Wall clock time and date at job start Tue Mar 31 2020 17:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47001 * 2 1 4 4 C 1.52995 * 109.47227 * 119.99601 * 2 1 3 5 5 N 1.46503 * 109.47353 * 175.00361 * 4 2 1 6 6 C 1.46497 * 119.99701 * 90.00426 * 5 4 2 7 7 C 1.36932 * 119.99812 * 270.00125 * 5 4 2 8 8 H 1.07999 * 120.00100 * 20.75902 * 7 5 4 9 9 C 1.38816 * 120.00175 * 200.76045 * 7 5 4 10 10 N 1.31616 * 119.99619 * 6.11590 * 9 7 5 11 11 Si 1.86795 * 120.00168 * 186.12132 * 9 7 5 12 12 H 1.48503 * 109.47222 * 59.99790 * 11 9 7 13 13 H 1.48502 * 109.47113 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47210 * 299.99758 * 11 9 7 15 15 N 1.46491 * 109.47719 * 240.00028 * 2 1 3 16 16 C 1.34784 * 120.00019 * 84.99606 * 15 2 1 17 17 O 1.21277 * 119.99693 * 354.19696 * 16 15 2 18 18 C 1.50700 * 119.99693 * 174.19806 * 16 15 2 19 19 C 1.50697 * 112.85328 * 58.91641 * 18 16 15 20 20 C 1.38250 * 119.97409 * 64.94653 * 19 18 16 21 21 C 1.38194 * 120.02388 * 179.76977 * 20 19 18 22 22 C 1.38454 * 119.97577 * 0.50723 * 21 20 19 23 23 F 1.35100 * 120.02826 * 179.76511 * 22 21 20 24 24 C 1.38457 * 119.95163 * 359.75150 * 22 21 20 25 25 C 1.38199 * 119.97107 * 359.97438 * 24 22 21 26 26 C 1.53775 * 113.61425 * 287.71509 * 18 16 15 27 27 C 1.54053 * 86.98964 * 270.83965 * 26 18 16 28 28 C 1.53781 * 87.07336 * 334.57036 * 27 26 18 29 29 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47646 * 300.00318 * 1 2 3 31 31 H 1.09008 * 109.47108 * 60.00430 * 1 2 3 32 32 H 1.09000 * 109.47386 * 295.00738 * 4 2 1 33 33 H 1.09003 * 109.47007 * 55.00231 * 4 2 1 34 34 H 1.09003 * 109.47332 * 95.84696 * 6 5 4 35 35 H 1.09002 * 109.46684 * 215.84085 * 6 5 4 36 36 H 1.08996 * 109.47519 * 335.84414 * 6 5 4 37 37 H 0.97000 * 120.00151 * 180.02562 * 10 9 7 38 38 H 0.96999 * 120.00190 * 264.72669 * 15 2 1 39 39 H 1.08001 * 119.98757 * 0.02641 * 20 19 18 40 40 H 1.08006 * 120.01356 * 180.25693 * 21 20 19 41 41 H 1.07999 * 120.01787 * 180.02562 * 24 22 21 42 42 H 1.07998 * 119.98840 * 180.02562 * 25 24 22 43 43 H 1.08998 * 113.61794 * 25.44172 * 26 18 16 44 44 H 1.09009 * 113.61664 * 156.34037 * 26 18 16 45 45 H 1.08997 * 113.62133 * 220.01797 * 27 26 18 46 46 H 1.09001 * 113.68282 * 89.12629 * 27 26 18 47 47 H 1.09002 * 113.61254 * 270.87121 * 28 27 26 48 48 H 1.09002 * 113.68897 * 139.98893 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 3.5000 -0.8262 1.1906 6 6 4.3342 0.2343 1.7614 7 6 4.0850 -1.9157 0.6024 8 1 3.5245 -2.5172 -0.0978 9 6 5.3984 -2.2469 0.9062 10 7 6.0422 -1.5890 1.8468 11 14 6.2519 -3.6263 -0.0201 12 1 6.2898 -3.3006 -1.4685 13 1 7.6385 -3.7803 0.4886 14 1 5.5061 -4.8944 0.1827 15 7 2.0184 -0.6905 -1.1961 16 6 2.1471 -0.0182 -2.3571 17 8 1.7606 1.1284 -2.4398 18 6 2.7713 -0.6912 -3.5523 19 6 2.0345 -1.9363 -3.9739 20 6 0.7400 -1.8449 -4.4505 21 6 0.0651 -2.9855 -4.8419 22 6 0.6820 -4.2213 -4.7467 23 9 0.0215 -5.3376 -5.1246 24 6 1.9766 -4.3123 -4.2643 25 6 2.6517 -3.1697 -3.8788 26 6 4.2910 -0.8882 -3.4244 27 6 4.4436 0.5056 -4.0626 28 6 3.0706 0.2707 -4.7142 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.7515 -0.1582 2.1370 33 1 1.6054 -1.7197 1.2952 34 1 4.6283 -0.0404 2.7744 35 1 5.2252 0.3657 1.1474 36 1 3.7698 1.1664 1.7871 37 1 6.9601 -1.8201 2.0589 38 1 2.2529 -1.6307 -1.1515 39 1 0.2575 -0.8812 -4.5208 40 1 -0.9448 -2.9134 -5.2180 41 1 2.4591 -5.2757 -4.1900 42 1 3.6616 -3.2403 -3.5028 43 1 4.6396 -0.9382 -2.3928 44 1 4.6802 -1.6967 -4.0433 45 1 5.2619 0.5704 -4.7796 46 1 4.4496 1.3204 -3.3386 47 1 3.1266 -0.2215 -5.6852 48 1 2.4335 1.1551 -4.7242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569131707.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:50 Heat of formation + Delta-G solvation = -27.353826 kcal Electronic energy + Delta-G solvation = -30607.256820 eV Core-core repulsion = 26577.415636 eV Total energy + Delta-G solvation = -4029.841185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.89489 -42.03327 -39.82479 -38.59161 -37.62291 -35.70213 -33.18794 -32.18294 -32.07756 -31.32936 -28.05512 -27.36322 -27.02682 -26.72605 -24.04140 -23.66115 -23.02672 -22.49169 -21.39439 -20.15532 -18.77825 -18.63933 -18.00010 -17.26122 -17.12783 -16.93953 -16.80527 -16.57734 -15.84629 -15.64012 -15.50315 -15.23635 -14.87820 -14.58221 -14.54158 -14.44535 -14.33400 -13.79697 -13.68823 -13.51001 -13.42781 -13.13894 -13.02419 -12.81975 -12.69174 -12.61383 -12.59406 -12.14325 -12.05532 -12.03527 -11.95899 -11.79313 -11.76057 -11.45343 -11.24885 -10.76739 -10.54766 -10.08948 -9.87726 -9.51822 -8.73466 -7.73597 -5.21198 0.08287 0.25042 1.50523 1.52220 1.57813 1.69183 2.32418 2.55350 2.58453 3.25861 3.41634 3.45292 3.58217 3.65423 3.70526 3.80182 3.85209 3.95231 3.96147 4.12718 4.30959 4.40508 4.42059 4.49202 4.53219 4.75183 4.75498 4.81878 4.87203 4.87670 4.95113 4.97584 4.99873 5.03216 5.10311 5.12930 5.13923 5.16594 5.25467 5.33840 5.44625 5.47151 5.52003 5.63376 5.73642 5.79443 5.88208 6.36530 6.72882 7.20334 7.37373 7.91898 8.38060 9.29759 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.005056 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.875548 B = 5536.640896 C = 6299.688362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.125 3.875 3 H 0.050 0.950 4 C 0.142 3.858 5 N -0.614 5.614 6 C 0.185 3.815 7 C -0.236 4.236 8 H 0.080 0.920 9 C -0.055 4.055 10 N -0.945 5.945 11 Si 0.952 3.048 12 H -0.261 1.261 13 H -0.308 1.308 14 H -0.275 1.275 15 N -0.690 5.690 16 C 0.541 3.459 17 O -0.582 6.582 18 C -0.065 4.065 19 C -0.077 4.077 20 C -0.082 4.082 21 C -0.146 4.146 22 C 0.084 3.916 23 F -0.147 7.147 24 C -0.149 4.149 25 C -0.087 4.087 26 C -0.126 4.126 27 C -0.138 4.138 28 C -0.099 4.099 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.003 0.997 35 H 0.018 0.982 36 H 0.013 0.987 37 H 0.242 0.758 38 H 0.403 0.597 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.057 0.943 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.111 0.889 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -2.141 -13.888 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.068 0.932 4 C 0.015 3.985 5 N -0.337 5.337 6 C 0.040 3.960 7 C -0.366 4.366 8 H 0.097 0.903 9 C -0.249 4.249 10 N -0.593 5.593 11 Si 0.780 3.220 12 H -0.186 1.186 13 H -0.235 1.235 14 H -0.201 1.201 15 N -0.338 5.338 16 C 0.328 3.672 17 O -0.463 6.463 18 C -0.068 4.068 19 C -0.077 4.077 20 C -0.100 4.100 21 C -0.165 4.165 22 C 0.065 3.935 23 F -0.125 7.125 24 C -0.168 4.168 25 C -0.105 4.105 26 C -0.164 4.164 27 C -0.176 4.176 28 C -0.137 4.137 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.021 0.979 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.239 0.761 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.168 0.832 42 H 0.158 0.842 43 H 0.076 0.924 44 H 0.131 0.869 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.129 0.871 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.974 -1.400 -13.847 17.122 hybrid contribution 0.950 -1.096 0.155 1.459 sum -9.024 -2.496 -13.692 16.587 Atomic orbital electron populations 1.22002 0.93911 1.02406 1.02215 1.21691 0.94214 0.96288 0.86070 0.93161 1.21220 0.83567 0.99150 0.94576 1.44053 1.00609 1.20942 1.68112 1.20483 0.92288 0.87114 0.96162 1.19345 0.95885 1.03737 1.17630 0.90276 1.25716 0.99312 1.00988 0.98912 1.70256 1.11084 1.44168 1.33780 0.85559 0.76994 0.80044 0.79387 1.18633 1.23503 1.20129 1.45890 1.64873 1.14267 1.08809 1.20011 0.77420 0.85635 0.84181 1.90604 1.51754 1.19306 1.84657 1.20849 0.95952 0.94831 0.95200 1.19463 0.94700 0.93229 1.00321 1.20917 0.93435 0.98718 0.96914 1.21260 1.01928 0.90477 1.02797 1.17882 0.91782 0.82670 1.01200 1.91481 1.80786 1.51054 1.89210 1.21312 0.93488 1.00734 1.01228 1.21107 1.00848 0.90732 0.97800 1.23125 0.91904 0.99237 1.02130 1.22799 0.98512 0.96250 0.99993 1.22824 0.96527 0.98085 0.96220 0.91672 0.90278 0.93569 0.91651 0.92190 0.97884 0.96338 0.96810 0.94815 0.76123 0.84784 0.82881 0.83167 0.84153 0.92398 0.86914 0.88918 0.92435 0.87107 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.48 71.98 0.68 -3.30 16 2 C 0.12 4.24 2.84 44.99 0.13 4.36 16 3 H 0.05 1.98 7.67 -2.38 -0.02 1.96 16 4 C 0.14 5.20 5.29 86.38 0.46 5.65 16 5 N -0.61 -28.44 2.82 -726.94 -2.05 -30.50 16 6 C 0.18 9.07 8.95 127.77 1.14 10.21 16 7 C -0.24 -11.49 8.87 84.04 0.75 -10.74 16 8 H 0.08 3.55 6.23 -2.91 -0.02 3.53 16 9 C -0.06 -2.89 5.25 84.86 0.45 -2.44 16 10 N -0.94 -53.97 10.23 21.65 0.22 -53.75 16 11 Si 0.95 41.45 29.56 68.60 2.03 43.48 16 12 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 13 H -0.31 -14.22 7.11 99.48 0.71 -13.52 16 14 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 15 N -0.69 -23.45 4.45 -442.55 -1.97 -25.42 16 16 C 0.54 18.43 6.31 87.66 0.55 18.99 16 17 O -0.58 -23.06 15.54 -3.02 -0.05 -23.11 16 18 C -0.07 -1.78 0.94 -53.15 -0.05 -1.83 16 19 C -0.08 -1.83 4.73 -19.86 -0.09 -1.92 16 20 C -0.08 -1.78 9.46 22.26 0.21 -1.57 16 21 C -0.15 -2.91 10.03 22.31 0.22 -2.68 16 22 C 0.08 1.82 7.30 22.37 0.16 1.98 16 23 F -0.15 -3.33 17.27 44.97 0.78 -2.56 16 24 C -0.15 -3.15 10.03 22.31 0.22 -2.92 16 25 C -0.09 -1.97 9.05 22.26 0.20 -1.77 16 26 C -0.13 -3.53 6.34 31.21 0.20 -3.34 16 27 C -0.14 -3.65 7.81 31.21 0.24 -3.41 16 28 C -0.10 -2.40 6.95 31.12 0.22 -2.19 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.34 8.06 -2.38 -0.02 1.32 16 32 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 33 H 0.06 2.11 8.04 -2.39 -0.02 2.09 16 34 H 0.00 0.15 7.41 -2.39 -0.02 0.14 16 35 H 0.02 0.98 7.03 -2.39 -0.02 0.97 16 36 H 0.01 0.59 8.03 -2.39 -0.02 0.57 16 37 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 38 H 0.40 13.69 6.40 -92.71 -0.59 13.09 16 39 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.14 3.12 6.38 -2.91 -0.02 3.11 16 43 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 44 H 0.11 2.60 6.76 -2.38 -0.02 2.58 16 45 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.11 2.12 8.09 -2.39 -0.02 2.10 16 48 H 0.07 1.93 7.35 -2.39 -0.02 1.91 16 Total: -1.00 -62.24 389.47 5.02 -57.22 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.37 Total: 31.55 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.69 Total: 3.08 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -3.80 Total: -109.66 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -62.24 5.02 -57.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569131707.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.867 kcal (2) G-P(sol) polarization free energy of solvation -62.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds