Wall clock time and date at job start Tue Mar 31 2020 18:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00032 * 2 1 4 4 C 1.52997 * 109.47020 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46875 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46857 * 179.97438 * 5 4 3 7 7 C 1.46892 * 111.00233 * 66.04468 * 6 5 4 8 8 C 1.38582 * 110.99879 * 189.99890 * 6 5 4 9 9 N 1.31206 * 126.38031 * 296.24561 * 8 6 5 10 10 N 1.28503 * 110.10145 * 180.02562 * 9 8 6 11 11 C 1.31215 * 109.96482 * 0.02562 * 10 9 8 12 12 C 1.47989 * 126.47322 * 180.02562 * 11 10 9 13 13 C 1.41014 * 126.25584 * 165.00338 * 12 11 10 14 14 N 1.30638 * 108.08405 * 180.02562 * 13 12 11 15 15 N 1.39999 * 108.58691 * 359.97438 * 14 13 12 16 16 C 1.46503 * 125.86656 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47161 * 305.02065 * 16 15 14 18 18 H 1.08001 * 119.99835 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00284 * 179.97438 * 17 16 15 20 20 N 1.31504 * 120.00392 * 180.27533 * 19 17 16 21 21 Si 1.86803 * 119.99468 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47425 * 89.99468 * 21 19 17 23 23 H 1.48503 * 109.46827 * 209.99441 * 21 19 17 24 24 H 1.48501 * 109.47333 * 329.99426 * 21 19 17 25 25 C 1.34818 * 108.25986 * 0.26219 * 15 14 13 26 26 N 1.36649 * 126.37870 * 116.59639 * 8 6 5 27 27 C 1.46494 * 127.18370 * 359.97438 * 26 8 6 28 28 H 1.09000 * 109.47523 * 300.00581 * 1 2 3 29 29 H 1.09005 * 109.46863 * 60.00702 * 1 2 3 30 30 H 1.09004 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47110 * 59.99282 * 3 2 1 32 32 H 1.09003 * 109.46485 * 299.99472 * 3 2 1 33 33 H 1.08994 * 109.47372 * 59.99420 * 4 3 2 34 34 H 1.09003 * 109.47238 * 299.99228 * 4 3 2 35 35 H 1.09000 * 109.47006 * 59.99652 * 5 4 3 36 36 H 1.08995 * 109.46864 * 299.99474 * 5 4 3 37 37 H 1.09000 * 109.47632 * 177.77902 * 7 6 5 38 38 H 1.09003 * 109.47311 * 297.78170 * 7 6 5 39 39 H 1.09005 * 109.47288 * 57.77782 * 7 6 5 40 40 H 1.07996 * 125.95668 * 359.97438 * 13 12 11 41 41 H 1.09004 * 109.46611 * 185.02677 * 16 15 14 42 42 H 1.09000 * 109.47120 * 65.02336 * 16 15 14 43 43 H 0.97005 * 120.00644 * 179.72697 * 20 19 17 44 44 H 1.07995 * 126.21046 * 179.73312 * 25 15 14 45 45 H 1.08998 * 109.47425 * 264.64140 * 27 26 8 46 46 H 1.09004 * 109.46959 * 24.63877 * 27 26 8 47 47 H 1.09001 * 109.47566 * 144.63599 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6221 2.4664 0.0012 7 6 6.1040 1.8687 -1.2511 8 6 6.2177 3.6975 0.2253 9 7 6.1441 4.7509 -0.5534 10 7 6.8137 5.7231 -0.0457 11 6 7.3565 5.3489 1.0888 12 6 8.2009 6.1794 1.9761 13 6 8.5384 5.8920 3.3148 14 7 9.2958 6.8595 3.7587 15 7 9.4721 7.7950 2.7322 16 6 10.2565 9.0292 2.8210 17 6 9.7694 9.8512 3.9863 18 1 8.9571 9.4903 4.5997 19 6 10.3615 11.0636 4.2701 20 7 9.9400 11.7785 5.2903 21 14 11.7670 11.6875 3.2096 22 1 11.2214 12.4972 2.0907 23 1 12.6731 12.5280 4.0330 24 1 12.5241 10.5333 2.6620 25 6 8.7917 7.3676 1.6496 26 7 6.9964 4.0384 1.2952 27 6 7.3676 3.1861 2.4274 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8574 0.6435 -0.8890 34 1 3.8567 0.6440 0.8909 35 1 3.8357 3.1239 0.8895 36 1 3.8365 3.1227 -0.8905 37 1 7.1932 1.8306 -1.2401 38 1 5.7061 0.8586 -1.3483 39 1 5.7701 2.4734 -2.0944 40 1 8.2247 5.0240 3.8755 41 1 10.1407 9.6003 1.8999 42 1 11.3082 8.7816 2.9653 43 1 10.3592 12.6296 5.4924 44 1 8.7271 7.8716 0.6967 45 1 6.6773 3.3580 3.2533 46 1 7.3196 2.1398 2.1256 47 1 8.3820 3.4262 2.7458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519188448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:15 Heat of formation + Delta-G solvation = 103.051314 kcal Electronic energy + Delta-G solvation = -27753.436949 eV Core-core repulsion = 23781.463269 eV Total energy + Delta-G solvation = -3971.973681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.90907 -42.05588 -39.33762 -38.39386 -36.08173 -35.56637 -33.92806 -33.47529 -32.19999 -30.29771 -28.99931 -28.48718 -28.32697 -27.02834 -25.34900 -25.13928 -23.58200 -22.57785 -21.90972 -21.36546 -21.00262 -19.12423 -18.51992 -17.85735 -17.63849 -17.31198 -17.11737 -16.82179 -16.40644 -16.13902 -16.05201 -15.58831 -15.45734 -15.33348 -15.07120 -14.46579 -14.35466 -14.22232 -14.04403 -13.92863 -13.35911 -13.24922 -13.06829 -12.91215 -12.87072 -12.72486 -12.57049 -12.53555 -12.16941 -12.05473 -11.90385 -11.79628 -11.73956 -11.47814 -11.15242 -10.89530 -10.78984 -10.61490 -10.42654 -9.94211 -9.04615 -8.38751 -6.49760 0.34334 1.08029 1.15454 1.36733 1.38515 1.46811 1.47939 1.71231 2.23073 2.27904 2.50809 2.93702 3.00596 3.36793 3.59426 3.81963 3.87527 3.94012 3.99560 4.15277 4.22480 4.27343 4.32004 4.33846 4.39523 4.49367 4.51195 4.52115 4.56448 4.61931 4.65951 4.67068 4.69679 4.85259 4.87076 4.87977 4.96608 5.05023 5.10789 5.19884 5.20089 5.48171 5.60897 5.62213 5.84492 6.18878 6.22293 6.25503 6.54750 6.77999 7.13121 7.65901 8.77951 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.025962 B = 0.001889 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.221175 B =14817.351065 C =15062.107832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.060 3.940 4 C -0.102 4.102 5 C 0.074 3.926 6 N -0.456 5.456 7 C 0.032 3.968 8 C 0.339 3.661 9 N -0.339 5.339 10 N -0.327 5.327 11 C 0.287 3.713 12 C -0.205 4.205 13 C 0.060 3.940 14 N -0.315 5.315 15 N -0.339 5.339 16 C 0.234 3.766 17 C -0.550 4.550 18 H 0.031 0.969 19 C 0.018 3.982 20 N -0.939 5.939 21 Si 0.952 3.048 22 H -0.256 1.256 23 H -0.280 1.280 24 H -0.237 1.237 25 C 0.108 3.892 26 N -0.462 5.462 27 C 0.067 3.933 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.038 0.962 40 H 0.215 0.785 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.273 0.727 44 H 0.200 0.800 45 H 0.097 0.903 46 H 0.115 0.885 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.510 -25.760 -12.541 30.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.017 4.017 4 C -0.140 4.140 5 C -0.053 4.053 6 N -0.182 5.182 7 C -0.114 4.114 8 C -0.018 4.018 9 N -0.183 5.183 10 N -0.168 5.168 11 C 0.021 3.979 12 C -0.220 4.220 13 C -0.128 4.128 14 N -0.135 5.135 15 N -0.117 5.117 16 C 0.114 3.886 17 C -0.588 4.588 18 H 0.049 0.951 19 C -0.182 4.182 20 N -0.578 5.578 21 Si 0.773 3.227 22 H -0.180 1.180 23 H -0.206 1.206 24 H -0.160 1.160 25 C -0.046 4.046 26 N -0.154 5.154 27 C -0.074 4.074 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.057 0.943 40 H 0.232 0.768 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.217 0.783 45 H 0.115 0.885 46 H 0.134 0.866 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.856 -24.656 -12.178 29.565 hybrid contribution -0.224 0.521 -0.023 0.567 sum -11.080 -24.135 -12.201 29.226 Atomic orbital electron populations 1.22918 0.79565 1.03825 1.00769 1.87812 1.21347 1.28565 1.95614 1.22476 0.93697 0.84514 1.00983 1.21355 0.92649 0.95316 1.04668 1.22019 0.83306 0.98021 1.01992 1.58791 1.07342 1.13933 1.38123 1.22565 1.01155 1.00677 0.87039 1.22404 0.98156 0.93558 0.87714 1.74381 1.20024 0.97974 1.25909 1.74282 1.12560 1.22149 1.07814 1.21667 0.99126 0.82431 0.94712 1.17274 1.11542 0.98661 0.94569 1.24466 0.96618 0.98828 0.92865 1.77346 1.22079 1.00748 1.13312 1.48869 1.37074 1.18135 1.07576 1.19988 0.91391 0.78350 0.98846 1.21192 1.19668 1.04277 1.13627 0.95107 1.25869 0.99841 0.95986 0.96489 1.70033 1.43626 1.14294 1.29848 0.85672 0.78428 0.79814 0.78827 1.18041 1.20580 1.16019 1.22959 0.92876 0.94756 0.93977 1.46302 1.38108 1.10722 1.20271 1.22515 1.03216 0.95515 0.86166 0.93406 0.93266 0.88481 0.92767 0.92584 0.89880 0.89949 0.91097 0.93266 0.91428 0.87039 0.94343 0.76845 0.90337 0.92818 0.91827 0.78311 0.88475 0.86606 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.23 10.70 -148.98 -1.59 -7.82 16 3 C 0.06 0.74 5.94 71.98 0.43 1.17 16 4 C -0.10 -1.19 5.51 30.59 0.17 -1.03 16 5 C 0.07 1.15 4.89 86.30 0.42 1.58 16 6 N -0.46 -8.15 4.75 -730.75 -3.47 -11.62 16 7 C 0.03 0.47 9.19 127.69 1.17 1.65 16 8 C 0.34 8.56 6.39 260.02 1.66 10.23 16 9 N -0.34 -10.93 12.16 -57.89 -0.70 -11.63 16 10 N -0.33 -11.54 12.21 -50.77 -0.62 -12.16 16 11 C 0.29 8.97 7.91 136.30 1.08 10.05 16 12 C -0.20 -6.72 6.05 -20.38 -0.12 -6.85 16 13 C 0.06 1.92 10.80 85.55 0.92 2.84 16 14 N -0.31 -13.10 12.36 -56.36 -0.70 -13.80 16 15 N -0.34 -14.16 3.66 -350.77 -1.28 -15.45 16 16 C 0.23 10.39 5.32 85.63 0.46 10.85 16 17 C -0.55 -30.88 9.79 25.60 0.25 -30.63 16 18 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 19 C 0.02 0.97 5.47 84.66 0.46 1.44 16 20 N -0.94 -57.09 13.96 21.45 0.30 -56.79 16 21 Si 0.95 40.00 27.47 68.60 1.88 41.88 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.24 -8.88 6.54 99.48 0.65 -8.23 16 25 C 0.11 3.81 11.40 83.86 0.96 4.77 16 26 N -0.46 -11.26 3.23 -539.87 -1.75 -13.01 16 27 C 0.07 0.98 9.82 127.77 1.25 2.23 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.88 6.60 -2.39 -0.02 0.86 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 36 H 0.05 0.86 8.11 -2.39 -0.02 0.84 16 37 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 38 H 0.11 1.01 6.58 -2.39 -0.02 1.00 16 39 H 0.04 0.65 8.12 -2.38 -0.02 0.63 16 40 H 0.22 4.75 6.27 -2.91 -0.02 4.73 16 41 H 0.08 3.05 7.49 -2.38 -0.02 3.04 16 42 H 0.05 2.31 7.20 -2.39 -0.02 2.29 16 43 H 0.27 15.29 8.31 -92.70 -0.77 14.51 16 44 H 0.20 6.02 8.06 -2.91 -0.02 5.99 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.12 1.25 8.11 -2.39 -0.02 1.23 16 47 H 0.10 1.33 6.55 -2.39 -0.02 1.31 16 Total: -1.00 -77.37 393.34 3.34 -74.03 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.91 Total: 16.59 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 10.36 Total: 9.78 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -8.22 Total: -134.46 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -1.59 Total: -7.82 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.88 Total: 41.88 kcal Total: -77.37 3.34 -74.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519188448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.080 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds