Wall clock time and date at job start Tue Mar 31 2020 18:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.46633 * 2 1 4 4 C 1.36732 * 127.13999 * 269.46134 * 3 2 1 5 5 C 1.50707 * 126.34801 * 359.96996 * 4 3 2 6 6 C 1.52998 * 109.47076 * 270.28657 * 5 4 3 7 7 C 1.53000 * 109.46575 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46786 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99748 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99948 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99946 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99948 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47471 * 89.99934 * 12 10 8 14 14 H 1.48501 * 109.46972 * 210.00273 * 12 10 8 15 15 H 1.48503 * 109.46978 * 329.99820 * 12 10 8 16 16 N 1.30296 * 107.30794 * 180.23458 * 4 3 2 17 17 N 1.28531 * 110.05237 * 359.77527 * 16 4 3 18 18 C 1.31223 * 109.85792 * 359.97438 * 17 16 4 19 19 N 1.38578 * 126.46928 * 179.97438 * 18 17 16 20 20 C 1.46897 * 111.00204 * 299.39098 * 19 18 17 21 21 C 1.46898 * 111.00426 * 63.34871 * 19 18 17 22 22 C 1.50692 * 109.47725 * 169.99420 * 21 19 18 23 23 N 1.31135 * 126.54899 * 89.70831 * 22 21 19 24 24 C 1.34489 * 105.61464 * 179.97438 * 23 22 21 25 25 C 1.50710 * 126.28833 * 180.12823 * 24 23 22 26 26 N 1.29941 * 107.42658 * 0.35260 * 24 23 22 27 27 O 1.21298 * 110.25295 * 359.77823 * 26 24 23 28 28 H 1.09000 * 109.47246 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47468 * 299.99911 * 1 2 3 30 30 H 1.09004 * 109.47196 * 59.99985 * 1 2 3 31 31 H 1.09000 * 109.47216 * 240.00454 * 2 1 3 32 32 H 1.08993 * 109.47372 * 119.99574 * 2 1 3 33 33 H 1.09000 * 109.46386 * 30.28824 * 5 4 3 34 34 H 1.08999 * 109.46983 * 150.28491 * 5 4 3 35 35 H 1.09001 * 109.46894 * 299.99933 * 6 5 4 36 36 H 1.08999 * 109.47350 * 60.00059 * 6 5 4 37 37 H 1.08994 * 109.47216 * 299.99594 * 7 6 5 38 38 H 1.09005 * 109.47214 * 60.00480 * 7 6 5 39 39 H 0.97007 * 119.99380 * 179.97438 * 11 10 8 40 40 H 1.09002 * 109.47363 * 189.24395 * 20 19 18 41 41 H 1.08999 * 109.47278 * 309.24271 * 20 19 18 42 42 H 1.09002 * 109.47118 * 69.24295 * 20 19 18 43 43 H 1.09003 * 109.46808 * 290.00058 * 21 19 18 44 44 H 1.09004 * 109.46999 * 49.99439 * 21 19 18 45 45 H 1.08998 * 109.47019 * 270.24469 * 25 24 23 46 46 H 1.08999 * 109.46576 * 30.23791 * 25 24 23 47 47 H 1.09002 * 109.46838 * 150.24040 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3030 2.1562 -1.0899 5 6 2.1736 1.7477 -2.5348 6 6 3.4877 1.1228 -3.0076 7 6 3.3561 0.7074 -4.4743 8 6 4.6506 0.0925 -4.9403 9 1 5.4837 0.0061 -4.2584 10 6 4.7711 -0.3609 -6.2368 11 7 3.7565 -0.2562 -7.0669 12 14 6.3755 -1.1238 -6.8142 13 1 6.3442 -2.5880 -6.5684 14 1 6.5500 -0.8693 -8.2668 15 1 7.5078 -0.5204 -6.0665 16 7 2.7123 3.3115 -0.6479 17 7 2.7011 3.3208 0.6374 18 6 2.2800 2.1624 1.0878 19 7 2.1350 1.7989 2.4172 20 6 3.4209 1.8651 3.1243 21 6 1.1244 2.6312 3.0834 22 6 0.8163 2.0565 4.4419 23 7 1.4242 2.3441 5.5677 24 6 0.8169 1.5984 6.5078 25 6 1.1503 1.5708 7.9773 26 7 -0.1070 0.9026 5.9157 27 8 -0.1239 1.1510 4.7285 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.3682 1.0202 -2.6358 34 1 1.9493 2.6248 -3.1417 35 1 4.2931 1.8503 -2.9065 36 1 3.7121 0.2456 -2.4007 37 1 2.5508 -0.0202 -4.5750 38 1 3.1316 1.5844 -5.0815 39 1 3.8414 -0.5748 -7.9792 40 1 3.3144 1.4215 4.1143 41 1 4.1748 1.3166 2.5597 42 1 3.7277 2.9063 3.2238 43 1 1.5063 3.6459 3.1961 44 1 0.2154 2.6499 2.4821 45 1 1.9068 0.8086 8.1639 46 1 1.5334 2.5449 8.2812 47 1 0.2519 1.3390 8.5494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520798796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:51 Heat of formation + Delta-G solvation = 126.213008 kcal Electronic energy + Delta-G solvation = -28473.838611 eV Core-core repulsion = 24502.869296 eV Total energy + Delta-G solvation = -3970.969314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.71407 -44.12453 -39.11589 -37.12918 -36.99108 -36.26469 -34.51954 -34.07733 -31.57804 -31.32561 -30.30213 -29.28825 -28.80114 -26.65651 -25.61929 -24.84190 -24.65018 -22.80528 -22.33147 -21.66833 -21.46927 -19.39806 -18.62465 -18.50559 -18.14705 -17.62074 -17.20437 -16.56922 -16.46850 -16.04168 -15.72433 -15.43685 -15.18559 -14.85950 -14.57768 -14.47559 -14.24193 -14.14047 -13.82623 -13.73274 -13.51989 -13.38073 -13.27737 -13.11290 -12.94820 -12.67992 -12.60809 -12.54899 -12.48404 -12.41320 -12.28933 -12.18238 -11.77404 -11.48548 -11.40665 -11.24519 -11.16091 -11.06466 -10.51817 -10.20645 -10.05980 -8.17677 -6.27233 -0.10432 0.59907 0.96325 1.25395 1.41218 1.42507 1.53075 1.61617 1.69825 2.41967 2.43245 2.67219 3.00856 3.16040 3.31201 3.59912 3.68656 3.87352 3.93079 3.99377 4.07626 4.22064 4.27380 4.35520 4.38062 4.44683 4.46777 4.48217 4.58089 4.60054 4.65107 4.66598 4.78522 4.82851 4.86811 5.03739 5.07631 5.08083 5.14696 5.19202 5.21282 5.24415 5.42007 5.54595 5.77502 5.88466 6.05569 6.28219 6.88804 7.04178 7.41389 7.60889 8.93471 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.002053 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.104927 B =13638.349341 C =13689.348466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.453 5.453 4 C 0.208 3.792 5 C -0.026 4.026 6 C -0.085 4.085 7 C 0.027 3.973 8 C -0.543 4.543 9 H 0.054 0.946 10 C 0.004 3.996 11 N -0.928 5.928 12 Si 0.958 3.042 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.269 1.269 16 N -0.323 5.323 17 N -0.330 5.330 18 C 0.338 3.662 19 N -0.453 5.453 20 C 0.039 3.961 21 C 0.161 3.839 22 C 0.200 3.800 23 N -0.485 5.485 24 C 0.165 3.835 25 C -0.064 4.064 26 N -0.404 5.404 27 O 0.080 5.920 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.007 0.993 38 H -0.003 1.003 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.108 0.892 44 H 0.128 0.872 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 0.982 28.078 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.145 5.145 4 C -0.060 4.060 5 C -0.065 4.065 6 C -0.124 4.124 7 C -0.010 4.010 8 C -0.581 4.581 9 H 0.072 0.928 10 C -0.194 4.194 11 N -0.568 5.568 12 Si 0.783 3.217 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.193 1.193 16 N -0.164 5.164 17 N -0.175 5.175 18 C -0.019 4.019 19 N -0.180 5.180 20 C -0.108 4.108 21 C 0.032 3.968 22 C -0.021 4.021 23 N -0.220 5.220 24 C -0.107 4.107 25 C -0.122 4.122 26 N -0.114 5.114 27 O 0.024 5.976 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.016 0.984 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.126 0.874 44 H 0.146 0.854 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.227 1.478 28.645 30.131 hybrid contribution 0.641 -0.849 -0.890 1.387 sum -8.586 0.629 27.755 29.060 Atomic orbital electron populations 1.22099 0.92114 1.04793 1.02768 1.22230 0.97182 0.76913 1.06105 1.46601 1.48296 1.14645 1.04929 1.25123 1.00213 0.88191 0.92501 1.20181 0.99886 1.02617 0.83857 1.21352 0.95092 0.98774 0.97213 1.18987 0.95712 0.95150 0.91187 1.21660 0.99972 1.39620 0.96852 0.92776 1.25865 0.99926 0.96566 0.97089 1.70069 1.32528 1.48088 1.06115 0.85559 0.79823 0.78945 0.77395 1.19632 1.20805 1.19342 1.74025 1.20062 1.19293 1.03006 1.74487 1.20103 1.18924 1.03952 1.21994 1.03732 0.88129 0.88035 1.58486 1.10977 1.53056 0.95476 1.22493 0.87276 1.02423 0.98637 1.20539 0.97398 0.94600 0.84243 1.28355 0.86762 0.89309 0.97708 1.71971 1.26459 1.24944 0.98646 1.26620 0.90814 0.91703 1.01581 1.20368 1.04343 1.05947 0.81518 1.74672 1.23080 1.22979 0.90649 1.85294 1.46588 1.45976 1.19758 0.88150 0.91643 0.92365 0.88015 0.86953 0.87984 0.88594 0.93981 0.92851 0.97471 0.98418 0.92787 0.89303 0.91020 0.92890 0.87441 0.85353 0.87899 0.87805 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.24 71.98 0.74 -1.49 16 2 C 0.10 1.71 6.62 86.38 0.57 2.28 16 3 N -0.45 -11.11 2.81 -514.84 -1.45 -12.56 16 4 C 0.21 6.34 7.32 137.64 1.01 7.35 16 5 C -0.03 -0.80 5.41 29.85 0.16 -0.64 16 6 C -0.09 -3.32 5.14 30.59 0.16 -3.16 16 7 C 0.03 1.33 4.97 29.85 0.15 1.47 16 8 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 9 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 10 C 0.00 0.21 5.46 84.65 0.46 0.67 16 11 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 12 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 N -0.32 -11.35 12.18 -49.54 -0.60 -11.95 16 17 N -0.33 -10.36 12.19 -58.00 -0.71 -11.07 16 18 C 0.34 8.38 6.36 260.11 1.66 10.04 16 19 N -0.45 -8.47 4.77 -735.30 -3.51 -11.98 16 20 C 0.04 0.69 9.23 127.69 1.18 1.87 16 21 C 0.16 2.47 5.52 85.55 0.47 2.94 16 22 C 0.20 3.36 7.14 88.38 0.63 3.99 16 23 N -0.48 -8.74 11.00 -303.21 -3.33 -12.08 16 24 C 0.17 2.77 8.22 138.47 1.14 3.91 16 25 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 26 N -0.40 -7.98 12.16 -60.34 -0.73 -8.72 16 27 O 0.08 1.50 11.31 74.83 0.85 2.35 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.10 1.86 7.86 -2.39 -0.02 1.84 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 2.69 7.92 -2.39 -0.02 2.67 16 34 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 39 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 40 H 0.09 1.45 7.03 -2.39 -0.02 1.43 16 41 H 0.07 1.37 8.06 -2.39 -0.02 1.35 16 42 H 0.05 1.01 8.07 -2.39 -0.02 0.99 16 43 H 0.11 1.67 8.07 -2.39 -0.02 1.65 16 44 H 0.13 1.63 8.05 -2.38 -0.02 1.61 16 45 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -71.13 400.62 3.09 -68.04 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.96 Total: 7.19 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 9.30 Total: -0.42 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -10.05 Total: -122.81 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.85 Total: 2.35 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -71.13 3.09 -68.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520798796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.250 kcal (2) G-P(sol) polarization free energy of solvation -71.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds