Wall clock time and date at job start Tue Mar 31 2020 18:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36950 * 119.99663 * 2 1 4 4 H 1.07996 * 119.99699 * 202.90847 * 3 2 1 5 5 C 1.38810 * 119.99976 * 22.90892 * 3 2 1 6 6 N 1.31624 * 119.99832 * 12.97831 * 5 3 2 7 7 Si 1.86796 * 119.99868 * 192.97728 * 5 3 2 8 8 H 1.48505 * 109.47084 * 90.00118 * 7 5 3 9 9 H 1.48498 * 109.47241 * 209.99965 * 7 5 3 10 10 H 1.48497 * 109.47203 * 330.00143 * 7 5 3 11 11 C 1.46501 * 120.00713 * 179.97438 * 2 1 3 12 12 C 1.50696 * 109.47248 * 88.13087 * 11 2 1 13 13 C 1.38258 * 120.00000 * 2.56455 * 12 11 2 14 14 C 1.38215 * 119.99924 * 179.97438 * 13 12 11 15 15 C 1.38253 * 120.00279 * 0.02562 * 14 13 12 16 16 C 1.38220 * 119.99692 * 359.70318 * 15 14 13 17 17 C 1.38210 * 119.99943 * 182.54099 * 12 11 2 18 18 C 1.50695 * 120.00012 * 0.02562 * 17 12 11 19 19 N 1.46501 * 109.47154 * 76.76995 * 18 17 12 20 20 C 1.34778 * 119.99795 * 179.72430 * 19 18 17 21 21 O 1.21282 * 120.00045 * 0.27538 * 20 19 18 22 22 C 1.50697 * 119.99690 * 180.27779 * 20 19 18 23 23 H 1.09001 * 110.02341 * 58.60818 * 22 20 19 24 24 C 1.53876 * 110.03278 * 179.97438 * 22 20 19 25 25 C 1.54266 * 106.59876 * 119.28131 * 24 22 20 26 26 C 1.54890 * 104.19794 * 23.61414 * 25 24 22 27 27 H 1.08996 * 110.76037 * 203.74262 * 26 25 24 28 28 F 1.39903 * 110.75657 * 80.54803 * 26 25 24 29 29 C 1.54267 * 110.03531 * 297.16478 * 22 20 19 30 30 H 1.08990 * 109.47628 * 275.06615 * 1 2 3 31 31 H 1.09002 * 109.47017 * 35.07496 * 1 2 3 32 32 H 1.09005 * 109.47035 * 155.06772 * 1 2 3 33 33 H 0.96998 * 119.99879 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46439 * 328.13249 * 11 2 1 35 35 H 1.08999 * 109.47256 * 208.13559 * 11 2 1 36 36 H 1.08007 * 120.00097 * 359.97438 * 13 12 11 37 37 H 1.08004 * 119.99653 * 180.02562 * 14 13 12 38 38 H 1.07993 * 120.00445 * 179.97438 * 15 14 13 39 39 H 1.07992 * 120.00071 * 180.30243 * 16 15 14 40 40 H 1.08994 * 109.47275 * 316.76856 * 18 17 12 41 41 H 1.09003 * 109.47176 * 196.77044 * 18 17 12 42 42 H 0.96999 * 119.99864 * 0.02562 * 19 18 17 43 43 H 1.09005 * 110.03560 * 238.56810 * 24 22 20 44 44 H 1.09004 * 110.03470 * 0.02562 * 24 22 20 45 45 H 1.09007 * 110.48621 * 142.29013 * 25 24 22 46 46 H 1.08999 * 110.48955 * 264.79647 * 25 24 22 47 47 H 1.09005 * 110.47908 * 335.78800 * 29 22 20 48 48 H 1.09002 * 110.48371 * 98.42686 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1861 0.0000 4 1 3.1657 1.2230 -0.3641 5 6 1.5376 2.3407 0.4679 6 7 0.4098 2.2610 1.1418 7 14 2.3147 4.0077 0.1413 8 1 1.7991 4.5516 -1.1407 9 1 1.9729 4.9384 1.2469 10 1 3.7898 3.8585 0.0581 11 6 2.1976 -1.2686 0.0006 12 6 2.4087 -1.7275 -1.4192 13 6 1.9767 -0.9413 -2.4713 14 6 2.1708 -1.3619 -3.7735 15 6 2.7965 -2.5690 -4.0241 16 6 3.2334 -3.3523 -2.9725 17 6 3.0346 -2.9340 -1.6697 18 6 3.5055 -3.7909 -0.5231 19 7 2.3585 -4.4767 0.0772 20 6 2.5416 -5.3073 1.1227 21 8 3.6552 -5.4831 1.5698 22 6 1.3626 -6.0176 1.7362 23 1 0.8618 -6.6275 0.9843 24 6 1.8299 -6.9018 2.9055 25 6 1.1110 -6.3806 4.1670 26 6 -0.1493 -5.6667 3.6183 27 1 -0.5099 -4.9208 4.3265 28 9 -1.1547 -6.5935 3.3223 29 6 0.3755 -4.9899 2.3273 30 1 -0.3634 0.0907 1.0235 31 1 -0.3633 0.8411 -0.5906 32 1 -0.3633 -0.9319 -0.4332 33 1 -0.0181 3.0679 1.4685 34 1 1.6234 -2.0194 0.5435 35 1 3.1641 -1.1299 0.4851 36 1 1.4875 0.0016 -2.2755 37 1 1.8336 -0.7475 -4.5953 38 1 2.9478 -2.8978 -5.0416 39 1 3.7265 -4.2929 -3.1683 40 1 3.9862 -3.1625 0.2267 41 1 4.2188 -4.5289 -0.8900 42 1 1.4679 -4.3364 -0.2806 43 1 1.5550 -7.9405 2.7214 44 1 2.9096 -6.8169 3.0297 45 1 0.8279 -7.2101 4.8150 46 1 1.7465 -5.6772 4.7051 47 1 0.8912 -4.0599 2.5669 48 1 -0.4440 -4.8049 1.6328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570027064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:37 Heat of formation + Delta-G solvation = -64.779434 kcal Electronic energy + Delta-G solvation = -29297.457355 eV Core-core repulsion = 25265.993274 eV Total energy + Delta-G solvation = -4031.464081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.54493 -41.26856 -40.30207 -37.62353 -37.34700 -35.99207 -33.78930 -32.52571 -31.44894 -30.20555 -29.46870 -28.06097 -27.63679 -26.65573 -23.87051 -23.09705 -22.24559 -21.75584 -21.43727 -20.60823 -18.76748 -18.66626 -17.49879 -17.19519 -17.07306 -16.84667 -16.66967 -16.29371 -15.98588 -15.74720 -15.56619 -15.38674 -15.01061 -14.81553 -14.73267 -14.48360 -14.01044 -13.79263 -13.67307 -13.46384 -13.38672 -13.11046 -12.95973 -12.81839 -12.58650 -12.34805 -12.34003 -12.24699 -12.04809 -11.96569 -11.86167 -11.80209 -11.76329 -11.66609 -11.46151 -10.86767 -10.65767 -10.10148 -9.63787 -9.41229 -8.80291 -7.83677 -5.32367 0.40634 0.63648 1.44883 1.46319 1.54343 1.61617 2.26109 2.49579 3.01555 3.25329 3.30145 3.38329 3.65236 3.68464 3.77575 3.83995 4.06516 4.15176 4.18222 4.24561 4.35691 4.38078 4.41638 4.45726 4.50830 4.61917 4.65330 4.70685 4.73495 4.82686 4.85061 4.87075 4.99615 5.04580 5.13459 5.19837 5.25675 5.31296 5.32884 5.33376 5.44126 5.62204 5.65612 5.72117 5.77149 5.94152 6.22697 6.33573 6.53755 7.15295 7.21892 7.86005 8.29098 9.19150 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.003625 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.505425 B = 7722.212446 C = 9509.813497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.608 5.608 3 C -0.256 4.256 4 H 0.062 0.938 5 C -0.045 4.045 6 N -0.935 5.935 7 Si 0.960 3.040 8 H -0.286 1.286 9 H -0.295 1.295 10 H -0.273 1.273 11 C 0.187 3.813 12 C -0.087 4.087 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.128 4.128 16 C -0.102 4.102 17 C -0.116 4.116 18 C 0.171 3.829 19 N -0.711 5.711 20 C 0.519 3.481 21 O -0.578 6.578 22 C -0.107 4.107 23 H 0.121 0.879 24 C -0.119 4.119 25 C -0.144 4.144 26 C 0.082 3.918 27 H 0.107 0.893 28 F -0.218 7.218 29 C -0.139 4.139 30 H 0.006 0.994 31 H 0.015 0.985 32 H 0.027 0.973 33 H 0.248 0.752 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.410 0.590 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -18.639 -3.515 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.331 5.331 3 C -0.387 4.387 4 H 0.080 0.920 5 C -0.241 4.241 6 N -0.581 5.581 7 Si 0.789 3.211 8 H -0.212 1.212 9 H -0.222 1.222 10 H -0.198 1.198 11 C 0.061 3.939 12 C -0.090 4.090 13 C -0.133 4.133 14 C -0.141 4.141 15 C -0.146 4.146 16 C -0.120 4.120 17 C -0.117 4.117 18 C 0.047 3.953 19 N -0.362 5.362 20 C 0.307 3.693 21 O -0.458 6.458 22 C -0.128 4.128 23 H 0.138 0.862 24 C -0.156 4.156 25 C -0.182 4.182 26 C 0.046 3.954 27 H 0.124 0.876 28 F -0.199 7.199 29 C -0.177 4.177 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.246 0.754 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.867 -18.648 -3.121 18.927 hybrid contribution -0.199 1.617 -0.150 1.636 sum 0.668 -17.031 -3.271 17.355 Atomic orbital electron populations 1.20497 0.82488 0.95734 0.97606 1.43978 1.01997 1.01141 1.85979 1.19359 0.98096 0.86679 1.34531 0.91975 1.25653 0.98551 1.01387 0.98491 1.70210 1.20583 1.27480 1.39866 0.85370 0.78339 0.80476 0.76911 1.21246 1.22160 1.19772 1.19749 0.95479 0.87256 0.91390 1.20901 0.96714 0.93783 0.97619 1.21213 0.99617 0.99746 0.92734 1.21437 0.99121 0.97269 0.96246 1.21352 0.98868 0.94328 1.00075 1.21234 0.99385 1.00289 0.91141 1.19623 1.02160 0.94974 0.94900 1.20010 0.88418 0.94171 0.92659 1.46023 1.11526 1.45541 1.33143 1.20927 0.90655 0.78629 0.79093 1.90654 1.27330 1.65070 1.62727 1.21963 0.93650 0.97465 0.99743 0.86152 1.22157 1.01817 0.99121 0.92537 1.22963 0.95527 1.01606 0.98114 1.22542 0.86001 0.89534 0.97347 0.87563 1.92785 1.63172 1.69032 1.94892 1.22968 0.99041 0.98083 0.97633 0.97588 0.96653 0.95402 0.94278 0.92005 0.93584 0.87474 0.85247 0.83463 0.83744 0.92427 0.90044 0.75372 0.89938 0.90549 0.89121 0.89507 0.90000 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.60 8.52 127.77 1.09 9.69 16 2 N -0.61 -29.17 1.73 -731.33 -1.27 -30.43 16 3 C -0.26 -13.75 9.00 84.03 0.76 -13.00 16 4 H 0.06 3.34 7.86 -2.91 -0.02 3.32 16 5 C -0.05 -2.49 5.10 84.86 0.43 -2.06 16 6 N -0.93 -54.14 10.70 21.65 0.23 -53.90 16 7 Si 0.96 44.74 29.57 68.60 2.03 46.77 16 8 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 C 0.19 7.34 4.88 85.63 0.42 7.76 16 12 C -0.09 -2.93 5.88 -19.87 -0.12 -3.05 16 13 C -0.11 -4.04 9.16 22.27 0.20 -3.84 16 14 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 15 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 16 C -0.10 -2.29 9.67 22.27 0.22 -2.07 16 17 C -0.12 -3.10 5.25 -19.87 -0.10 -3.20 16 18 C 0.17 4.33 5.16 85.63 0.44 4.77 16 19 N -0.71 -16.10 4.92 -466.80 -2.30 -18.39 16 20 C 0.52 12.69 6.99 87.66 0.61 13.30 16 21 O -0.58 -18.45 15.21 -3.04 -0.05 -18.49 16 22 C -0.11 -1.99 3.30 -10.82 -0.04 -2.03 16 23 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 24 C -0.12 -2.20 6.40 31.32 0.20 -2.00 16 25 C -0.14 -2.37 6.63 31.67 0.21 -2.16 16 26 C 0.08 1.42 4.70 31.90 0.15 1.57 16 27 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 28 F -0.22 -4.50 17.22 44.97 0.77 -3.72 16 29 C -0.14 -2.52 6.12 31.68 0.19 -2.33 16 30 H 0.01 0.30 7.34 -2.39 -0.02 0.29 16 31 H 0.01 0.77 7.33 -2.39 -0.02 0.75 16 32 H 0.03 1.11 8.03 -2.38 -0.02 1.09 16 33 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.06 2.22 7.48 -2.39 -0.02 2.20 16 35 H 0.05 1.93 7.60 -2.39 -0.02 1.91 16 36 H 0.11 4.55 6.20 -2.91 -0.02 4.53 16 37 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.14 2.42 8.01 -2.91 -0.02 2.39 16 40 H 0.06 1.72 7.28 -2.39 -0.02 1.70 16 41 H 0.08 1.90 7.97 -2.39 -0.02 1.88 16 42 H 0.41 8.10 8.46 -92.71 -0.78 7.31 16 43 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 44 H 0.08 1.75 6.39 -2.38 -0.02 1.74 16 45 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.71 7.85 -2.38 -0.02 1.69 16 48 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -66.14 388.61 4.71 -61.42 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.18 Total: 21.26 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 5.11 Total: -4.51 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -3.33 Total: -102.73 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.77 Total: -3.72 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -66.14 4.71 -61.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570027064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.355 kcal (2) G-P(sol) polarization free energy of solvation -66.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds