Wall clock time and date at job start Tue Mar 31 2020 18:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99622 * 2 1 4 4 C 1.52994 * 109.47166 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47360 * 179.97438 * 4 3 2 6 6 C 1.36705 * 127.13898 * 270.05286 * 5 4 3 7 7 C 1.50696 * 126.34317 * 359.97321 * 6 5 4 8 8 C 1.52998 * 109.47608 * 270.02615 * 7 6 5 9 9 C 1.53001 * 109.47755 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47363 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99948 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00013 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00017 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00249 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46899 * 89.99638 * 14 12 10 16 16 H 1.48497 * 109.47348 * 209.99779 * 14 12 10 17 17 H 1.48492 * 109.46854 * 330.00166 * 14 12 10 18 18 N 1.30315 * 107.31666 * 179.97438 * 6 5 4 19 19 N 1.28534 * 110.05214 * 359.97438 * 18 6 5 20 20 C 1.31231 * 109.85509 * 0.02562 * 19 18 6 21 21 N 1.38646 * 126.47125 * 180.02562 * 20 19 18 22 22 C 1.40038 * 120.00048 * 359.96978 * 21 20 19 23 23 C 1.40430 * 125.98221 * 359.71718 * 22 21 20 24 24 C 1.35233 * 107.87266 * 179.88515 * 23 22 21 25 25 N 1.34976 * 107.86064 * 0.37411 * 24 23 22 26 26 C 1.46500 * 125.97038 * 179.74518 * 25 24 23 27 27 N 1.31242 * 125.97451 * 180.02562 * 22 21 20 28 28 H 1.09008 * 109.46729 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47258 * 300.00161 * 1 2 3 30 30 H 1.09000 * 109.46917 * 60.00283 * 1 2 3 31 31 H 1.09004 * 109.47003 * 59.99761 * 3 2 1 32 32 H 1.09003 * 109.46974 * 299.99986 * 3 2 1 33 33 H 1.09004 * 109.47221 * 60.00057 * 4 3 2 34 34 H 1.09003 * 109.47296 * 299.99951 * 4 3 2 35 35 H 1.09005 * 109.47440 * 30.02825 * 7 6 5 36 36 H 1.09003 * 109.47379 * 150.02721 * 7 6 5 37 37 H 1.08995 * 109.47304 * 300.00180 * 8 7 6 38 38 H 1.09003 * 109.46664 * 59.99668 * 8 7 6 39 39 H 1.09004 * 109.46973 * 300.00254 * 9 8 7 40 40 H 1.08997 * 109.46745 * 60.00066 * 9 8 7 41 41 H 0.97001 * 120.00351 * 179.97438 * 13 12 10 42 42 H 0.97000 * 119.99360 * 179.97438 * 21 20 19 43 43 H 1.08005 * 126.06226 * 0.03812 * 23 22 21 44 44 H 1.07993 * 126.07196 * 180.11722 * 24 23 22 45 45 H 1.09005 * 109.46775 * 270.00169 * 26 25 24 46 46 H 1.09002 * 109.47559 * 29.99201 * 26 25 24 47 47 H 1.08994 * 109.47502 * 149.99699 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 4.1312 2.5232 0.0000 6 6 4.4663 3.2769 -1.0901 7 6 4.2919 2.8849 -2.5347 8 6 5.5506 2.1655 -3.0236 9 6 5.3733 1.7669 -4.4901 10 6 6.6128 1.0577 -4.9713 11 1 7.4442 0.9068 -4.2986 12 6 6.6860 0.6025 -6.2707 13 7 5.6739 0.7868 -7.0900 14 14 8.2228 -0.2759 -6.8675 15 1 8.0840 -1.7347 -6.6268 16 1 8.4014 -0.0288 -8.3209 17 1 9.4045 0.2373 -6.1292 18 7 4.9646 4.3972 -0.6487 19 7 4.9665 4.4026 0.6366 20 6 4.4659 3.2765 1.0878 21 7 4.3064 2.9200 2.4181 22 6 4.6986 3.8033 3.4316 23 6 5.2695 5.0726 3.2445 24 6 5.5014 5.6073 4.4648 25 7 5.1023 4.7112 5.3921 26 6 5.1793 4.8840 6.8448 27 7 4.6021 3.5872 4.7225 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8574 0.6437 -0.8891 34 1 3.8567 0.6441 0.8909 35 1 3.4334 2.2200 -2.6297 36 1 4.1275 3.7787 -3.1365 37 1 6.4091 2.8302 -2.9287 38 1 5.7150 1.2716 -2.4218 39 1 4.5148 1.1018 -4.5846 40 1 5.2087 2.6605 -5.0920 41 1 5.7255 0.4669 -8.0043 42 1 3.9232 2.0587 2.6467 43 1 5.4830 5.5400 2.2946 44 1 5.9334 6.5771 4.6625 45 1 6.1373 4.5088 7.2050 46 1 5.0883 5.9421 7.0902 47 1 4.3700 4.3298 7.3200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514533037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:57 Heat of formation + Delta-G solvation = 102.429448 kcal Electronic energy + Delta-G solvation = -28175.543607 eV Core-core repulsion = 24203.542961 eV Total energy + Delta-G solvation = -3972.000647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.10952 -42.08368 -39.13695 -37.58575 -36.77094 -36.00446 -34.37292 -33.21462 -31.46235 -31.03958 -30.64164 -28.55293 -27.37190 -27.06936 -25.68658 -24.65290 -23.44172 -22.69540 -22.03554 -21.41706 -21.00956 -18.89589 -18.43765 -18.25893 -17.81856 -17.47911 -17.08045 -16.75468 -16.60408 -16.50146 -16.37732 -15.91679 -15.55255 -15.22458 -14.60415 -14.50451 -14.35855 -14.09445 -13.93559 -13.82277 -13.47219 -13.28954 -13.24877 -12.78187 -12.74528 -12.67267 -12.53246 -12.39901 -12.35520 -12.28603 -11.69617 -11.60299 -11.42942 -11.29807 -11.24784 -11.14601 -10.81123 -10.50983 -10.34592 -9.61838 -8.77224 -8.16729 -6.26265 0.57277 0.59558 1.03958 1.41657 1.42685 1.51232 1.53685 1.73201 2.07886 2.19303 2.43511 2.78162 3.16743 3.33545 3.45988 3.70995 3.75414 3.86868 3.91397 4.05710 4.11203 4.31103 4.37595 4.39076 4.42617 4.48882 4.52134 4.53843 4.59673 4.66311 4.76650 4.80032 4.82624 4.88858 4.93272 5.06420 5.12385 5.22108 5.47626 5.55683 5.59039 5.78851 5.89461 5.94202 6.02247 6.14576 6.20626 6.29446 6.79107 6.89706 7.42152 7.74155 8.94507 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.011563 B = 0.002527 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.927921 B =11078.030424 C =12701.969033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.054 3.946 4 C 0.103 3.897 5 N -0.483 5.483 6 C 0.199 3.801 7 C -0.022 4.022 8 C -0.086 4.086 9 C 0.027 3.973 10 C -0.542 4.542 11 H 0.054 0.946 12 C 0.003 3.997 13 N -0.929 5.929 14 Si 0.958 3.042 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.268 1.268 18 N -0.310 5.310 19 N -0.343 5.343 20 C 0.437 3.563 21 N -0.596 5.596 22 C 0.310 3.690 23 C -0.308 4.308 24 C 0.086 3.914 25 N -0.373 5.373 26 C 0.097 3.903 27 N -0.358 5.358 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.005 0.995 40 H -0.002 1.002 41 H 0.263 0.737 42 H 0.430 0.570 43 H 0.159 0.841 44 H 0.219 0.781 45 H 0.085 0.915 46 H 0.120 0.880 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 4.803 27.942 29.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.024 4.024 4 C -0.019 4.019 5 N -0.183 5.183 6 C -0.070 4.070 7 C -0.062 4.062 8 C -0.125 4.125 9 C -0.010 4.010 10 C -0.580 4.580 11 H 0.072 0.928 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.783 3.217 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.193 1.193 18 N -0.146 5.146 19 N -0.189 5.189 20 C 0.080 3.920 21 N -0.236 5.236 22 C 0.054 3.946 23 C -0.339 4.339 24 C -0.061 4.061 25 N -0.156 5.156 26 C -0.042 4.042 27 N -0.190 5.190 28 H 0.122 0.878 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.017 0.983 41 H 0.072 0.928 42 H 0.269 0.731 43 H 0.176 0.824 44 H 0.236 0.764 45 H 0.103 0.897 46 H 0.139 0.861 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.500 5.308 28.841 30.532 hybrid contribution -0.003 -1.417 -1.271 1.903 sum -8.503 3.891 27.570 29.112 Atomic orbital electron populations 1.22994 0.78600 1.04369 1.01021 1.87796 1.22058 1.26448 1.95647 1.22652 0.91993 0.85853 1.01868 1.21829 0.92983 0.79306 1.07825 1.45984 1.50727 1.17055 1.04567 1.24891 1.01264 0.89014 0.91818 1.20138 0.99960 1.02330 0.83740 1.21367 0.95678 0.98405 0.97068 1.18983 0.95691 0.95097 0.91228 1.21656 1.02534 1.36946 0.96845 0.92779 1.25877 0.99469 0.97014 0.97165 1.70069 1.32624 1.47834 1.06372 0.85546 0.79722 0.78971 0.77412 1.19703 1.20727 1.19292 1.74006 1.18958 1.18927 1.02734 1.74503 1.24827 1.16693 1.02902 1.20599 0.99396 0.89674 0.82377 1.39163 1.67840 1.19842 0.96746 1.18905 0.97641 0.90838 0.87188 1.21882 1.14908 0.96481 1.00658 1.23063 0.98289 0.97490 0.87258 1.48441 1.48354 1.11026 1.07815 1.22224 1.04400 1.05495 0.72109 1.77234 1.28917 1.10062 1.02817 0.87796 0.92779 0.93325 0.92058 0.92236 0.86709 0.86243 0.88498 0.88367 0.93725 0.92970 0.97706 0.98325 0.92791 0.73066 0.82393 0.76439 0.89682 0.86128 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.88 10.70 -148.98 -1.59 -9.47 16 3 C 0.05 1.02 6.26 71.98 0.45 1.47 16 4 C 0.10 2.11 6.13 86.38 0.53 2.64 16 5 N -0.48 -13.03 2.81 -514.77 -1.45 -14.47 16 6 C 0.20 6.48 7.32 137.64 1.01 7.49 16 7 C -0.02 -0.72 5.42 29.85 0.16 -0.56 16 8 C -0.09 -3.48 5.14 30.59 0.16 -3.33 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 11 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 12 C 0.00 0.16 5.46 84.65 0.46 0.62 16 13 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 14 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 N -0.31 -11.52 12.18 -49.55 -0.60 -12.12 16 19 N -0.34 -11.98 9.17 -57.93 -0.53 -12.51 16 20 C 0.44 12.76 8.57 260.06 2.23 14.99 16 21 N -0.60 -14.63 5.60 -192.64 -1.08 -15.71 16 22 C 0.31 8.18 8.12 133.37 1.08 9.27 16 23 C -0.31 -7.89 9.78 22.11 0.22 -7.67 16 24 C 0.09 1.49 11.48 83.52 0.96 2.45 16 25 N -0.37 -6.54 4.01 -369.62 -1.48 -8.03 16 26 C 0.10 0.67 11.47 127.77 1.47 2.14 16 27 N -0.36 -8.75 12.59 -54.50 -0.69 -9.43 16 28 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 2.51 7.88 -2.39 -0.02 2.49 16 34 H 0.12 1.93 7.65 -2.39 -0.02 1.91 16 35 H 0.10 2.76 7.92 -2.38 -0.02 2.74 16 36 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.43 8.24 8.28 -92.71 -0.77 7.47 16 43 H 0.16 4.71 5.93 -2.91 -0.02 4.69 16 44 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 46 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -77.99 399.08 5.45 -72.54 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.21 Total: 15.95 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 10.35 Total: 2.21 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -5.54 Total: -127.69 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.59 Total: -9.47 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -77.99 5.45 -72.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514533037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.969 kcal (2) G-P(sol) polarization free energy of solvation -77.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds