Wall clock time and date at job start Tue Mar 31 2020 19:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99947 * 2 1 4 4 H 1.48499 * 109.47461 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46846 * 300.00041 * 3 2 1 6 6 H 1.48503 * 109.47176 * 60.00090 * 3 2 1 7 7 C 1.38809 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00325 * 201.24604 * 7 2 1 9 9 N 1.36941 * 119.99979 * 21.25254 * 7 2 1 10 10 C 1.46505 * 119.99700 * 37.18706 * 9 7 2 11 11 C 1.52992 * 109.47343 * 90.00113 * 10 9 7 12 12 C 1.52998 * 117.49785 * 243.62147 * 11 10 9 13 13 C 1.52997 * 117.50100 * 174.99842 * 11 10 9 14 14 C 1.46501 * 120.00015 * 217.18602 * 9 7 2 15 15 C 1.53038 * 109.46161 * 56.03165 * 14 9 7 16 16 C 1.53187 * 109.31462 * 178.61318 * 15 14 9 17 17 N 1.46925 * 108.77615 * 54.63426 * 16 15 14 18 18 C 1.34772 * 120.63383 * 126.36679 * 17 16 15 19 19 O 1.21283 * 120.00071 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.99942 * 0.02849 * 18 17 16 21 21 C 1.53007 * 119.80354 * 250.22925 * 20 18 17 22 22 C 1.53006 * 60.65074 * 247.68595 * 21 20 18 23 23 H 1.09004 * 119.80340 * 112.31174 * 22 21 20 24 24 C 1.54479 * 118.06927 * 269.59257 * 22 21 20 25 25 O 1.44415 * 104.80399 * 86.82566 * 24 22 21 26 26 C 1.46767 * 105.42222 * 319.29512 * 25 24 22 27 27 C 1.46930 * 118.73753 * 306.39212 * 17 16 15 28 28 C 1.53034 * 109.45900 * 295.95955 * 14 9 7 29 29 H 0.96997 * 119.99762 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47076 * 329.99404 * 10 9 7 31 31 H 1.09005 * 109.46944 * 210.00257 * 10 9 7 32 32 H 1.09001 * 115.55192 * 29.32904 * 11 10 9 33 33 H 1.08997 * 117.49779 * 359.97438 * 12 11 10 34 34 H 1.09003 * 117.50066 * 145.02570 * 12 11 10 35 35 H 1.08999 * 117.50127 * 214.98136 * 13 11 10 36 36 H 1.09000 * 117.49842 * 359.97438 * 13 11 10 37 37 H 1.08999 * 109.45493 * 175.98793 * 14 9 7 38 38 H 1.09006 * 109.49705 * 298.56440 * 15 14 9 39 39 H 1.09005 * 109.49956 * 58.65454 * 15 14 9 40 40 H 1.08997 * 109.58502 * 294.84409 * 16 15 14 41 41 H 1.09002 * 109.70213 * 174.48896 * 16 15 14 42 42 H 1.09001 * 117.43297 * 355.36112 * 21 20 18 43 43 H 1.09003 * 117.42934 * 140.06650 * 21 20 18 44 44 H 1.08993 * 110.37264 * 205.66597 * 24 22 21 45 45 H 1.09004 * 110.37053 * 327.99626 * 24 22 21 46 46 H 1.09003 * 110.29595 * 282.45755 * 26 25 24 47 47 H 1.09009 * 111.53765 * 159.38356 * 26 25 24 48 48 H 1.09005 * 109.58664 * 293.82193 * 27 17 16 49 49 H 1.09000 * 109.70676 * 173.46165 * 27 17 16 50 50 H 1.09002 * 109.50022 * 301.33780 * 28 14 9 51 51 H 1.09000 * 109.49957 * 61.43800 * 28 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0353 -1.2338 0.3395 9 7 1.3955 -2.3479 -0.4288 10 6 0.4617 -2.2996 -1.5567 11 6 1.2267 -2.5257 -2.8622 12 6 1.2487 -1.3797 -3.8756 13 6 0.4092 -2.6287 -4.1514 14 6 1.6715 -3.6220 0.2397 15 6 1.3689 -3.4898 1.7340 16 6 1.6255 -4.8333 2.4237 17 7 2.9968 -5.2656 2.1217 18 6 3.8497 -5.5874 3.1144 19 8 4.9794 -5.9424 2.8520 20 6 3.3998 -5.5062 4.5503 21 6 3.9638 -4.4158 5.4635 22 6 4.3260 -5.8783 5.7297 23 1 5.3511 -6.2181 5.5818 24 6 3.4175 -6.6911 6.6786 25 8 2.3724 -7.2145 5.8304 26 6 2.0299 -6.1212 4.9131 27 6 3.4209 -5.3399 0.7169 28 6 3.1442 -3.9906 0.0463 29 1 -0.4849 0.8400 0.0004 30 1 -0.0243 -1.3244 -1.5845 31 1 -0.2921 -3.0779 -1.4379 32 1 2.1205 -3.1445 -2.7823 33 1 0.7178 -0.4649 -3.6124 34 1 2.1571 -1.2442 -4.4627 35 1 0.7653 -3.3150 -4.9197 36 1 -0.6737 -2.5359 -4.0693 37 1 1.0425 -4.4014 -0.1905 38 1 2.0149 -2.7277 2.1700 39 1 0.3257 -3.2042 1.8701 40 1 0.9184 -5.5753 2.0529 41 1 1.5065 -4.7217 3.5014 42 1 4.7427 -3.7719 5.0550 43 1 3.2740 -3.9357 6.1577 44 1 3.9788 -7.5057 7.1360 45 1 2.9942 -6.0430 7.4461 46 1 1.4053 -5.3849 5.4190 47 1 1.5312 -6.4917 4.0174 48 1 2.8602 -6.1233 0.2069 49 1 4.4870 -5.5613 0.6660 50 1 3.3646 -4.0617 -1.0188 51 1 3.7735 -3.2239 0.4982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569452583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:16 Heat of formation + Delta-G solvation = 10.679974 kcal Electronic energy + Delta-G solvation = -30492.709278 eV Core-core repulsion = 26587.977667 eV Total energy + Delta-G solvation = -3904.731610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.04409 -39.10481 -37.59334 -36.58344 -34.68129 -34.60794 -32.18142 -30.99265 -30.00849 -28.82009 -26.24090 -25.71327 -25.28954 -23.32313 -22.64379 -21.74114 -21.62458 -21.21573 -19.78818 -19.51478 -18.76857 -17.17720 -16.49729 -16.34138 -15.74442 -15.52903 -15.02468 -14.80313 -14.76001 -14.70357 -14.07719 -13.99177 -13.67487 -13.42190 -13.34471 -13.10231 -12.99764 -12.84860 -12.22474 -12.14363 -11.83056 -11.72302 -11.44371 -11.35442 -11.00594 -10.93291 -10.92504 -10.81342 -10.72658 -10.64918 -10.41849 -10.27579 -10.05528 -10.01324 -9.93460 -9.85055 -9.55305 -9.30908 -9.01455 -8.45954 -8.42203 -6.60650 -5.82132 -3.39269 2.52174 3.00641 3.31870 3.33272 3.41693 3.44489 3.70864 4.17302 4.28078 4.40335 4.43537 4.58241 4.75265 4.77485 5.06495 5.12711 5.15473 5.26466 5.32562 5.40222 5.42884 5.45352 5.48617 5.52591 5.55859 5.65282 5.70014 5.73817 5.77434 5.79321 5.88971 5.99480 6.11032 6.15263 6.22698 6.27330 6.37369 6.41292 6.49220 6.62941 6.69882 6.73764 6.80667 6.88223 6.94137 7.09400 7.16247 7.55980 7.69933 7.81049 8.27264 8.49255 9.16720 9.79077 10.36402 11.17973 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.003367 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.557949 B = 8313.234795 C = 9172.874235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.016 3.984 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.058 0.942 9 N -0.576 5.576 10 C 0.172 3.828 11 C -0.145 4.145 12 C -0.178 4.178 13 C -0.199 4.199 14 C 0.177 3.823 15 C -0.132 4.132 16 C 0.099 3.901 17 N -0.597 5.597 18 C 0.561 3.439 19 O -0.548 6.548 20 C -0.204 4.204 21 C -0.108 4.108 22 C -0.159 4.159 23 H 0.130 0.870 24 C 0.074 3.926 25 O -0.376 6.376 26 C 0.081 3.919 27 C 0.114 3.886 28 C -0.140 4.140 29 H 0.253 0.747 30 H 0.099 0.901 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.067 0.933 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -10.241 7.332 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.184 4.184 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.075 0.925 9 N -0.294 5.294 10 C 0.046 3.954 11 C -0.165 4.165 12 C -0.215 4.215 13 C -0.237 4.237 14 C 0.070 3.930 15 C -0.171 4.171 16 C -0.024 4.024 17 N -0.329 5.329 18 C 0.349 3.651 19 O -0.427 6.427 20 C -0.207 4.207 21 C -0.145 4.145 22 C -0.178 4.178 23 H 0.148 0.852 24 C -0.003 4.003 25 O -0.295 6.295 26 C 0.005 3.995 27 C -0.008 4.008 28 C -0.181 4.181 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.124 0.876 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.085 0.915 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.265 -10.508 7.184 12.929 hybrid contribution 0.587 1.298 -0.307 1.457 sum 2.851 -9.210 6.877 11.842 Atomic orbital electron populations 1.69980 1.05448 1.25456 1.52130 1.25071 0.94893 0.98406 1.00006 0.86447 0.79927 0.84449 0.77283 1.20195 1.21471 1.21809 1.18889 0.93837 0.85383 1.39649 0.92454 1.43808 1.51376 1.02714 1.31509 1.20624 0.89951 1.02348 0.82468 1.23357 1.00802 1.00104 0.92259 1.22818 1.01067 0.93369 1.04256 1.22865 0.98121 1.01641 1.01056 1.20329 0.92474 0.89266 0.90981 1.22265 1.02773 0.94328 0.97774 1.22171 0.81687 0.97814 1.00751 1.48008 1.13192 1.65290 1.06395 1.19019 0.84579 0.76579 0.84931 1.90664 1.19705 1.48339 1.83947 1.23172 0.97444 1.08655 0.91478 1.23184 1.02052 0.90754 0.98511 1.24343 1.00440 0.97575 0.95413 0.85183 1.22918 0.87788 0.97585 0.92005 1.89550 1.55214 1.36255 1.48449 1.23610 0.92682 0.89080 0.94137 1.21694 1.01038 0.98484 0.79603 1.22410 1.00656 0.95077 0.99918 0.93726 0.88331 0.95551 0.89413 0.89234 0.90442 0.90338 0.89615 0.93324 0.90930 0.90716 0.91670 0.90055 0.87150 0.87533 0.88320 0.91639 0.90472 0.87556 0.91942 0.89789 0.91459 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 11.43 55.49 0.63 -23.18 16 2 C 0.02 0.42 4.96 -17.43 -0.09 0.33 16 3 Si 0.89 20.84 29.60 -169.99 -5.03 15.81 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.18 8.13 -15.06 -0.12 -6.30 16 8 H 0.06 1.48 7.05 -52.49 -0.37 1.11 16 9 N -0.58 -12.77 2.37 -165.62 -0.39 -13.17 16 10 C 0.17 3.74 5.56 -4.04 -0.02 3.72 16 11 C -0.14 -2.76 6.01 -90.63 -0.54 -3.31 16 12 C -0.18 -3.25 10.18 -26.73 -0.27 -3.53 16 13 C -0.20 -3.26 10.25 -26.73 -0.27 -3.53 16 14 C 0.18 3.27 2.60 -67.89 -0.18 3.09 16 15 C -0.13 -2.27 5.24 -26.62 -0.14 -2.41 16 16 C 0.10 1.33 4.86 -3.71 -0.02 1.31 16 17 N -0.60 -8.94 2.97 -172.77 -0.51 -9.45 16 18 C 0.56 8.87 7.38 -10.99 -0.08 8.79 16 19 O -0.55 -10.39 16.26 5.55 0.09 -10.30 16 20 C -0.20 -2.55 2.06 -154.09 -0.32 -2.86 16 21 C -0.11 -1.13 9.87 -26.72 -0.26 -1.39 16 22 C -0.16 -1.72 6.90 -89.05 -0.61 -2.33 16 23 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 24 C 0.07 0.69 7.45 37.93 0.28 0.98 16 25 O -0.38 -4.57 11.72 -35.23 -0.41 -4.99 16 26 C 0.08 0.89 5.43 37.93 0.21 1.09 16 27 C 0.11 1.74 6.43 -3.71 -0.02 1.72 16 28 C -0.14 -2.42 5.37 -26.61 -0.14 -2.56 16 29 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.10 2.46 5.21 -51.93 -0.27 2.19 16 31 H 0.03 0.55 7.89 -51.93 -0.41 0.14 16 32 H 0.09 1.68 7.93 -51.93 -0.41 1.27 16 33 H 0.09 1.76 8.03 -51.93 -0.42 1.35 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.05 0.86 7.77 -51.93 -0.40 0.46 16 38 H 0.07 1.43 7.63 -51.93 -0.40 1.03 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.08 0.95 4.40 -51.93 -0.23 0.72 16 42 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.70 7.95 -51.93 -0.41 0.29 16 47 H 0.11 1.15 6.25 -51.92 -0.32 0.83 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 1.35 7.01 -51.93 -0.36 0.99 16 50 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 51 H 0.07 1.31 7.20 -51.93 -0.37 0.94 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -29.25 394.47 -10.87 -40.12 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -8.58 Total: 6.40 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.61 Total: -7.20 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.27 Total: -45.79 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.32 Total: -15.28 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.25 -10.87 -40.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569452583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.798 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds