -11.50907 -11.22710 -10.85260 -10.76666 -10.75426 -10.54448 -10.19866 -10.16700 -10.07395 -9.72830 -9.55166 -9.29838 -9.08731 -8.68774 -8.34175 -7.73184 -5.99485 -4.01452 1.57892 1.60506 1.98817 2.33670 2.81860 3.00524 3.18265 3.33265 3.39757 3.43894 3.60218 4.26781 4.37981 4.46461 4.52326 4.59727 4.65413 4.83026 4.84099 4.95370 4.99741 5.02988 5.07383 5.09089 5.19378 5.29736 5.33041 5.36802 5.37488 5.64634 5.70644 5.85873 5.90519 5.96464 6.12161 6.46149 6.62178 6.63933 6.68715 6.77928 6.89265 7.01711 7.07390 7.08578 7.66457 7.68066 7.79502 7.99916 8.42488 8.95435 9.05091 9.62691 11.11731 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.011563 B = 0.002527 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.927921 B =11078.030424 C =12701.969033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.048 3.952 4 C 0.107 3.893 5 N -0.491 5.491 6 C 0.204 3.796 7 C -0.035 4.035 8 C -0.103 4.103 9 C 0.023 3.977 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.279 5.279 19 N -0.318 5.318 20 C 0.427 3.573 21 N -0.606 5.606 22 C 0.330 3.670 23 C -0.268 4.268 24 C 0.065 3.935 25 N -0.377 5.377 26 C 0.108 3.892 27 N -0.337 5.337 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.017 0.983 40 H 0.020 0.980 41 H 0.260 0.740 42 H 0.419 0.581 43 H 0.179 0.821 44 H 0.177 0.823 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.017 5.118 25.642 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C -0.031 4.031 4 C -0.017 4.017 5 N -0.192 5.192 6 C -0.064 4.064 7 C -0.075 4.075 8 C -0.142 4.142 9 C -0.015 4.015 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 N -0.116 5.116 19 N -0.164 5.164 20 C 0.070 3.930 21 N -0.244 5.244 22 C 0.074 3.926 23 C -0.300 4.300 24 C -0.081 4.081 25 N -0.162 5.162 26 C -0.033 4.033 27 N -0.169 5.169 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.257 0.743 43 H 0.196 0.804 44 H 0.194 0.806 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.647 5.655 26.491 28.435 hybrid contribution 0.075 -1.550 -0.718 1.710 sum -8.572 4.105 25.773 27.470 Atomic orbital electron populations 1.22800 0.79978 1.03240 1.00315 1.87826 1.20515 1.26351 1.95532 1.22764 0.92785 0.85823 1.01688 1.21615 0.92275 0.80794 1.06988 1.45990 1.51116 1.16487 1.05586 1.25146 1.00792 0.88824 0.91592 1.20373 1.01214 1.02385 0.83506 1.21668 0.94344 0.98166 1.00041 1.19102 0.97184 0.96648 0.88522 1.21219 1.01525 1.36649 0.96384 0.92721 1.25006 0.96269 0.96214 0.96920 1.69955 1.30661 1.46849 1.05982 0.86609 0.83633 0.79927 0.77942 1.20730 1.21217 1.19867 1.74078 1.18017 1.17612 1.01846 1.74533 1.23276 1.15217 1.03356 1.20544 1.00712 0.90203 0.81543 1.39190 1.68118 1.19430 0.97654 1.18695 0.96728 0.90379 0.86843 1.21881 1.12334 0.95790 0.99961 1.22533 1.00498 0.96614 0.88430 1.47986 1.49982 1.12053 1.06148 1.21787 1.03529 1.03049 0.74961 1.77309 1.28125 1.08329 1.03093 0.89054 0.93996 0.93508 0.92879 0.91750 0.86228 0.88357 0.90492 0.88274 0.92296 0.93552 0.96498 0.96131 0.93013 0.74300 0.80416 0.80579 0.91006 0.89474 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.02 10.70 -35.23 -0.38 -4.40 16 3 C 0.05 0.47 6.26 37.15 0.23 0.70 16 4 C 0.11 1.15 6.13 -4.04 -0.02 1.12 16 5 N -0.49 -6.71 2.81 -114.06 -0.32 -7.03 16 6 C 0.20 3.30 7.32 -154.03 -1.13 2.17 16 7 C -0.04 -0.57 5.42 -27.89 -0.15 -0.72 16 8 C -0.10 -2.06 5.14 -26.73 -0.14 -2.19 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 11 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 N -0.28 -5.08 12.18 32.99 0.40 -4.67 16 19 N -0.32 -5.42 9.17 30.34 0.28 -5.15 16 20 C 0.43 6.23 8.57 -318.71 -2.73 3.49 16 21 N -0.61 -7.54 5.60 -12.24 -0.07 -7.61 16 22 C 0.33 4.43 8.12 -154.48 -1.25 3.17 16 23 C -0.27 -3.47 9.78 -39.83 -0.39 -3.86 16 24 C 0.06 0.63 11.48 -17.24 -0.20 0.43 16 25 N -0.38 -3.75 4.01 -68.18 -0.27 -4.02 16 26 C 0.11 0.55 11.47 59.85 0.69 1.23 16 27 N -0.34 -4.31 12.59 31.42 0.40 -3.92 16 28 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.12 1.36 7.88 -51.93 -0.41 0.95 16 34 H 0.10 0.87 7.65 -51.93 -0.40 0.47 16 35 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 36 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.42 4.20 8.28 -40.82 -0.34 3.86 16 43 H 0.18 2.56 5.93 -52.48 -0.31 2.25 16 44 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 47 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -35.48 399.08 -10.10 -45.58 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.33 Total: 0.34 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -4.53 Total: -5.98 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 1.15 Total: -58.19 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.38 Total: -4.40 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.48 -10.10 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514533037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.200 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds