Wall clock time and date at job start Tue Mar 31 2020 18:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.46633 * 2 1 4 4 C 1.36732 * 127.13999 * 269.46134 * 3 2 1 5 5 C 1.50707 * 126.34801 * 359.96996 * 4 3 2 6 6 C 1.52998 * 109.47076 * 270.28657 * 5 4 3 7 7 C 1.53000 * 109.46575 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46786 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99748 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99948 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99946 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99948 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47471 * 89.99934 * 12 10 8 14 14 H 1.48501 * 109.46972 * 210.00273 * 12 10 8 15 15 H 1.48503 * 109.46978 * 329.99820 * 12 10 8 16 16 N 1.30296 * 107.30794 * 180.23458 * 4 3 2 17 17 N 1.28531 * 110.05237 * 359.77527 * 16 4 3 18 18 C 1.31223 * 109.85792 * 359.97438 * 17 16 4 19 19 N 1.38578 * 126.46928 * 179.97438 * 18 17 16 20 20 C 1.46897 * 111.00204 * 299.39098 * 19 18 17 21 21 C 1.46898 * 111.00426 * 63.34871 * 19 18 17 22 22 C 1.50692 * 109.47725 * 169.99420 * 21 19 18 23 23 N 1.31135 * 126.54899 * 89.70831 * 22 21 19 24 24 C 1.34489 * 105.61464 * 179.97438 * 23 22 21 25 25 C 1.50710 * 126.28833 * 180.12823 * 24 23 22 26 26 N 1.29941 * 107.42658 * 0.35260 * 24 23 22 27 27 O 1.21298 * 110.25295 * 359.77823 * 26 24 23 28 28 H 1.09000 * 109.47246 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47468 * 299.99911 * 1 2 3 30 30 H 1.09004 * 109.47196 * 59.99985 * 1 2 3 31 31 H 1.09000 * 109.47216 * 240.00454 * 2 1 3 32 32 H 1.08993 * 109.47372 * 119.99574 * 2 1 3 33 33 H 1.09000 * 109.46386 * 30.28824 * 5 4 3 34 34 H 1.08999 * 109.46983 * 150.28491 * 5 4 3 35 35 H 1.09001 * 109.46894 * 299.99933 * 6 5 4 36 36 H 1.08999 * 109.47350 * 60.00059 * 6 5 4 37 37 H 1.08994 * 109.47216 * 299.99594 * 7 6 5 38 38 H 1.09005 * 109.47214 * 60.00480 * 7 6 5 39 39 H 0.97007 * 119.99380 * 179.97438 * 11 10 8 40 40 H 1.09002 * 109.47363 * 189.24395 * 20 19 18 41 41 H 1.08999 * 109.47278 * 309.24271 * 20 19 18 42 42 H 1.09002 * 109.47118 * 69.24295 * 20 19 18 43 43 H 1.09003 * 109.46808 * 290.00058 * 21 19 18 44 44 H 1.09004 * 109.46999 * 49.99439 * 21 19 18 45 45 H 1.08998 * 109.47019 * 270.24469 * 25 24 23 46 46 H 1.08999 * 109.46576 * 30.23791 * 25 24 23 47 47 H 1.09002 * 109.46838 * 150.24040 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3030 2.1562 -1.0899 5 6 2.1736 1.7477 -2.5348 6 6 3.4877 1.1228 -3.0076 7 6 3.3561 0.7074 -4.4743 8 6 4.6506 0.0925 -4.9403 9 1 5.4837 0.0061 -4.2584 10 6 4.7711 -0.3609 -6.2368 11 7 3.7565 -0.2562 -7.0669 12 14 6.3755 -1.1238 -6.8142 13 1 6.3442 -2.5880 -6.5684 14 1 6.5500 -0.8693 -8.2668 15 1 7.5078 -0.5204 -6.0665 16 7 2.7123 3.3115 -0.6479 17 7 2.7011 3.3208 0.6374 18 6 2.2800 2.1624 1.0878 19 7 2.1350 1.7989 2.4172 20 6 3.4209 1.8651 3.1243 21 6 1.1244 2.6312 3.0834 22 6 0.8163 2.0565 4.4419 23 7 1.4242 2.3441 5.5677 24 6 0.8169 1.5984 6.5078 25 6 1.1503 1.5708 7.9773 26 7 -0.1070 0.9026 5.9157 27 8 -0.1239 1.1510 4.7285 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.3682 1.0202 -2.6358 34 1 1.9493 2.6248 -3.1417 35 1 4.2931 1.8503 -2.9065 36 1 3.7121 0.2456 -2.4007 37 1 2.5508 -0.0202 -4.5750 38 1 3.1316 1.5844 -5.0815 39 1 3.8414 -0.5748 -7.9792 40 1 3.3144 1.4215 4.1143 41 1 4.1748 1.3166 2.5597 42 1 3.7277 2.9063 3.2238 43 1 1.5063 3.6459 3.1961 44 1 0.2154 2.6499 2.4821 45 1 1.9068 0.8086 8.1639 46 1 1.5334 2.5449 8.2812 47 1 0.2519 1.3390 8.5494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520798796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:52 Heat of formation + Delta-G solvation = 145.412390 kcal Electronic energy + Delta-G solvation = -28473.006063 eV Core-core repulsion = 24502.869296 eV Total energy + Delta-G solvation = -3970.136766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.00088 -43.00790 -38.25416 -36.43069 -35.87258 -34.75253 -33.52537 -32.44594 -30.64945 -30.01835 -29.68448 -28.54207 -27.27015 -25.65301 -24.24404 -23.97191 -23.59334 -21.97899 -20.92634 -20.64845 -20.14461 -18.64671 -17.87282 -17.35632 -16.66461 -16.35724 -16.20521 -15.64051 -15.18933 -14.64460 -14.58654 -14.44975 -14.07987 -14.04956 -13.86218 -13.75221 -13.26230 -13.15202 -12.91792 -12.58107 -12.48928 -12.33088 -12.23423 -12.05723 -11.83183 -11.61122 -11.51533 -11.47076 -11.39987 -10.91072 -10.84225 -10.66896 -10.55934 -10.38742 -10.14219 -9.81147 -9.55352 -9.28156 -9.20677 -8.80229 -8.38669 -6.03869 -4.06175 0.62757 1.62503 1.75349 2.12940 2.39652 2.86684 3.13396 3.29755 3.36622 3.40351 3.43928 3.62692 4.32000 4.42015 4.48472 4.52679 4.56628 4.75599 4.79782 4.91523 4.93908 4.98612 5.01614 5.06955 5.14261 5.18201 5.32299 5.32760 5.40842 5.43686 5.50337 5.55294 5.58171 5.77283 5.81489 5.86138 5.99474 6.02670 6.08915 6.48195 6.55958 6.70466 6.97494 7.06662 7.61022 7.73676 7.74114 7.95086 8.37316 8.76218 9.00233 9.58228 11.07267 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.002053 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.104927 B =13638.349341 C =13689.348466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.458 5.458 4 C 0.215 3.785 5 C -0.038 4.038 6 C -0.103 4.103 7 C 0.023 3.977 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 N -0.290 5.290 17 N -0.302 5.302 18 C 0.318 3.682 19 N -0.458 5.458 20 C 0.034 3.966 21 C 0.158 3.842 22 C 0.194 3.806 23 N -0.472 5.472 24 C 0.167 3.833 25 C -0.063 4.063 26 N -0.383 5.383 27 O 0.088 5.912 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.021 0.979 39 H 0.261 0.739 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 2.010 26.388 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.150 5.150 4 C -0.052 4.052 5 C -0.078 4.078 6 C -0.142 4.142 7 C -0.014 4.014 8 C -0.560 4.560 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 N -0.130 5.130 17 N -0.147 5.147 18 C -0.038 4.038 19 N -0.185 5.185 20 C -0.113 4.113 21 C 0.029 3.971 22 C -0.028 4.028 23 N -0.207 5.207 24 C -0.106 4.106 25 C -0.121 4.121 26 N -0.090 5.090 27 O 0.029 5.971 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.123 0.877 44 H 0.133 0.867 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.233 2.514 26.949 28.598 hybrid contribution 0.666 -1.160 -0.458 1.414 sum -8.568 1.353 26.491 27.875 Atomic orbital electron populations 1.22120 0.93683 1.03562 1.03003 1.21937 0.95909 0.78599 1.05472 1.46444 1.49006 1.13862 1.05722 1.25418 0.99476 0.88002 0.92285 1.20424 1.01418 1.02454 0.83514 1.21664 0.93468 0.98800 1.00244 1.19102 0.97255 0.96648 0.88431 1.21212 0.98808 1.39507 0.96434 0.92737 1.25006 0.96473 0.96036 0.96856 1.69956 1.30519 1.47129 1.05741 0.86607 0.84036 0.79508 0.77945 1.20710 1.21170 1.19874 1.74109 1.19030 1.17903 1.01979 1.74553 1.18398 1.17268 1.04479 1.21802 1.05923 0.88964 0.87076 1.58333 1.10418 1.53022 0.96712 1.22524 0.87674 1.02657 0.98466 1.20501 0.97331 0.94932 0.84377 1.28350 0.87053 0.89657 0.97700 1.71940 1.26017 1.24478 0.98260 1.25932 0.91662 0.92720 1.00243 1.20157 1.03371 1.04818 0.83776 1.74670 1.22047 1.21922 0.90400 1.85317 1.46326 1.45738 1.19721 0.90124 0.91927 0.91644 0.87905 0.88321 0.90166 0.88257 0.92374 0.93565 0.96452 0.96098 0.92968 0.90253 0.90508 0.92507 0.87695 0.86743 0.89224 0.88916 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.10 1.02 6.62 -4.04 -0.03 0.99 16 3 N -0.46 -5.91 2.81 -114.08 -0.32 -6.23 16 4 C 0.22 3.33 7.32 -154.02 -1.13 2.21 16 5 C -0.04 -0.60 5.41 -27.88 -0.15 -0.75 16 6 C -0.10 -1.99 5.14 -26.73 -0.14 -2.13 16 7 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 8 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 9 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 12 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 16 N -0.29 -5.08 12.18 32.99 0.40 -4.68 16 17 N -0.30 -4.80 12.19 30.31 0.37 -4.43 16 18 C 0.32 4.13 6.36 -318.87 -2.03 2.10 16 19 N -0.46 -4.64 4.77 -183.76 -0.88 -5.52 16 20 C 0.03 0.33 9.23 60.06 0.55 0.88 16 21 C 0.16 1.33 5.52 -4.98 -0.03 1.30 16 22 C 0.19 1.77 7.14 -13.06 -0.09 1.68 16 23 N -0.47 -4.61 11.00 -9.87 -0.11 -4.72 16 24 C 0.17 1.53 8.22 -156.38 -1.28 0.25 16 25 C -0.06 -0.33 10.51 36.01 0.38 0.05 16 26 N -0.38 -4.03 12.16 30.90 0.38 -3.65 16 27 O 0.09 0.88 11.31 18.10 0.20 1.08 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.10 1.04 7.86 -51.93 -0.41 0.63 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 34 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.08 0.71 7.03 -51.93 -0.37 0.35 16 41 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 42 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 43 H 0.11 0.88 8.07 -51.93 -0.42 0.46 16 44 H 0.11 0.83 8.05 -51.93 -0.42 0.41 16 45 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -33.11 400.62 -9.79 -42.90 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -7.47 Total: -4.57 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -4.11 Total: -7.11 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.58 Total: -54.65 kcal Atomic # 8 Polarization: 0.88 SS G_CDS: 0.20 Total: 1.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.11 -9.79 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520798796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.314 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds