Wall clock time and date at job start Tue Mar 31 2020 18:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36950 * 119.99663 * 2 1 4 4 H 1.07996 * 119.99699 * 202.90847 * 3 2 1 5 5 C 1.38810 * 119.99976 * 22.90892 * 3 2 1 6 6 N 1.31624 * 119.99832 * 12.97831 * 5 3 2 7 7 Si 1.86796 * 119.99868 * 192.97728 * 5 3 2 8 8 H 1.48505 * 109.47084 * 90.00118 * 7 5 3 9 9 H 1.48498 * 109.47241 * 209.99965 * 7 5 3 10 10 H 1.48497 * 109.47203 * 330.00143 * 7 5 3 11 11 C 1.46501 * 120.00713 * 179.97438 * 2 1 3 12 12 C 1.50696 * 109.47248 * 88.13087 * 11 2 1 13 13 C 1.38258 * 120.00000 * 2.56455 * 12 11 2 14 14 C 1.38215 * 119.99924 * 179.97438 * 13 12 11 15 15 C 1.38253 * 120.00279 * 0.02562 * 14 13 12 16 16 C 1.38220 * 119.99692 * 359.70318 * 15 14 13 17 17 C 1.38210 * 119.99943 * 182.54099 * 12 11 2 18 18 C 1.50695 * 120.00012 * 0.02562 * 17 12 11 19 19 N 1.46501 * 109.47154 * 76.76995 * 18 17 12 20 20 C 1.34778 * 119.99795 * 179.72430 * 19 18 17 21 21 O 1.21282 * 120.00045 * 0.27538 * 20 19 18 22 22 C 1.50697 * 119.99690 * 180.27779 * 20 19 18 23 23 H 1.09001 * 110.02341 * 58.60818 * 22 20 19 24 24 C 1.53876 * 110.03278 * 179.97438 * 22 20 19 25 25 C 1.54266 * 106.59876 * 119.28131 * 24 22 20 26 26 C 1.54890 * 104.19794 * 23.61414 * 25 24 22 27 27 H 1.08996 * 110.76037 * 203.74262 * 26 25 24 28 28 F 1.39903 * 110.75657 * 80.54803 * 26 25 24 29 29 C 1.54267 * 110.03531 * 297.16478 * 22 20 19 30 30 H 1.08990 * 109.47628 * 275.06615 * 1 2 3 31 31 H 1.09002 * 109.47017 * 35.07496 * 1 2 3 32 32 H 1.09005 * 109.47035 * 155.06772 * 1 2 3 33 33 H 0.96998 * 119.99879 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46439 * 328.13249 * 11 2 1 35 35 H 1.08999 * 109.47256 * 208.13559 * 11 2 1 36 36 H 1.08007 * 120.00097 * 359.97438 * 13 12 11 37 37 H 1.08004 * 119.99653 * 180.02562 * 14 13 12 38 38 H 1.07993 * 120.00445 * 179.97438 * 15 14 13 39 39 H 1.07992 * 120.00071 * 180.30243 * 16 15 14 40 40 H 1.08994 * 109.47275 * 316.76856 * 18 17 12 41 41 H 1.09003 * 109.47176 * 196.77044 * 18 17 12 42 42 H 0.96999 * 119.99864 * 0.02562 * 19 18 17 43 43 H 1.09005 * 110.03560 * 238.56810 * 24 22 20 44 44 H 1.09004 * 110.03470 * 0.02562 * 24 22 20 45 45 H 1.09007 * 110.48621 * 142.29013 * 25 24 22 46 46 H 1.08999 * 110.48955 * 264.79647 * 25 24 22 47 47 H 1.09005 * 110.47908 * 335.78800 * 29 22 20 48 48 H 1.09002 * 110.48371 * 98.42686 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1861 0.0000 4 1 3.1657 1.2230 -0.3641 5 6 1.5376 2.3407 0.4679 6 7 0.4098 2.2610 1.1418 7 14 2.3147 4.0077 0.1413 8 1 1.7991 4.5516 -1.1407 9 1 1.9729 4.9384 1.2469 10 1 3.7898 3.8585 0.0581 11 6 2.1976 -1.2686 0.0006 12 6 2.4087 -1.7275 -1.4192 13 6 1.9767 -0.9413 -2.4713 14 6 2.1708 -1.3619 -3.7735 15 6 2.7965 -2.5690 -4.0241 16 6 3.2334 -3.3523 -2.9725 17 6 3.0346 -2.9340 -1.6697 18 6 3.5055 -3.7909 -0.5231 19 7 2.3585 -4.4767 0.0772 20 6 2.5416 -5.3073 1.1227 21 8 3.6552 -5.4831 1.5698 22 6 1.3626 -6.0176 1.7362 23 1 0.8618 -6.6275 0.9843 24 6 1.8299 -6.9018 2.9055 25 6 1.1110 -6.3806 4.1670 26 6 -0.1493 -5.6667 3.6183 27 1 -0.5099 -4.9208 4.3265 28 9 -1.1547 -6.5935 3.3223 29 6 0.3755 -4.9899 2.3273 30 1 -0.3634 0.0907 1.0235 31 1 -0.3633 0.8411 -0.5906 32 1 -0.3633 -0.9319 -0.4332 33 1 -0.0181 3.0679 1.4685 34 1 1.6234 -2.0194 0.5435 35 1 3.1641 -1.1299 0.4851 36 1 1.4875 0.0016 -2.2755 37 1 1.8336 -0.7475 -4.5953 38 1 2.9478 -2.8978 -5.0416 39 1 3.7265 -4.2929 -3.1683 40 1 3.9862 -3.1625 0.2267 41 1 4.2188 -4.5289 -0.8900 42 1 1.4679 -4.3364 -0.2806 43 1 1.5550 -7.9405 2.7214 44 1 2.9096 -6.8169 3.0297 45 1 0.8279 -7.2101 4.8150 46 1 1.7465 -5.6772 4.7051 47 1 0.8912 -4.0599 2.5669 48 1 -0.4440 -4.8049 1.6328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570027064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:38 Heat of formation + Delta-G solvation = -50.226703 kcal Electronic energy + Delta-G solvation = -29296.826301 eV Core-core repulsion = 25265.993274 eV Total energy + Delta-G solvation = -4030.833027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -47.73238 -40.21545 -39.11833 -36.74923 -35.59333 -34.88747 -32.07674 -31.32916 -29.91428 -29.34366 -28.68441 -26.46204 -25.87862 -25.38672 -22.26585 -22.14919 -21.03481 -20.88868 -20.07664 -19.66780 -17.76940 -16.82415 -16.50009 -16.22049 -15.91912 -15.72325 -15.43861 -15.11647 -14.85196 -14.69467 -14.22174 -13.98659 -13.69005 -13.55522 -13.28479 -13.14396 -13.02051 -12.61428 -12.41932 -12.27337 -12.25931 -11.73993 -11.53649 -11.46876 -11.31703 -11.08155 -11.01127 -10.93648 -10.81217 -10.68566 -10.64123 -10.54327 -10.41674 -10.05367 -9.91423 -9.81547 -9.03199 -8.62638 -8.46640 -8.16743 -6.84894 -5.79127 -3.27091 1.57562 1.83201 2.62467 3.26622 3.34457 3.41852 3.42692 4.02661 4.13650 4.21447 4.44552 4.49605 4.59410 4.85137 4.96205 5.02811 5.14394 5.16394 5.22450 5.25211 5.25837 5.37314 5.39064 5.44930 5.52083 5.59072 5.66154 5.73937 5.82390 5.88982 5.90333 6.06472 6.08481 6.12989 6.29122 6.35816 6.43027 6.45258 6.59125 6.67684 6.79289 6.98232 7.18852 7.30974 7.45586 7.52479 7.65735 7.76582 8.21545 8.32889 9.17080 9.79216 10.27537 11.25555 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.003625 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.505425 B = 7722.212446 C = 9509.813497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.597 5.597 3 C -0.258 4.258 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.181 3.819 12 C -0.071 4.071 13 C -0.091 4.091 14 C -0.120 4.120 15 C -0.140 4.140 16 C -0.110 4.110 17 C -0.125 4.125 18 C 0.166 3.834 19 N -0.719 5.719 20 C 0.519 3.481 21 O -0.541 6.541 22 C -0.113 4.113 23 H 0.100 0.900 24 C -0.118 4.118 25 C -0.147 4.147 26 C 0.083 3.917 27 H 0.095 0.905 28 F -0.209 7.209 29 C -0.141 4.141 30 H 0.031 0.969 31 H 0.041 0.959 32 H -0.003 1.003 33 H 0.253 0.747 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.403 0.597 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 -16.681 -1.846 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.053 3.947 12 C -0.075 4.075 13 C -0.109 4.109 14 C -0.138 4.138 15 C -0.158 4.158 16 C -0.128 4.128 17 C -0.126 4.126 18 C 0.043 3.957 19 N -0.370 5.370 20 C 0.305 3.695 21 O -0.419 6.419 22 C -0.134 4.134 23 H 0.119 0.881 24 C -0.156 4.156 25 C -0.185 4.185 26 C 0.047 3.953 27 H 0.113 0.887 28 F -0.190 7.190 29 C -0.179 4.179 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.161 0.839 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.237 0.763 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.112 0.888 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.484 -16.667 -1.428 16.735 hybrid contribution -0.133 1.107 -0.597 1.265 sum 0.351 -15.560 -2.024 15.695 Atomic orbital electron populations 1.20803 0.82465 0.95393 0.99531 1.43866 1.01797 1.00398 1.85869 1.19184 0.98315 0.85384 1.35895 0.91380 1.25007 0.97805 0.98494 0.97958 1.70066 1.19298 1.27243 1.38404 0.86285 0.78886 0.84155 0.77420 1.21456 1.21729 1.20442 1.19762 0.96680 0.88724 0.89505 1.21300 0.94393 0.92229 0.99556 1.21442 0.97942 1.00558 0.90995 1.21266 0.99159 0.96192 0.97199 1.20974 1.00908 0.95667 0.98292 1.20877 1.00499 0.99343 0.92125 1.19629 1.03063 0.96123 0.93735 1.20121 0.87890 0.94259 0.93411 1.46089 1.11463 1.46062 1.33341 1.20483 0.90453 0.79015 0.79518 1.90665 1.25693 1.63823 1.61707 1.21932 0.94718 0.97456 0.99315 0.88139 1.22159 1.02941 0.98365 0.92099 1.22971 0.95933 1.01235 0.98366 1.22461 0.86058 0.89466 0.97343 0.88737 1.92802 1.62742 1.68658 1.94812 1.22989 0.99029 0.98720 0.97124 0.95038 0.93996 0.98452 0.93705 0.93213 0.91899 0.83881 0.86771 0.86937 0.86869 0.90401 0.91234 0.76297 0.91159 0.88637 0.90283 0.89485 0.88760 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 8.52 59.84 0.51 4.25 16 2 N -0.60 -13.93 1.73 -182.51 -0.32 -14.24 16 3 C -0.26 -6.74 9.00 -15.05 -0.14 -6.88 16 4 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 5 C 0.01 0.16 5.10 -17.43 -0.09 0.07 16 6 N -0.91 -25.42 10.70 55.49 0.59 -24.83 16 7 Si 0.90 21.32 29.57 -169.99 -5.03 16.29 16 8 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 C 0.18 3.49 4.88 -5.20 -0.03 3.46 16 12 C -0.07 -1.22 5.88 -104.63 -0.62 -1.83 16 13 C -0.09 -1.62 9.16 -39.58 -0.36 -1.98 16 14 C -0.12 -1.80 10.05 -39.58 -0.40 -2.19 16 15 C -0.14 -1.86 10.05 -39.58 -0.40 -2.26 16 16 C -0.11 -1.45 9.67 -39.58 -0.38 -1.83 16 17 C -0.12 -1.79 5.25 -104.63 -0.55 -2.34 16 18 C 0.17 2.22 5.16 -5.20 -0.03 2.19 16 19 N -0.72 -8.66 4.92 -61.48 -0.30 -8.96 16 20 C 0.52 6.61 6.99 -10.99 -0.08 6.53 16 21 O -0.54 -8.72 15.21 5.56 0.08 -8.64 16 22 C -0.11 -1.14 3.30 -90.65 -0.30 -1.44 16 23 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 24 C -0.12 -1.17 6.40 -25.61 -0.16 -1.33 16 25 C -0.15 -1.30 6.63 -25.07 -0.17 -1.47 16 26 C 0.08 0.78 4.70 -24.72 -0.12 0.66 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 F -0.21 -2.35 17.22 2.25 0.04 -2.31 16 29 C -0.14 -1.37 6.12 -25.05 -0.15 -1.52 16 30 H 0.03 0.79 7.34 -51.93 -0.38 0.41 16 31 H 0.04 1.04 7.33 -51.93 -0.38 0.66 16 32 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 33 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.05 0.89 7.48 -51.93 -0.39 0.50 16 35 H 0.06 1.28 7.60 -51.93 -0.39 0.88 16 36 H 0.14 2.93 6.20 -52.48 -0.33 2.61 16 37 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.11 1.25 8.01 -52.49 -0.42 0.83 16 40 H 0.08 1.16 7.28 -51.93 -0.38 0.78 16 41 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 42 H 0.40 4.37 8.46 -40.82 -0.35 4.02 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 1.11 6.39 -51.93 -0.33 0.78 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 1.01 7.85 -51.93 -0.41 0.60 16 48 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -29.92 388.61 -10.03 -39.95 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.51 Total: 4.78 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -3.45 Total: -7.90 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.03 Total: -48.03 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.92 -10.03 -39.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570027064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.277 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds