Wall clock time and date at job start Tue Mar 31 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00032 * 2 1 4 4 C 1.52997 * 109.47020 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46875 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46857 * 179.97438 * 5 4 3 7 7 C 1.46892 * 111.00233 * 66.04468 * 6 5 4 8 8 C 1.38582 * 110.99879 * 189.99890 * 6 5 4 9 9 N 1.31206 * 126.38031 * 296.24561 * 8 6 5 10 10 N 1.28503 * 110.10145 * 180.02562 * 9 8 6 11 11 C 1.31215 * 109.96482 * 0.02562 * 10 9 8 12 12 C 1.47989 * 126.47322 * 180.02562 * 11 10 9 13 13 C 1.41014 * 126.25584 * 165.00338 * 12 11 10 14 14 N 1.30638 * 108.08405 * 180.02562 * 13 12 11 15 15 N 1.39999 * 108.58691 * 359.97438 * 14 13 12 16 16 C 1.46503 * 125.86656 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47161 * 305.02065 * 16 15 14 18 18 H 1.08001 * 119.99835 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00284 * 179.97438 * 17 16 15 20 20 N 1.31504 * 120.00392 * 180.27533 * 19 17 16 21 21 Si 1.86803 * 119.99468 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47425 * 89.99468 * 21 19 17 23 23 H 1.48503 * 109.46827 * 209.99441 * 21 19 17 24 24 H 1.48501 * 109.47333 * 329.99426 * 21 19 17 25 25 C 1.34818 * 108.25986 * 0.26219 * 15 14 13 26 26 N 1.36649 * 126.37870 * 116.59639 * 8 6 5 27 27 C 1.46494 * 127.18370 * 359.97438 * 26 8 6 28 28 H 1.09000 * 109.47523 * 300.00581 * 1 2 3 29 29 H 1.09005 * 109.46863 * 60.00702 * 1 2 3 30 30 H 1.09004 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47110 * 59.99282 * 3 2 1 32 32 H 1.09003 * 109.46485 * 299.99472 * 3 2 1 33 33 H 1.08994 * 109.47372 * 59.99420 * 4 3 2 34 34 H 1.09003 * 109.47238 * 299.99228 * 4 3 2 35 35 H 1.09000 * 109.47006 * 59.99652 * 5 4 3 36 36 H 1.08995 * 109.46864 * 299.99474 * 5 4 3 37 37 H 1.09000 * 109.47632 * 177.77902 * 7 6 5 38 38 H 1.09003 * 109.47311 * 297.78170 * 7 6 5 39 39 H 1.09005 * 109.47288 * 57.77782 * 7 6 5 40 40 H 1.07996 * 125.95668 * 359.97438 * 13 12 11 41 41 H 1.09004 * 109.46611 * 185.02677 * 16 15 14 42 42 H 1.09000 * 109.47120 * 65.02336 * 16 15 14 43 43 H 0.97005 * 120.00644 * 179.72697 * 20 19 17 44 44 H 1.07995 * 126.21046 * 179.73312 * 25 15 14 45 45 H 1.08998 * 109.47425 * 264.64140 * 27 26 8 46 46 H 1.09004 * 109.46959 * 24.63877 * 27 26 8 47 47 H 1.09001 * 109.47566 * 144.63599 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6221 2.4664 0.0012 7 6 6.1040 1.8687 -1.2511 8 6 6.2177 3.6975 0.2253 9 7 6.1441 4.7509 -0.5534 10 7 6.8137 5.7231 -0.0457 11 6 7.3565 5.3489 1.0888 12 6 8.2009 6.1794 1.9761 13 6 8.5384 5.8920 3.3148 14 7 9.2958 6.8595 3.7587 15 7 9.4721 7.7950 2.7322 16 6 10.2565 9.0292 2.8210 17 6 9.7694 9.8512 3.9863 18 1 8.9571 9.4903 4.5997 19 6 10.3615 11.0636 4.2701 20 7 9.9400 11.7785 5.2903 21 14 11.7670 11.6875 3.2096 22 1 11.2214 12.4972 2.0907 23 1 12.6731 12.5280 4.0330 24 1 12.5241 10.5333 2.6620 25 6 8.7917 7.3676 1.6496 26 7 6.9964 4.0384 1.2952 27 6 7.3676 3.1861 2.4274 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8574 0.6435 -0.8890 34 1 3.8567 0.6440 0.8909 35 1 3.8357 3.1239 0.8895 36 1 3.8365 3.1227 -0.8905 37 1 7.1932 1.8306 -1.2401 38 1 5.7061 0.8586 -1.3483 39 1 5.7701 2.4734 -2.0944 40 1 8.2247 5.0240 3.8755 41 1 10.1407 9.6003 1.8999 42 1 11.3082 8.7816 2.9653 43 1 10.3592 12.6296 5.4924 44 1 8.7271 7.8716 0.6967 45 1 6.6773 3.3580 3.2533 46 1 7.3196 2.1398 2.1256 47 1 8.3820 3.4262 2.7458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519188448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:16 Heat of formation + Delta-G solvation = 125.129140 kcal Electronic energy + Delta-G solvation = -27752.479583 eV Core-core repulsion = 23781.463269 eV Total energy + Delta-G solvation = -3971.016314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.77649 -40.63212 -38.68478 -37.69697 -34.96079 -33.83489 -32.92352 -31.95849 -30.95938 -28.81430 -27.78403 -27.69670 -27.42896 -26.36996 -24.61388 -23.44155 -22.25390 -21.79243 -20.81672 -20.02431 -19.78089 -17.49819 -17.10698 -16.95067 -16.70355 -16.46207 -16.30329 -15.91322 -15.37733 -14.92150 -14.78824 -14.62120 -14.52386 -14.13541 -13.71305 -13.49984 -13.37514 -12.89130 -12.68073 -12.58237 -12.56289 -12.31832 -12.27859 -12.14774 -11.97125 -11.54116 -11.50878 -11.19853 -11.17718 -10.85632 -10.67671 -10.47030 -10.17727 -10.10428 -10.09891 -9.73297 -9.55279 -9.06561 -8.91175 -8.80520 -7.68879 -6.30552 -4.34585 1.52039 2.15462 2.42247 2.71687 3.07598 3.13296 3.17422 3.19533 3.26552 3.50869 3.67896 4.16707 4.46442 4.53513 4.61352 4.65808 4.70964 4.88470 4.94323 4.94987 4.98177 4.99820 5.02296 5.05605 5.07027 5.12591 5.20590 5.24167 5.31232 5.33673 5.41101 5.50637 5.61845 5.68128 5.75859 5.82393 6.02289 6.24930 6.29070 6.35658 6.49222 6.56491 6.71174 6.87750 7.16639 7.19675 7.47669 8.15601 8.25856 8.77133 8.82996 9.23009 10.81808 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.025962 B = 0.001889 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.221175 B =14817.351065 C =15062.107832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.062 3.938 4 C -0.115 4.115 5 C 0.070 3.930 6 N -0.463 5.463 7 C 0.033 3.967 8 C 0.322 3.678 9 N -0.305 5.305 10 N -0.297 5.297 11 C 0.300 3.700 12 C -0.211 4.211 13 C 0.040 3.960 14 N -0.263 5.263 15 N -0.315 5.315 16 C 0.226 3.774 17 C -0.540 4.540 18 H 0.087 0.913 19 C 0.079 3.921 20 N -0.884 5.884 21 Si 0.872 3.128 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.264 1.264 25 C 0.112 3.888 26 N -0.468 5.468 27 C 0.077 3.923 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.176 0.824 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.270 0.730 44 H 0.181 0.819 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.784 -23.516 -10.938 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.153 4.153 5 C -0.058 4.058 6 N -0.188 5.188 7 C -0.115 4.115 8 C -0.034 4.034 9 N -0.149 5.149 10 N -0.139 5.139 11 C 0.035 3.965 12 C -0.227 4.227 13 C -0.148 4.148 14 N -0.084 5.084 15 N -0.092 5.092 16 C 0.108 3.892 17 C -0.578 4.578 18 H 0.105 0.895 19 C -0.125 4.125 20 N -0.520 5.520 21 Si 0.698 3.302 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.042 4.042 26 N -0.160 5.160 27 C -0.066 4.066 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.193 0.807 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.198 0.802 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.111 -22.363 -10.566 27.115 hybrid contribution 0.069 0.029 -0.547 0.552 sum -11.042 -22.334 -11.113 27.281 Atomic orbital electron populations 1.22751 0.80816 1.02819 1.00118 1.87855 1.19865 1.27952 1.95469 1.22449 0.93785 0.84732 1.00554 1.21485 0.92704 0.96718 1.04346 1.22035 0.84161 0.96914 1.02645 1.58517 1.06787 1.16150 1.37335 1.22474 1.01149 0.99580 0.88252 1.22014 0.99596 0.93253 0.88521 1.74444 1.18798 0.97150 1.24552 1.74386 1.11764 1.20846 1.06858 1.21886 0.98555 0.81199 0.94843 1.17198 1.12136 0.98959 0.94390 1.23868 0.98883 0.99093 0.92952 1.77405 1.19611 0.99365 1.11990 1.49084 1.35498 1.18034 1.06598 1.20206 0.91078 0.77897 1.00016 1.21039 1.20961 1.03268 1.12543 0.89513 1.24806 0.96636 0.96021 0.95068 1.69857 1.41427 1.13482 1.27277 0.86919 0.82616 0.79780 0.80866 1.19563 1.20414 1.18853 1.22548 0.93534 0.94225 0.93941 1.46106 1.38956 1.11406 1.19553 1.22140 1.02346 0.95116 0.86959 0.93972 0.93999 0.89562 0.93049 0.93078 0.90562 0.90015 0.90408 0.92574 0.91179 0.89859 0.93427 0.80690 0.93010 0.93435 0.92021 0.80200 0.90181 0.88660 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.29 10.70 -35.23 -0.38 -3.67 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.11 -0.80 5.51 -26.73 -0.15 -0.95 16 5 C 0.07 0.61 4.89 -3.82 -0.02 0.59 16 6 N -0.46 -4.64 4.75 -182.32 -0.87 -5.50 16 7 C 0.03 0.28 9.19 60.06 0.55 0.83 16 8 C 0.32 4.33 6.39 -318.61 -2.04 2.29 16 9 N -0.31 -5.02 12.16 30.35 0.37 -4.65 16 10 N -0.30 -5.32 12.21 32.60 0.40 -4.92 16 11 C 0.30 4.85 7.91 -153.84 -1.22 3.64 16 12 C -0.21 -3.56 6.05 -105.42 -0.64 -4.20 16 13 C 0.04 0.66 10.80 -17.01 -0.18 0.48 16 14 N -0.26 -5.45 12.36 30.83 0.38 -5.06 16 15 N -0.32 -6.57 3.66 -62.22 -0.23 -6.80 16 16 C 0.23 5.08 5.32 -5.19 -0.03 5.05 16 17 C -0.54 -14.70 9.79 -34.44 -0.34 -15.03 16 18 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 19 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 20 N -0.88 -25.91 13.96 55.43 0.77 -25.13 16 21 Si 0.87 19.57 27.47 -169.99 -4.67 14.90 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 25 C 0.11 2.02 11.40 -16.81 -0.19 1.83 16 26 N -0.47 -6.16 3.23 -121.99 -0.39 -6.55 16 27 C 0.08 0.68 9.82 59.84 0.59 1.27 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.51 6.60 -51.93 -0.34 0.16 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.08 0.51 6.58 -51.93 -0.34 0.17 16 39 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 40 H 0.18 2.16 6.27 -52.49 -0.33 1.83 16 41 H 0.05 1.05 7.49 -51.93 -0.39 0.67 16 42 H 0.05 1.05 7.20 -51.93 -0.37 0.68 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.18 2.80 8.06 -52.49 -0.42 2.37 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 47 H 0.09 0.75 6.55 -51.93 -0.34 0.41 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -33.85 393.34 -8.30 -42.15 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.19 Total: -0.48 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.42 Total: -0.21 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.43 Total: -58.62 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.38 Total: -3.67 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.67 Total: 14.90 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.85 -8.30 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519188448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.278 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds