Wall clock time and date at job start Tue Mar 31 2020 18:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 120.00344 * 2 1 4 4 H 1.08003 * 120.00166 * 326.19737 * 3 2 1 5 5 C 1.38810 * 120.00137 * 146.19871 * 3 2 1 6 6 N 1.31621 * 120.00227 * 157.18797 * 5 3 2 7 7 Si 1.86797 * 119.99914 * 337.18535 * 5 3 2 8 8 H 1.48499 * 109.47449 * 95.50460 * 7 5 3 9 9 H 1.48510 * 109.47293 * 215.50523 * 7 5 3 10 10 H 1.48505 * 109.47409 * 335.50405 * 7 5 3 11 11 C 1.46507 * 119.99532 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.46974 * 84.26063 * 11 2 1 13 13 C 1.38263 * 120.00231 * 3.37070 * 12 11 2 14 14 C 1.38216 * 119.99798 * 180.23453 * 13 12 11 15 15 C 1.38253 * 120.00001 * 359.81407 * 14 13 12 16 16 C 1.38211 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.38212 * 119.99991 * 183.17243 * 12 11 2 18 18 C 1.50699 * 120.00097 * 359.97438 * 17 12 11 19 19 N 1.46505 * 109.46644 * 77.68052 * 18 17 12 20 20 C 1.34778 * 119.99946 * 180.02562 * 19 18 17 21 21 O 1.21277 * 119.99829 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99964 * 179.97438 * 20 19 18 23 23 H 1.09003 * 110.81621 * 56.66421 * 22 20 19 24 24 C 1.55234 * 110.89902 * 293.21439 * 22 20 19 25 25 C 1.54264 * 104.23208 * 203.79072 * 24 22 20 26 26 C 1.53875 * 106.59781 * 23.61163 * 25 24 22 27 27 H 1.08999 * 110.07476 * 119.30475 * 26 25 24 28 28 F 1.39897 * 110.03380 * 240.71390 * 26 25 24 29 29 C 1.54268 * 106.59954 * 359.97438 * 26 25 24 30 30 H 1.09003 * 109.46898 * 265.21149 * 1 2 3 31 31 H 1.09004 * 109.46886 * 25.20748 * 1 2 3 32 32 H 1.09001 * 109.47233 * 145.20694 * 1 2 3 33 33 H 0.97002 * 120.00110 * 179.97438 * 6 5 3 34 34 H 1.08993 * 109.47664 * 324.25395 * 11 2 1 35 35 H 1.09002 * 109.46765 * 204.25334 * 11 2 1 36 36 H 1.07992 * 120.00038 * 0.07580 * 13 12 11 37 37 H 1.07999 * 119.99196 * 179.84035 * 14 13 12 38 38 H 1.08005 * 119.99818 * 179.97438 * 15 14 13 39 39 H 1.07998 * 119.99911 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.47532 * 317.68635 * 18 17 12 41 41 H 1.08998 * 109.47346 * 197.67674 * 18 17 12 42 42 H 0.96998 * 120.00045 * 0.02562 * 19 18 17 43 43 H 1.09003 * 110.46762 * 85.10748 * 24 22 20 44 44 H 1.08996 * 110.46863 * 322.48171 * 24 22 20 45 45 H 1.08997 * 110.03558 * 264.33219 * 25 24 22 46 46 H 1.09001 * 110.07534 * 142.91398 * 25 24 22 47 47 H 1.09006 * 110.48144 * 95.06596 * 29 26 25 48 48 H 1.08998 * 110.49147 * 217.57483 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7468 2.0422 -0.5204 5 6 3.3619 1.2874 0.6688 6 7 4.2265 2.2189 0.3263 7 14 3.7661 0.1021 2.0548 8 1 4.5711 -1.0264 1.5222 9 1 4.5421 0.8123 3.1031 10 1 2.5064 -0.4220 2.6411 11 6 2.1975 -1.2688 0.0006 12 6 2.3255 -1.7755 -1.4129 13 6 1.8470 -1.0170 -2.4652 14 6 1.9602 -1.4840 -3.7612 15 6 2.5552 -2.7078 -4.0055 16 6 3.0375 -3.4640 -2.9539 17 6 2.9250 -2.9966 -1.6576 18 6 3.4510 -3.8210 -0.5111 19 7 2.3349 -4.4911 0.1609 20 6 2.5679 -5.2875 1.2230 21 8 3.7016 -5.4498 1.6220 22 6 1.4198 -5.9763 1.9146 23 1 0.8540 -6.5872 1.2111 24 6 0.4954 -4.9442 2.6145 25 6 -0.2051 -5.7541 3.7249 26 6 0.7057 -6.9553 4.0340 27 1 1.0265 -6.9234 5.0752 28 9 0.0253 -8.1507 3.7790 29 6 1.9275 -6.8336 3.1001 30 1 -0.3633 -0.0858 1.0241 31 1 -0.3633 0.9298 -0.4377 32 1 -0.3634 -0.8439 -0.5864 33 1 5.0734 2.2901 0.7939 34 1 1.6569 -2.0002 0.6012 35 1 3.1906 -1.1148 0.4227 36 1 1.3826 -0.0609 -2.2744 37 1 1.5841 -0.8927 -4.5829 38 1 2.6432 -3.0729 -5.0182 39 1 3.5019 -4.4202 -3.1448 40 1 3.9648 -3.1717 0.1977 41 1 4.1480 -4.5682 -0.8906 42 1 1.4282 -4.3616 -0.1585 43 1 -0.2372 -4.5495 1.9104 44 1 1.0851 -4.1356 3.0463 45 1 -1.1772 -6.1027 3.3762 46 1 -0.3271 -5.1390 4.6165 47 1 2.7488 -6.3300 3.6101 48 1 2.2418 -7.8178 2.7528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570027066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:47 Heat of formation + Delta-G solvation = -63.382081 kcal Electronic energy + Delta-G solvation = -29647.699847 eV Core-core repulsion = 25616.296360 eV Total energy + Delta-G solvation = -4031.403487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.60203 -41.30948 -40.37212 -37.79838 -37.55537 -36.07494 -33.89057 -32.70165 -31.89169 -30.24062 -29.50588 -28.43149 -27.64407 -26.71061 -23.70039 -23.29721 -22.39248 -21.78145 -21.51742 -20.95365 -18.98800 -18.69531 -17.71867 -17.38464 -17.25148 -16.97822 -16.67656 -16.43468 -15.97871 -15.67819 -15.47750 -15.41180 -15.17425 -15.03709 -14.69510 -14.54291 -14.35757 -14.27585 -13.87268 -13.59982 -13.54573 -13.45346 -13.11003 -13.00648 -12.71024 -12.57858 -12.41331 -12.25386 -12.17085 -11.96030 -11.82693 -11.74703 -11.72265 -11.62485 -11.61114 -10.98131 -10.75119 -10.20371 -9.67292 -9.43893 -8.90693 -8.24504 -5.57976 0.36086 0.60159 1.21309 1.31967 1.39663 1.53504 2.17601 2.33453 2.95802 2.98400 3.24948 3.32899 3.37390 3.61410 3.68465 3.82234 3.97627 4.09377 4.11553 4.18871 4.29071 4.29887 4.35757 4.36639 4.38529 4.46668 4.56464 4.59136 4.64397 4.68768 4.74250 4.84027 4.90715 4.99066 5.03164 5.08223 5.11318 5.14760 5.15923 5.27909 5.31031 5.32977 5.60996 5.72080 5.78690 5.95306 6.11052 6.19583 6.47555 6.91897 7.15432 7.58397 7.98432 8.95211 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.004058 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.970911 B = 6898.762192 C = 8055.377388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.618 5.618 3 C -0.249 4.249 4 H 0.054 0.946 5 C -0.016 4.016 6 N -0.944 5.944 7 Si 0.927 3.073 8 H -0.287 1.287 9 H -0.309 1.309 10 H -0.257 1.257 11 C 0.171 3.829 12 C -0.089 4.089 13 C -0.107 4.107 14 C -0.119 4.119 15 C -0.126 4.126 16 C -0.101 4.101 17 C -0.122 4.122 18 C 0.167 3.833 19 N -0.710 5.710 20 C 0.517 3.483 21 O -0.584 6.584 22 C -0.109 4.109 23 H 0.129 0.871 24 C -0.114 4.114 25 C -0.142 4.142 26 C 0.085 3.915 27 H 0.105 0.895 28 F -0.223 7.223 29 C -0.132 4.132 30 H 0.018 0.982 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.414 0.586 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 -19.665 -1.205 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.342 5.342 3 C -0.379 4.379 4 H 0.072 0.928 5 C -0.213 4.213 6 N -0.589 5.589 7 Si 0.757 3.243 8 H -0.216 1.216 9 H -0.238 1.238 10 H -0.181 1.181 11 C 0.046 3.954 12 C -0.091 4.091 13 C -0.126 4.126 14 C -0.137 4.137 15 C -0.144 4.144 16 C -0.120 4.120 17 C -0.123 4.123 18 C 0.044 3.956 19 N -0.361 5.361 20 C 0.305 3.695 21 O -0.464 6.464 22 C -0.130 4.130 23 H 0.147 0.853 24 C -0.152 4.152 25 C -0.180 4.180 26 C 0.048 3.952 27 H 0.122 0.878 28 F -0.204 7.204 29 C -0.170 4.170 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.251 0.749 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.889 -19.711 -0.874 22.069 hybrid contribution 0.594 0.342 0.668 0.957 sum -9.295 -19.368 -0.206 21.484 Atomic orbital electron populations 1.21208 0.81636 1.00556 0.98639 1.44119 1.02499 1.00964 1.86628 1.18740 1.02626 0.90534 1.25950 0.92811 1.25844 0.97199 0.98178 1.00032 1.69967 1.08305 1.38303 1.42341 0.86151 0.78130 0.78572 0.81409 1.21584 1.23830 1.18099 1.20145 0.95522 0.87271 0.92473 1.20748 0.97181 0.93781 0.97433 1.21171 0.99478 0.99356 0.92549 1.21477 0.99130 0.96826 0.96314 1.21383 0.98578 0.94443 0.99981 1.21209 0.99285 1.00451 0.91020 1.19629 1.02539 0.95096 0.95044 1.19990 0.89185 0.94617 0.91836 1.46007 1.11165 1.47479 1.31473 1.21048 0.90571 0.78384 0.79490 1.90686 1.25634 1.64273 1.65779 1.22400 0.94485 0.97983 0.98116 0.85275 1.22441 0.97986 0.96662 0.98091 1.22752 0.99448 0.95722 1.00068 1.22329 0.91204 0.80659 1.00960 0.87758 1.92803 1.81972 1.49685 1.95958 1.22820 0.97662 1.01082 0.95438 0.96379 0.93576 0.92375 0.92982 0.91288 0.94240 0.86867 0.84614 0.83132 0.83757 0.94090 0.89903 0.74918 0.88376 0.92209 0.88776 0.88763 0.90065 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.37 9.98 127.77 1.27 5.64 16 2 N -0.62 -27.56 1.37 -731.29 -1.00 -28.56 16 3 C -0.25 -13.65 9.53 84.03 0.80 -12.85 16 4 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 5 C -0.02 -0.94 5.29 84.86 0.45 -0.49 16 6 N -0.94 -59.08 13.97 21.65 0.30 -58.78 16 7 Si 0.93 47.24 24.89 68.60 1.71 48.95 16 8 H -0.29 -14.62 6.66 99.48 0.66 -13.96 16 9 H -0.31 -16.08 7.11 99.48 0.71 -15.38 16 10 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 11 C 0.17 7.01 3.55 85.63 0.30 7.31 16 12 C -0.09 -3.18 5.87 -19.87 -0.12 -3.29 16 13 C -0.11 -3.79 9.13 22.27 0.20 -3.59 16 14 C -0.12 -3.33 10.05 22.27 0.22 -3.11 16 15 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 16 C -0.10 -2.47 9.67 22.27 0.22 -2.25 16 17 C -0.12 -3.66 5.25 -19.87 -0.10 -3.76 16 18 C 0.17 4.98 5.16 85.63 0.44 5.42 16 19 N -0.71 -17.39 5.03 -466.79 -2.35 -19.74 16 20 C 0.52 13.57 7.15 87.66 0.63 14.19 16 21 O -0.58 -20.44 15.72 -3.02 -0.05 -20.49 16 22 C -0.11 -1.99 3.30 -10.14 -0.03 -2.02 16 23 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 24 C -0.11 -1.83 6.28 31.79 0.20 -1.63 16 25 C -0.14 -1.88 6.65 31.32 0.21 -1.67 16 26 C 0.08 1.31 4.68 31.32 0.15 1.45 16 27 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 28 F -0.22 -4.25 17.05 44.97 0.77 -3.48 16 29 C -0.13 -2.50 5.68 31.66 0.18 -2.32 16 30 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 1.63 8.00 -2.38 -0.02 1.61 16 32 H 0.06 1.71 8.11 -2.39 -0.02 1.69 16 33 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.07 2.49 7.54 -2.39 -0.02 2.47 16 35 H 0.04 1.91 2.68 -2.39 -0.01 1.90 16 36 H 0.11 4.55 6.21 -2.91 -0.02 4.54 16 37 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.14 2.70 8.02 -2.91 -0.02 2.67 16 40 H 0.04 1.53 7.26 -2.39 -0.02 1.51 16 41 H 0.08 2.29 7.98 -2.39 -0.02 2.27 16 42 H 0.41 8.06 8.46 -92.71 -0.78 7.28 16 43 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 1.21 8.05 -2.39 -0.02 1.19 16 45 H 0.09 1.08 8.02 -2.39 -0.02 1.07 16 46 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.08 1.82 7.44 -2.38 -0.02 1.80 16 48 H 0.08 1.56 8.11 -2.39 -0.02 1.54 16 Total: -1.00 -72.33 385.23 4.76 -67.57 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.14 Total: 20.20 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.24 Total: -5.67 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -3.04 Total: -107.07 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.77 Total: -3.48 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.71 Total: 48.95 kcal Total: -72.33 4.76 -67.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570027066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.187 kcal (2) G-P(sol) polarization free energy of solvation -72.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds