Wall clock time and date at job start Tue Mar 31 2020 18:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 120.00344 * 2 1 4 4 H 1.08003 * 120.00166 * 326.19737 * 3 2 1 5 5 C 1.38810 * 120.00137 * 146.19871 * 3 2 1 6 6 N 1.31621 * 120.00227 * 157.18797 * 5 3 2 7 7 Si 1.86797 * 119.99914 * 337.18535 * 5 3 2 8 8 H 1.48499 * 109.47449 * 95.50460 * 7 5 3 9 9 H 1.48510 * 109.47293 * 215.50523 * 7 5 3 10 10 H 1.48505 * 109.47409 * 335.50405 * 7 5 3 11 11 C 1.46507 * 119.99532 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.46974 * 84.26063 * 11 2 1 13 13 C 1.38263 * 120.00231 * 3.37070 * 12 11 2 14 14 C 1.38216 * 119.99798 * 180.23453 * 13 12 11 15 15 C 1.38253 * 120.00001 * 359.81407 * 14 13 12 16 16 C 1.38211 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.38212 * 119.99991 * 183.17243 * 12 11 2 18 18 C 1.50699 * 120.00097 * 359.97438 * 17 12 11 19 19 N 1.46505 * 109.46644 * 77.68052 * 18 17 12 20 20 C 1.34778 * 119.99946 * 180.02562 * 19 18 17 21 21 O 1.21277 * 119.99829 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99964 * 179.97438 * 20 19 18 23 23 H 1.09003 * 110.81621 * 56.66421 * 22 20 19 24 24 C 1.55234 * 110.89902 * 293.21439 * 22 20 19 25 25 C 1.54264 * 104.23208 * 203.79072 * 24 22 20 26 26 C 1.53875 * 106.59781 * 23.61163 * 25 24 22 27 27 H 1.08999 * 110.07476 * 119.30475 * 26 25 24 28 28 F 1.39897 * 110.03380 * 240.71390 * 26 25 24 29 29 C 1.54268 * 106.59954 * 359.97438 * 26 25 24 30 30 H 1.09003 * 109.46898 * 265.21149 * 1 2 3 31 31 H 1.09004 * 109.46886 * 25.20748 * 1 2 3 32 32 H 1.09001 * 109.47233 * 145.20694 * 1 2 3 33 33 H 0.97002 * 120.00110 * 179.97438 * 6 5 3 34 34 H 1.08993 * 109.47664 * 324.25395 * 11 2 1 35 35 H 1.09002 * 109.46765 * 204.25334 * 11 2 1 36 36 H 1.07992 * 120.00038 * 0.07580 * 13 12 11 37 37 H 1.07999 * 119.99196 * 179.84035 * 14 13 12 38 38 H 1.08005 * 119.99818 * 179.97438 * 15 14 13 39 39 H 1.07998 * 119.99911 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.47532 * 317.68635 * 18 17 12 41 41 H 1.08998 * 109.47346 * 197.67674 * 18 17 12 42 42 H 0.96998 * 120.00045 * 0.02562 * 19 18 17 43 43 H 1.09003 * 110.46762 * 85.10748 * 24 22 20 44 44 H 1.08996 * 110.46863 * 322.48171 * 24 22 20 45 45 H 1.08997 * 110.03558 * 264.33219 * 25 24 22 46 46 H 1.09001 * 110.07534 * 142.91398 * 25 24 22 47 47 H 1.09006 * 110.48144 * 95.06596 * 29 26 25 48 48 H 1.08998 * 110.49147 * 217.57483 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7468 2.0422 -0.5204 5 6 3.3619 1.2874 0.6688 6 7 4.2265 2.2189 0.3263 7 14 3.7661 0.1021 2.0548 8 1 4.5711 -1.0264 1.5222 9 1 4.5421 0.8123 3.1031 10 1 2.5064 -0.4220 2.6411 11 6 2.1975 -1.2688 0.0006 12 6 2.3255 -1.7755 -1.4129 13 6 1.8470 -1.0170 -2.4652 14 6 1.9602 -1.4840 -3.7612 15 6 2.5552 -2.7078 -4.0055 16 6 3.0375 -3.4640 -2.9539 17 6 2.9250 -2.9966 -1.6576 18 6 3.4510 -3.8210 -0.5111 19 7 2.3349 -4.4911 0.1609 20 6 2.5679 -5.2875 1.2230 21 8 3.7016 -5.4498 1.6220 22 6 1.4198 -5.9763 1.9146 23 1 0.8540 -6.5872 1.2111 24 6 0.4954 -4.9442 2.6145 25 6 -0.2051 -5.7541 3.7249 26 6 0.7057 -6.9553 4.0340 27 1 1.0265 -6.9234 5.0752 28 9 0.0253 -8.1507 3.7790 29 6 1.9275 -6.8336 3.1001 30 1 -0.3633 -0.0858 1.0241 31 1 -0.3633 0.9298 -0.4377 32 1 -0.3634 -0.8439 -0.5864 33 1 5.0734 2.2901 0.7939 34 1 1.6569 -2.0002 0.6012 35 1 3.1906 -1.1148 0.4227 36 1 1.3826 -0.0609 -2.2744 37 1 1.5841 -0.8927 -4.5829 38 1 2.6432 -3.0729 -5.0182 39 1 3.5019 -4.4202 -3.1448 40 1 3.9648 -3.1717 0.1977 41 1 4.1480 -4.5682 -0.8906 42 1 1.4282 -4.3616 -0.1585 43 1 -0.2372 -4.5495 1.9104 44 1 1.0851 -4.1356 3.0463 45 1 -1.1772 -6.1027 3.3762 46 1 -0.3271 -5.1390 4.6165 47 1 2.7488 -6.3300 3.6101 48 1 2.2418 -7.8178 2.7528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570027066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:48 Heat of formation + Delta-G solvation = -45.385948 kcal Electronic energy + Delta-G solvation = -29646.919476 eV Core-core repulsion = 25616.296360 eV Total energy + Delta-G solvation = -4030.623116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -47.84966 -40.18920 -39.14758 -36.93699 -35.87286 -34.89055 -31.90083 -31.43657 -30.51240 -29.44191 -28.71032 -26.91903 -26.00274 -25.37399 -22.37290 -22.11509 -20.95880 -20.81704 -20.38377 -19.97793 -17.85140 -17.04214 -16.59771 -16.26639 -16.11757 -15.78109 -15.24577 -15.20084 -14.98791 -14.48670 -14.38341 -14.14718 -13.75719 -13.71057 -13.58325 -13.43886 -12.92738 -12.72600 -12.48345 -12.39605 -12.16687 -12.09282 -11.86890 -11.83594 -11.50116 -11.43972 -11.14403 -10.99989 -10.93093 -10.91500 -10.78199 -10.59712 -10.41493 -10.14087 -9.86734 -9.65057 -9.04098 -8.65228 -8.45314 -8.12455 -7.02273 -6.06333 -3.46260 1.58463 1.84258 2.60007 3.22842 3.24839 3.42199 3.43492 3.99229 4.05181 4.21771 4.35772 4.43817 4.55053 4.82252 4.86168 4.91116 4.98099 5.02492 5.11446 5.13370 5.15910 5.27873 5.29704 5.38091 5.47866 5.52881 5.59737 5.62060 5.82611 5.83848 5.85991 5.92498 6.00693 6.04073 6.16934 6.18214 6.21973 6.40123 6.41342 6.52173 6.54797 6.60322 6.80430 6.97198 7.17127 7.43433 7.50821 7.94070 8.20154 8.26447 8.86868 9.62342 9.99205 11.09136 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.004058 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.970911 B = 6898.762192 C = 8055.377388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.608 5.608 3 C -0.273 4.273 4 H 0.084 0.916 5 C 0.037 3.963 6 N -0.896 5.896 7 Si 0.870 3.130 8 H -0.284 1.284 9 H -0.299 1.299 10 H -0.270 1.270 11 C 0.167 3.833 12 C -0.066 4.066 13 C -0.086 4.086 14 C -0.118 4.118 15 C -0.139 4.139 16 C -0.108 4.108 17 C -0.124 4.124 18 C 0.161 3.839 19 N -0.719 5.719 20 C 0.520 3.480 21 O -0.541 6.541 22 C -0.116 4.116 23 H 0.105 0.895 24 C -0.115 4.115 25 C -0.148 4.148 26 C 0.084 3.916 27 H 0.089 0.911 28 F -0.214 7.214 29 C -0.130 4.130 30 H 0.008 0.992 31 H 0.047 0.953 32 H 0.028 0.972 33 H 0.264 0.736 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.402 0.598 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.816 -16.877 -0.149 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.331 5.331 3 C -0.401 4.401 4 H 0.101 0.899 5 C -0.164 4.164 6 N -0.537 5.537 7 Si 0.701 3.299 8 H -0.213 1.213 9 H -0.227 1.227 10 H -0.195 1.195 11 C 0.041 3.959 12 C -0.069 4.069 13 C -0.104 4.104 14 C -0.137 4.137 15 C -0.157 4.157 16 C -0.126 4.126 17 C -0.125 4.125 18 C 0.039 3.961 19 N -0.370 5.370 20 C 0.306 3.694 21 O -0.418 6.418 22 C -0.137 4.137 23 H 0.123 0.877 24 C -0.153 4.153 25 C -0.186 4.186 26 C 0.047 3.953 27 H 0.107 0.893 28 F -0.195 7.195 29 C -0.168 4.168 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.236 0.764 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.116 0.884 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.872 -16.890 0.189 18.635 hybrid contribution 0.045 -0.490 0.489 0.694 sum -7.828 -17.380 0.678 19.074 Atomic orbital electron populations 1.21109 0.84229 0.99282 0.97587 1.44032 1.00882 1.01749 1.86462 1.18808 1.03136 0.89772 1.28413 0.89878 1.25362 0.96753 0.96458 0.97838 1.69857 1.07582 1.35592 1.40638 0.87078 0.78128 0.80561 0.84163 1.21252 1.22684 1.19480 1.20261 0.97331 0.87773 0.90517 1.21029 0.94694 0.92250 0.98930 1.21296 0.98015 1.00027 0.91022 1.21241 0.99418 0.95916 0.97103 1.20973 1.00748 0.95648 0.98291 1.20864 1.00315 0.99395 0.92065 1.19621 1.03002 0.95958 0.93929 1.20182 0.88448 0.94903 0.92587 1.46103 1.11087 1.48120 1.31725 1.20407 0.90239 0.78903 0.79895 1.90703 1.23607 1.62788 1.64660 1.22359 0.95610 0.97773 0.97943 0.87656 1.22424 0.98083 0.97322 0.97434 1.22772 0.99476 0.96309 1.00048 1.22255 0.91740 0.80775 1.00492 0.89263 1.92819 1.81843 1.48976 1.95859 1.22841 0.97411 1.01405 0.95160 0.97409 0.93389 0.95321 0.92601 0.93115 0.90883 0.84236 0.86645 0.86805 0.86746 0.90541 0.90886 0.76370 0.90037 0.90286 0.89844 0.89876 0.88431 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.26 9.98 59.85 0.60 2.85 16 2 N -0.61 -13.57 1.37 -182.49 -0.25 -13.82 16 3 C -0.27 -7.30 9.53 -15.06 -0.14 -7.44 16 4 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 5 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 6 N -0.90 -26.90 13.97 55.49 0.78 -26.13 16 7 Si 0.87 22.04 24.89 -169.99 -4.23 17.81 16 8 H -0.28 -7.11 6.66 56.52 0.38 -6.74 16 9 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.17 3.45 3.55 -5.19 -0.02 3.43 16 12 C -0.07 -1.21 5.87 -104.62 -0.61 -1.82 16 13 C -0.09 -1.55 9.13 -39.58 -0.36 -1.91 16 14 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 15 C -0.14 -1.91 10.05 -39.59 -0.40 -2.31 16 16 C -0.11 -1.51 9.67 -39.58 -0.38 -1.90 16 17 C -0.12 -1.97 5.25 -104.62 -0.55 -2.52 16 18 C 0.16 2.49 5.16 -5.19 -0.03 2.46 16 19 N -0.72 -9.41 5.03 -61.47 -0.31 -9.72 16 20 C 0.52 7.11 7.15 -10.98 -0.08 7.03 16 21 O -0.54 -9.45 15.72 5.56 0.09 -9.36 16 22 C -0.12 -1.17 3.30 -89.61 -0.30 -1.47 16 23 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 24 C -0.11 -1.06 6.28 -24.89 -0.16 -1.22 16 25 C -0.15 -1.19 6.65 -25.61 -0.17 -1.36 16 26 C 0.08 0.74 4.68 -25.61 -0.12 0.62 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 F -0.21 -2.28 17.05 2.25 0.04 -2.24 16 29 C -0.13 -1.31 5.68 -25.08 -0.14 -1.45 16 30 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.05 0.86 8.00 -51.93 -0.42 0.44 16 32 H 0.03 0.45 8.11 -51.93 -0.42 0.03 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.05 0.95 7.54 -51.93 -0.39 0.56 16 35 H 0.07 1.73 2.68 -51.93 -0.14 1.60 16 36 H 0.14 2.77 6.21 -52.49 -0.33 2.44 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 39 H 0.11 1.35 8.02 -52.49 -0.42 0.93 16 40 H 0.08 1.40 7.26 -51.93 -0.38 1.03 16 41 H 0.07 1.06 7.98 -51.93 -0.41 0.65 16 42 H 0.40 4.43 8.46 -40.82 -0.35 4.09 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 45 H 0.08 0.63 8.02 -51.93 -0.42 0.21 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 1.10 7.44 -51.93 -0.39 0.71 16 48 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -31.89 385.23 -8.87 -40.75 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.44 Total: 5.18 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.35 Total: -8.28 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.22 Total: -49.67 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.23 Total: 17.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.89 -8.87 -40.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570027066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.631 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds