Wall clock time and date at job start Tue Mar 31 2020 19:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99947 * 2 1 4 4 H 1.48499 * 109.47461 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46846 * 300.00041 * 3 2 1 6 6 H 1.48503 * 109.47176 * 60.00090 * 3 2 1 7 7 C 1.38809 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00325 * 201.24604 * 7 2 1 9 9 N 1.36941 * 119.99979 * 21.25254 * 7 2 1 10 10 C 1.46505 * 119.99700 * 37.18706 * 9 7 2 11 11 C 1.52992 * 109.47343 * 90.00113 * 10 9 7 12 12 C 1.52998 * 117.49785 * 243.62147 * 11 10 9 13 13 C 1.52997 * 117.50100 * 174.99842 * 11 10 9 14 14 C 1.46501 * 120.00015 * 217.18602 * 9 7 2 15 15 C 1.53038 * 109.46161 * 56.03165 * 14 9 7 16 16 C 1.53187 * 109.31462 * 178.61318 * 15 14 9 17 17 N 1.46925 * 108.77615 * 54.63426 * 16 15 14 18 18 C 1.34772 * 120.63383 * 126.36679 * 17 16 15 19 19 O 1.21283 * 120.00071 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.99942 * 0.02849 * 18 17 16 21 21 C 1.53007 * 119.80354 * 250.22925 * 20 18 17 22 22 C 1.53006 * 60.65074 * 247.68595 * 21 20 18 23 23 H 1.09004 * 119.80340 * 112.31174 * 22 21 20 24 24 C 1.54479 * 118.06927 * 269.59257 * 22 21 20 25 25 O 1.44415 * 104.80399 * 86.82566 * 24 22 21 26 26 C 1.46767 * 105.42222 * 319.29512 * 25 24 22 27 27 C 1.46930 * 118.73753 * 306.39212 * 17 16 15 28 28 C 1.53034 * 109.45900 * 295.95955 * 14 9 7 29 29 H 0.96997 * 119.99762 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47076 * 329.99404 * 10 9 7 31 31 H 1.09005 * 109.46944 * 210.00257 * 10 9 7 32 32 H 1.09001 * 115.55192 * 29.32904 * 11 10 9 33 33 H 1.08997 * 117.49779 * 359.97438 * 12 11 10 34 34 H 1.09003 * 117.50066 * 145.02570 * 12 11 10 35 35 H 1.08999 * 117.50127 * 214.98136 * 13 11 10 36 36 H 1.09000 * 117.49842 * 359.97438 * 13 11 10 37 37 H 1.08999 * 109.45493 * 175.98793 * 14 9 7 38 38 H 1.09006 * 109.49705 * 298.56440 * 15 14 9 39 39 H 1.09005 * 109.49956 * 58.65454 * 15 14 9 40 40 H 1.08997 * 109.58502 * 294.84409 * 16 15 14 41 41 H 1.09002 * 109.70213 * 174.48896 * 16 15 14 42 42 H 1.09001 * 117.43297 * 355.36112 * 21 20 18 43 43 H 1.09003 * 117.42934 * 140.06650 * 21 20 18 44 44 H 1.08993 * 110.37264 * 205.66597 * 24 22 21 45 45 H 1.09004 * 110.37053 * 327.99626 * 24 22 21 46 46 H 1.09003 * 110.29595 * 282.45755 * 26 25 24 47 47 H 1.09009 * 111.53765 * 159.38356 * 26 25 24 48 48 H 1.09005 * 109.58664 * 293.82193 * 27 17 16 49 49 H 1.09000 * 109.70676 * 173.46165 * 27 17 16 50 50 H 1.09002 * 109.50022 * 301.33780 * 28 14 9 51 51 H 1.09000 * 109.49957 * 61.43800 * 28 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0353 -1.2338 0.3395 9 7 1.3955 -2.3479 -0.4288 10 6 0.4617 -2.2996 -1.5567 11 6 1.2267 -2.5257 -2.8622 12 6 1.2487 -1.3797 -3.8756 13 6 0.4092 -2.6287 -4.1514 14 6 1.6715 -3.6220 0.2397 15 6 1.3689 -3.4898 1.7340 16 6 1.6255 -4.8333 2.4237 17 7 2.9968 -5.2656 2.1217 18 6 3.8497 -5.5874 3.1144 19 8 4.9794 -5.9424 2.8520 20 6 3.3998 -5.5062 4.5503 21 6 3.9638 -4.4158 5.4635 22 6 4.3260 -5.8783 5.7297 23 1 5.3511 -6.2181 5.5818 24 6 3.4175 -6.6911 6.6786 25 8 2.3724 -7.2145 5.8304 26 6 2.0299 -6.1212 4.9131 27 6 3.4209 -5.3399 0.7169 28 6 3.1442 -3.9906 0.0463 29 1 -0.4849 0.8400 0.0004 30 1 -0.0243 -1.3244 -1.5845 31 1 -0.2921 -3.0779 -1.4379 32 1 2.1205 -3.1445 -2.7823 33 1 0.7178 -0.4649 -3.6124 34 1 2.1571 -1.2442 -4.4627 35 1 0.7653 -3.3150 -4.9197 36 1 -0.6737 -2.5359 -4.0693 37 1 1.0425 -4.4014 -0.1905 38 1 2.0149 -2.7277 2.1700 39 1 0.3257 -3.2042 1.8701 40 1 0.9184 -5.5753 2.0529 41 1 1.5065 -4.7217 3.5014 42 1 4.7427 -3.7719 5.0550 43 1 3.2740 -3.9357 6.1577 44 1 3.9788 -7.5057 7.1360 45 1 2.9942 -6.0430 7.4461 46 1 1.4053 -5.3849 5.4190 47 1 1.5312 -6.4917 4.0174 48 1 2.8602 -6.1233 0.2069 49 1 4.4870 -5.5613 0.6660 50 1 3.3646 -4.0617 -1.0188 51 1 3.7735 -3.2239 0.4982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569452583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:14 Heat of formation + Delta-G solvation = -4.633825 kcal Electronic energy + Delta-G solvation = -30493.373334 eV Core-core repulsion = 26587.977667 eV Total energy + Delta-G solvation = -3905.395666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.05334 -40.24828 -39.04870 -37.99313 -36.19516 -35.54695 -33.87290 -32.31393 -31.60413 -29.72081 -27.97512 -26.77296 -26.51957 -24.70632 -23.98699 -23.13317 -22.89050 -22.14812 -21.22520 -21.04731 -19.95706 -18.48312 -17.91952 -17.54682 -16.86559 -16.59889 -16.54450 -16.35745 -15.93815 -15.72462 -15.63683 -15.25592 -15.14889 -14.86880 -14.53474 -14.41541 -14.16620 -13.77770 -13.74401 -13.34105 -13.16363 -13.08500 -12.97400 -12.75533 -12.63317 -12.39916 -12.30994 -12.26432 -12.12503 -11.96533 -11.83886 -11.74908 -11.50960 -11.34414 -11.29458 -10.93384 -10.80383 -10.66341 -10.58524 -10.30181 -9.69048 -8.47694 -7.76389 -5.35896 1.37905 1.40875 1.47289 1.53808 1.87851 2.39252 2.51918 2.90877 3.09689 3.31218 3.34316 3.38448 3.41924 3.61003 3.90121 3.95888 3.99471 4.07944 4.15581 4.22988 4.26393 4.31772 4.34859 4.38028 4.47224 4.56619 4.62295 4.66201 4.67438 4.75627 4.77957 4.82783 4.83623 4.84066 4.85454 4.92322 5.07545 5.07891 5.10988 5.18446 5.25006 5.36476 5.38554 5.45309 5.60828 5.61174 5.67830 5.75783 5.94197 6.35531 6.54453 7.05443 7.25674 7.95650 8.46382 9.18770 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.003367 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.557949 B = 8313.234795 C = 9172.874235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.023 4.023 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.043 0.957 9 N -0.587 5.587 10 C 0.175 3.825 11 C -0.160 4.160 12 C -0.188 4.188 13 C -0.166 4.166 14 C 0.173 3.827 15 C -0.121 4.121 16 C 0.108 3.892 17 N -0.598 5.598 18 C 0.554 3.446 19 O -0.589 6.589 20 C -0.225 4.225 21 C -0.097 4.097 22 C -0.154 4.154 23 H 0.118 0.882 24 C 0.075 3.925 25 O -0.396 6.396 26 C 0.084 3.916 27 C 0.120 3.880 28 C -0.125 4.125 29 H 0.248 0.752 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.135 0.865 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 -11.759 7.932 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.221 4.221 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.369 4.369 8 H 0.060 0.940 9 N -0.307 5.307 10 C 0.049 3.951 11 C -0.180 4.180 12 C -0.226 4.226 13 C -0.204 4.204 14 C 0.066 3.934 15 C -0.161 4.161 16 C -0.014 4.014 17 N -0.329 5.329 18 C 0.344 3.656 19 O -0.470 6.470 20 C -0.228 4.228 21 C -0.134 4.134 22 C -0.173 4.173 23 H 0.136 0.864 24 C -0.001 4.001 25 O -0.316 6.316 26 C 0.008 3.992 27 C -0.003 4.003 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.153 0.847 44 H 0.130 0.870 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.124 0.876 48 H 0.105 0.895 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.613 -12.037 7.786 14.426 hybrid contribution 0.845 1.739 -0.522 2.003 sum 2.457 -10.297 7.264 12.839 Atomic orbital electron populations 1.70072 1.06200 1.25395 1.53826 1.25489 0.95377 1.00270 1.00950 0.85742 0.78941 0.82159 0.76783 1.20268 1.21896 1.21966 1.18860 0.93205 0.86603 1.38241 0.93975 1.43966 1.51182 1.03191 1.32318 1.20467 0.90229 1.00678 0.83709 1.23121 1.01487 1.01292 0.92105 1.22816 1.02192 0.93048 1.04497 1.22933 0.98067 1.00061 0.99322 1.20505 0.93295 0.87955 0.91612 1.22075 1.01119 0.95814 0.97055 1.22195 0.81287 0.96021 1.01873 1.48100 1.13724 1.64881 1.06208 1.19636 0.83994 0.75628 0.86385 1.90636 1.21371 1.50188 1.84797 1.23223 0.99145 1.10791 0.89659 1.23280 1.01844 0.90459 0.97819 1.24427 0.99999 0.98007 0.94854 0.86351 1.23109 0.87131 0.98258 0.91643 1.89528 1.55878 1.37142 1.49014 1.23685 0.91779 0.89274 0.94473 1.21603 1.00918 0.97653 0.80112 1.22203 0.99080 0.95373 0.99891 0.94245 0.91586 0.95057 0.89393 0.91407 0.89079 0.87486 0.89101 0.91735 0.93998 0.91957 0.89034 0.87791 0.88440 0.84738 0.86999 0.89146 0.88012 0.87560 0.89454 0.90866 0.91426 0.94631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.00 11.43 21.65 0.25 -49.76 16 2 C -0.02 -1.23 4.96 84.86 0.42 -0.81 16 3 Si 0.93 43.75 29.60 68.60 2.03 45.78 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.24 -12.17 8.13 84.03 0.68 -11.49 16 8 H 0.04 2.27 7.05 -2.91 -0.02 2.25 16 9 N -0.59 -26.35 2.37 -677.89 -1.60 -27.95 16 10 C 0.18 7.62 5.56 86.38 0.48 8.10 16 11 C -0.16 -5.95 6.01 -10.80 -0.06 -6.02 16 12 C -0.19 -6.74 10.18 30.59 0.31 -6.43 16 13 C -0.17 -5.05 10.25 30.59 0.31 -4.74 16 14 C 0.17 6.31 2.60 45.02 0.12 6.43 16 15 C -0.12 -4.11 5.24 30.67 0.16 -3.95 16 16 C 0.11 2.70 4.86 86.36 0.42 3.12 16 17 N -0.60 -17.26 2.97 -818.90 -2.43 -19.70 16 18 C 0.55 17.20 7.38 87.66 0.65 17.84 16 19 O -0.59 -22.56 16.26 -3.04 -0.05 -22.61 16 20 C -0.22 -5.24 2.06 -51.91 -0.11 -5.35 16 21 C -0.10 -1.85 9.87 30.60 0.30 -1.55 16 22 C -0.15 -3.08 6.90 -9.78 -0.07 -3.14 16 23 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 24 C 0.07 1.19 7.45 72.48 0.54 1.73 16 25 O -0.40 -8.57 11.72 -148.98 -1.75 -10.32 16 26 C 0.08 1.60 5.43 72.48 0.39 1.99 16 27 C 0.12 3.55 6.43 86.36 0.56 4.11 16 28 C -0.13 -4.32 5.37 30.67 0.16 -4.15 16 29 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 30 H 0.07 3.37 5.21 -2.39 -0.01 3.36 16 31 H 0.03 1.29 7.89 -2.38 -0.02 1.27 16 32 H 0.09 3.28 7.93 -2.39 -0.02 3.26 16 33 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 34 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.06 2.17 7.77 -2.39 -0.02 2.15 16 38 H 0.04 1.67 7.63 -2.38 -0.02 1.65 16 39 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 41 H 0.10 2.16 4.40 -2.39 -0.01 2.15 16 42 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 1.44 7.95 -2.39 -0.02 1.42 16 47 H 0.11 1.99 6.25 -2.38 -0.01 1.97 16 48 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 49 H 0.07 2.36 7.01 -2.39 -0.02 2.34 16 50 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 51 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 Total: -1.00 -65.39 394.47 2.63 -62.76 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.91 Total: 26.12 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 5.27 Total: -4.32 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -3.79 Total: -97.41 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.80 Total: -32.93 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.39 2.63 -62.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569452583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.127 kcal (2) G-P(sol) polarization free energy of solvation -65.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds