Wall clock time and date at job start Tue Mar 31 2020 17:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47001 * 2 1 4 4 C 1.52995 * 109.47227 * 119.99601 * 2 1 3 5 5 N 1.46503 * 109.47353 * 175.00361 * 4 2 1 6 6 C 1.46497 * 119.99701 * 90.00426 * 5 4 2 7 7 C 1.36932 * 119.99812 * 270.00125 * 5 4 2 8 8 H 1.07999 * 120.00100 * 20.75902 * 7 5 4 9 9 C 1.38816 * 120.00175 * 200.76045 * 7 5 4 10 10 N 1.31616 * 119.99619 * 6.11590 * 9 7 5 11 11 Si 1.86795 * 120.00168 * 186.12132 * 9 7 5 12 12 H 1.48503 * 109.47222 * 59.99790 * 11 9 7 13 13 H 1.48502 * 109.47113 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47210 * 299.99758 * 11 9 7 15 15 N 1.46491 * 109.47719 * 240.00028 * 2 1 3 16 16 C 1.34784 * 120.00019 * 84.99606 * 15 2 1 17 17 O 1.21277 * 119.99693 * 354.19696 * 16 15 2 18 18 C 1.50700 * 119.99693 * 174.19806 * 16 15 2 19 19 C 1.50697 * 112.85328 * 58.91641 * 18 16 15 20 20 C 1.38250 * 119.97409 * 64.94653 * 19 18 16 21 21 C 1.38194 * 120.02388 * 179.76977 * 20 19 18 22 22 C 1.38454 * 119.97577 * 0.50723 * 21 20 19 23 23 F 1.35100 * 120.02826 * 179.76511 * 22 21 20 24 24 C 1.38457 * 119.95163 * 359.75150 * 22 21 20 25 25 C 1.38199 * 119.97107 * 359.97438 * 24 22 21 26 26 C 1.53775 * 113.61425 * 287.71509 * 18 16 15 27 27 C 1.54053 * 86.98964 * 270.83965 * 26 18 16 28 28 C 1.53781 * 87.07336 * 334.57036 * 27 26 18 29 29 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47646 * 300.00318 * 1 2 3 31 31 H 1.09008 * 109.47108 * 60.00430 * 1 2 3 32 32 H 1.09000 * 109.47386 * 295.00738 * 4 2 1 33 33 H 1.09003 * 109.47007 * 55.00231 * 4 2 1 34 34 H 1.09003 * 109.47332 * 95.84696 * 6 5 4 35 35 H 1.09002 * 109.46684 * 215.84085 * 6 5 4 36 36 H 1.08996 * 109.47519 * 335.84414 * 6 5 4 37 37 H 0.97000 * 120.00151 * 180.02562 * 10 9 7 38 38 H 0.96999 * 120.00190 * 264.72669 * 15 2 1 39 39 H 1.08001 * 119.98757 * 0.02641 * 20 19 18 40 40 H 1.08006 * 120.01356 * 180.25693 * 21 20 19 41 41 H 1.07999 * 120.01787 * 180.02562 * 24 22 21 42 42 H 1.07998 * 119.98840 * 180.02562 * 25 24 22 43 43 H 1.08998 * 113.61794 * 25.44172 * 26 18 16 44 44 H 1.09009 * 113.61664 * 156.34037 * 26 18 16 45 45 H 1.08997 * 113.62133 * 220.01797 * 27 26 18 46 46 H 1.09001 * 113.68282 * 89.12629 * 27 26 18 47 47 H 1.09002 * 113.61254 * 270.87121 * 28 27 26 48 48 H 1.09002 * 113.68897 * 139.98893 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 3.5000 -0.8262 1.1906 6 6 4.3342 0.2343 1.7614 7 6 4.0850 -1.9157 0.6024 8 1 3.5245 -2.5172 -0.0978 9 6 5.3984 -2.2469 0.9062 10 7 6.0422 -1.5890 1.8468 11 14 6.2519 -3.6263 -0.0201 12 1 6.2898 -3.3006 -1.4685 13 1 7.6385 -3.7803 0.4886 14 1 5.5061 -4.8944 0.1827 15 7 2.0184 -0.6905 -1.1961 16 6 2.1471 -0.0182 -2.3571 17 8 1.7606 1.1284 -2.4398 18 6 2.7713 -0.6912 -3.5523 19 6 2.0345 -1.9363 -3.9739 20 6 0.7400 -1.8449 -4.4505 21 6 0.0651 -2.9855 -4.8419 22 6 0.6820 -4.2213 -4.7467 23 9 0.0215 -5.3376 -5.1246 24 6 1.9766 -4.3123 -4.2643 25 6 2.6517 -3.1697 -3.8788 26 6 4.2910 -0.8882 -3.4244 27 6 4.4436 0.5056 -4.0626 28 6 3.0706 0.2707 -4.7142 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.7515 -0.1582 2.1370 33 1 1.6054 -1.7197 1.2952 34 1 4.6283 -0.0404 2.7744 35 1 5.2252 0.3657 1.1474 36 1 3.7698 1.1664 1.7871 37 1 6.9601 -1.8201 2.0589 38 1 2.2529 -1.6307 -1.1515 39 1 0.2575 -0.8812 -4.5208 40 1 -0.9448 -2.9134 -5.2180 41 1 2.4591 -5.2757 -4.1900 42 1 3.6616 -3.2403 -3.5028 43 1 4.6396 -0.9382 -2.3928 44 1 4.6802 -1.6967 -4.0433 45 1 5.2619 0.5704 -4.7796 46 1 4.4496 1.3204 -3.3386 47 1 3.1266 -0.2215 -5.6852 48 1 2.4335 1.1551 -4.7242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569131707.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:51 Heat of formation + Delta-G solvation = -13.885376 kcal Electronic energy + Delta-G solvation = -30606.672784 eV Core-core repulsion = 26577.415636 eV Total energy + Delta-G solvation = -4029.257149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.95338 -40.85209 -38.66149 -37.33172 -36.08149 -34.04724 -31.55955 -31.25898 -30.80844 -29.98200 -26.22806 -25.88382 -25.70606 -25.57130 -22.97308 -22.38300 -21.77103 -21.11491 -19.92003 -18.84872 -17.82133 -17.11393 -16.56257 -16.26821 -15.77257 -15.64913 -15.60743 -15.07575 -14.68682 -14.43860 -13.99567 -13.76629 -13.63697 -13.45545 -13.35890 -12.96067 -12.91738 -12.72606 -12.41061 -12.29601 -12.03026 -11.89728 -11.65033 -11.59796 -11.13561 -11.06114 -10.90515 -10.87443 -10.74669 -10.43604 -10.39048 -10.28727 -10.11076 -10.06327 -9.91788 -9.43536 -9.18353 -8.60983 -8.53807 -8.40985 -6.81410 -5.76702 -3.23098 1.03611 1.15770 3.04085 3.28788 3.33861 3.37620 3.44874 3.70943 4.18308 4.40687 4.50674 4.65097 4.74784 4.79224 4.82467 4.99858 5.08431 5.23320 5.32495 5.35927 5.43227 5.54993 5.64103 5.76290 5.81770 5.84538 5.90311 5.92973 5.95291 6.04521 6.11057 6.13254 6.14970 6.19830 6.25321 6.33748 6.43822 6.46410 6.48156 6.55389 6.76178 6.80100 6.81707 7.13000 7.43282 7.62807 7.80017 8.13170 8.32459 8.74667 9.18286 9.80848 10.30437 11.27107 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.005056 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.875548 B = 5536.640896 C = 6299.688362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.601 5.601 6 C 0.168 3.832 7 C -0.247 4.247 8 H 0.064 0.936 9 C 0.004 3.996 10 N -0.908 5.908 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.688 5.688 16 C 0.545 3.455 17 O -0.553 6.553 18 C -0.069 4.069 19 C -0.071 4.071 20 C -0.080 4.080 21 C -0.152 4.152 22 C 0.092 3.908 23 F -0.143 7.143 24 C -0.150 4.150 25 C -0.082 4.082 26 C -0.129 4.129 27 C -0.137 4.137 28 C -0.111 4.111 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.027 0.973 35 H 0.048 0.952 36 H -0.008 1.008 37 H 0.253 0.747 38 H 0.403 0.597 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 -0.822 -12.008 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.323 5.323 6 C 0.023 3.977 7 C -0.377 4.377 8 H 0.082 0.918 9 C -0.194 4.194 10 N -0.553 5.553 11 Si 0.726 3.274 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.210 1.210 15 N -0.337 5.337 16 C 0.330 3.670 17 O -0.432 6.432 18 C -0.072 4.072 19 C -0.071 4.071 20 C -0.098 4.098 21 C -0.171 4.171 22 C 0.073 3.927 23 F -0.122 7.122 24 C -0.168 4.168 25 C -0.100 4.100 26 C -0.166 4.166 27 C -0.175 4.175 28 C -0.148 4.148 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.010 0.990 37 H 0.063 0.937 38 H 0.239 0.761 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.389 -0.073 -11.945 14.597 hybrid contribution 0.554 -1.545 -0.452 1.703 sum -7.835 -1.618 -12.397 14.755 Atomic orbital electron populations 1.22118 0.96580 1.01396 1.01643 1.21884 0.92275 0.98090 0.86678 0.90631 1.21059 0.86137 0.98227 0.93317 1.43838 0.98805 1.21430 1.68260 1.20815 0.92819 0.85855 0.98187 1.18965 0.95985 1.04236 1.18466 0.91811 1.24992 0.98235 0.98526 0.97685 1.70059 1.11412 1.42202 1.31634 0.86465 0.79059 0.82349 0.79491 1.20763 1.21651 1.20950 1.45857 1.64846 1.14362 1.08654 1.19513 0.78027 0.85965 0.83537 1.90623 1.50481 1.18025 1.84081 1.20949 0.96264 0.93954 0.96009 1.19559 0.94279 0.93809 0.99489 1.20869 0.93736 0.98244 0.96916 1.21074 1.01153 0.91140 1.03739 1.17730 0.91548 0.82492 1.00960 1.91485 1.80721 1.50859 1.89147 1.21151 0.93537 1.00269 1.01887 1.21090 1.00660 0.90756 0.97482 1.23131 0.91735 0.97969 1.03786 1.22833 0.96937 0.97649 1.00063 1.22833 0.97676 0.98707 0.95600 0.92975 0.92171 0.92804 0.92982 0.93107 0.95460 0.93326 0.98958 0.93693 0.76070 0.85091 0.84885 0.84638 0.84251 0.88871 0.89261 0.91265 0.89704 0.89766 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 37.16 0.35 -1.97 16 2 C 0.12 2.06 2.84 -67.94 -0.19 1.87 16 3 H 0.08 1.49 7.67 -51.93 -0.40 1.09 16 4 C 0.14 2.67 5.29 -4.04 -0.02 2.65 16 5 N -0.60 -13.91 2.82 -181.12 -0.51 -14.43 16 6 C 0.17 4.02 8.95 59.85 0.54 4.56 16 7 C -0.25 -6.05 8.87 -15.06 -0.13 -6.18 16 8 H 0.06 1.48 6.23 -52.49 -0.33 1.15 16 9 C 0.00 0.10 5.25 -17.43 -0.09 0.01 16 10 N -0.91 -25.15 10.23 55.49 0.57 -24.59 16 11 Si 0.90 20.20 29.56 -169.99 -5.02 15.18 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 N -0.69 -11.96 4.45 -53.81 -0.24 -12.20 16 16 C 0.54 9.40 6.31 -10.98 -0.07 9.33 16 17 O -0.55 -10.92 15.54 5.56 0.09 -10.83 16 18 C -0.07 -0.98 0.94 -156.00 -0.15 -1.13 16 19 C -0.07 -0.92 4.73 -104.62 -0.49 -1.42 16 20 C -0.08 -0.96 9.46 -39.59 -0.37 -1.34 16 21 C -0.15 -1.73 10.03 -39.52 -0.40 -2.13 16 22 C 0.09 1.12 7.30 -39.42 -0.29 0.83 16 23 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 24 C -0.15 -1.79 10.03 -39.51 -0.40 -2.19 16 25 C -0.08 -1.03 9.05 -39.59 -0.36 -1.39 16 26 C -0.13 -1.87 6.34 -25.78 -0.16 -2.03 16 27 C -0.14 -1.88 7.81 -25.78 -0.20 -2.08 16 28 C -0.11 -1.43 6.95 -25.92 -0.18 -1.61 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.83 8.06 -51.92 -0.42 0.41 16 32 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.03 0.70 7.41 -51.93 -0.38 0.32 16 35 H 0.05 1.27 7.03 -51.93 -0.36 0.90 16 36 H -0.01 -0.18 8.03 -51.93 -0.42 -0.59 16 37 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.40 7.09 6.40 -40.82 -0.26 6.83 16 39 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.14 1.73 6.38 -52.49 -0.33 1.39 16 43 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 44 H 0.09 1.14 6.76 -51.92 -0.35 0.78 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 48 H 0.08 1.16 7.35 -51.93 -0.38 0.77 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -28.44 389.47 -9.24 -37.68 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.41 Total: 9.30 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.62 Total: -4.21 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.18 Total: -51.21 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.44 -9.24 -37.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569131707.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.797 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds