Wall clock time and date at job start Tue Mar 31 2020 17:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47446 * 2 1 4 4 C 1.53001 * 109.47215 * 120.00231 * 2 1 3 5 5 N 1.46501 * 109.47301 * 174.99668 * 4 2 1 6 6 C 1.34780 * 120.00006 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99509 * 4.89107 * 6 5 4 8 8 C 1.50694 * 119.99744 * 184.89198 * 6 5 4 9 9 C 1.50697 * 112.85040 * 300.67813 * 8 6 5 10 10 C 1.38242 * 119.97612 * 114.15109 * 9 8 6 11 11 C 1.38202 * 120.02694 * 179.97438 * 10 9 8 12 12 C 1.38457 * 119.97066 * 0.02562 * 11 10 9 13 13 F 1.35105 * 120.02380 * 179.97438 * 12 11 10 14 14 C 1.38454 * 119.95379 * 359.97438 * 12 11 10 15 15 C 1.38203 * 119.97499 * 0.02562 * 14 12 11 16 16 C 1.53779 * 113.61734 * 71.87628 * 8 6 5 17 17 C 1.53959 * 87.01778 * 89.22680 * 16 8 6 18 18 C 1.53774 * 87.11242 * 25.36354 * 17 16 8 19 19 N 1.46503 * 109.46783 * 239.99867 * 2 1 3 20 20 C 1.46502 * 120.00243 * 299.99923 * 19 2 1 21 21 C 1.36941 * 120.00200 * 120.00390 * 19 2 1 22 22 H 1.08003 * 119.99714 * 24.08690 * 21 19 2 23 23 C 1.38808 * 120.00195 * 204.08735 * 21 19 2 24 24 N 1.31621 * 119.99733 * 9.09290 * 23 21 19 25 25 Si 1.86793 * 119.99892 * 189.09346 * 23 21 19 26 26 H 1.48501 * 109.47239 * 90.00204 * 25 23 21 27 27 H 1.48508 * 109.47097 * 209.99727 * 25 23 21 28 28 H 1.48495 * 109.47527 * 329.99886 * 25 23 21 29 29 H 1.08995 * 109.46738 * 300.00386 * 1 2 3 30 30 H 1.09000 * 109.46899 * 60.00165 * 1 2 3 31 31 H 1.08998 * 109.47446 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47032 * 54.99091 * 4 2 1 33 33 H 1.09001 * 109.46934 * 294.99546 * 4 2 1 34 34 H 0.96995 * 119.99564 * 359.97438 * 5 4 2 35 35 H 1.08000 * 119.98425 * 359.97438 * 10 9 8 36 36 H 1.07990 * 120.00917 * 180.27801 * 11 10 9 37 37 H 1.08002 * 120.01755 * 180.02562 * 14 12 11 38 38 H 1.08001 * 119.98662 * 180.02562 * 15 14 12 39 39 H 1.08997 * 113.61500 * 203.74381 * 16 8 6 40 40 H 1.09001 * 113.61374 * 334.65096 * 16 8 6 41 41 H 1.08998 * 113.53778 * 270.81008 * 17 16 8 42 42 H 1.08996 * 113.73924 * 139.94616 * 17 16 8 43 43 H 1.09001 * 113.61440 * 220.08843 * 18 17 16 44 44 H 1.09003 * 113.69202 * 89.19598 * 18 17 16 45 45 H 1.09004 * 109.47107 * 95.01030 * 20 19 2 46 46 H 1.08997 * 109.47500 * 215.01092 * 20 19 2 47 47 H 1.09005 * 109.47005 * 335.01789 * 20 19 2 48 48 H 0.97001 * 119.99478 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1731 -1.4285 2.1911 7 8 3.5659 -1.9609 3.0960 8 6 5.6800 -1.4398 2.1855 9 6 6.2557 -2.1083 0.9638 10 6 6.9776 -1.3675 0.0466 11 6 7.5064 -1.9795 -1.0739 12 6 7.3125 -3.3352 -1.2781 13 9 7.8285 -3.9345 -2.3734 14 6 6.5893 -4.0762 -0.3589 15 6 6.0614 -3.4620 0.7610 16 6 6.3076 -0.0696 2.4913 17 6 6.2590 -0.4689 3.9774 18 6 6.2972 -1.9319 3.5054 19 7 2.0183 -0.6907 -1.1962 20 6 1.6643 -2.0933 -1.4280 21 6 2.8056 -0.0253 -2.0977 22 1 3.3826 0.8313 -1.7817 23 6 2.8621 -0.4516 -3.4174 24 7 2.0299 -1.3768 -3.8463 25 14 4.1192 0.2876 -4.5847 26 1 5.3709 -0.5098 -4.5338 27 1 3.5789 0.2730 -5.9679 28 1 4.4071 1.6872 -4.1805 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7517 -0.1583 2.1369 34 1 3.9823 -0.4629 0.4315 35 1 7.1284 -0.3100 0.2060 36 1 8.0742 -1.4015 -1.7879 37 1 6.4377 -5.1337 -0.5169 38 1 5.4975 -4.0399 1.4783 39 1 7.3196 0.0437 2.1026 40 1 5.6609 0.7720 2.2430 41 1 5.3274 -0.1938 4.4718 42 1 7.1421 -0.1689 4.5415 43 1 5.6422 -2.5916 4.0745 44 1 7.3058 -2.3300 3.3940 45 1 0.7877 -2.1448 -2.0738 46 1 2.4993 -2.6043 -1.9074 47 1 1.4425 -2.5742 -0.4753 48 1 2.0692 -1.6745 -4.7686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570728035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:57 Heat of formation + Delta-G solvation = -15.975661 kcal Electronic energy + Delta-G solvation = -30492.569231 eV Core-core repulsion = 26463.221441 eV Total energy + Delta-G solvation = -4029.347790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.74390 -40.92265 -38.55834 -37.37382 -36.39448 -33.77979 -32.02897 -31.11466 -30.76729 -29.32808 -26.74274 -26.02279 -25.92557 -24.86384 -23.06087 -22.77278 -21.85647 -21.12865 -19.49619 -18.56359 -17.69287 -17.04646 -16.83626 -16.16617 -15.92885 -15.59199 -15.42267 -15.21637 -14.86916 -14.37527 -14.26420 -13.76736 -13.52242 -13.49495 -13.22807 -12.82861 -12.76338 -12.66853 -12.46041 -12.29377 -12.09184 -11.99538 -11.78047 -11.43558 -11.07592 -11.02178 -10.96609 -10.83635 -10.76551 -10.51723 -10.40510 -10.32028 -10.29241 -9.91845 -9.79283 -9.56488 -9.00852 -8.59860 -8.54066 -8.37828 -6.79122 -5.75177 -3.24322 1.19578 1.32930 2.90372 3.34035 3.39034 3.42084 3.50957 3.69264 4.36373 4.41573 4.44196 4.55041 4.62904 4.73679 4.86676 4.97768 5.04736 5.30843 5.35859 5.41569 5.43069 5.50646 5.59229 5.60779 5.65719 5.81560 5.91361 5.95621 6.01529 6.02989 6.05152 6.08298 6.18526 6.21444 6.26248 6.30412 6.36853 6.42659 6.54001 6.75816 6.85270 6.87662 6.95974 7.03994 7.40550 7.70970 7.79548 8.02899 8.36260 8.61776 9.20310 9.82663 10.32644 11.28675 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008409 B = 0.006079 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.127146 B = 4604.845846 C = 6705.458570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.106 3.894 5 N -0.698 5.698 6 C 0.537 3.463 7 O -0.552 6.552 8 C -0.066 4.066 9 C -0.077 4.077 10 C -0.080 4.080 11 C -0.146 4.146 12 C 0.099 3.901 13 F -0.142 7.142 14 C -0.148 4.148 15 C -0.076 4.076 16 C -0.125 4.125 17 C -0.139 4.139 18 C -0.111 4.111 19 N -0.592 5.592 20 C 0.168 3.832 21 C -0.259 4.259 22 H 0.066 0.934 23 C 0.009 3.991 24 N -0.903 5.903 25 Si 0.898 3.102 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.411 0.589 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.028 0.972 46 H 0.040 0.960 47 H -0.004 1.004 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.817 0.240 11.777 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.085 0.915 4 C -0.020 4.020 5 N -0.347 5.347 6 C 0.322 3.678 7 O -0.431 6.431 8 C -0.069 4.069 9 C -0.077 4.077 10 C -0.098 4.098 11 C -0.165 4.165 12 C 0.080 3.920 13 F -0.121 7.121 14 C -0.167 4.167 15 C -0.094 4.094 16 C -0.163 4.163 17 C -0.176 4.176 18 C -0.149 4.149 19 N -0.315 5.315 20 C 0.023 3.977 21 C -0.388 4.388 22 H 0.084 0.916 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.728 3.272 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.247 0.753 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.014 0.986 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.359 -0.220 12.170 15.354 hybrid contribution 0.776 0.299 -1.650 1.847 sum 10.136 0.078 10.521 14.609 Atomic orbital electron populations 1.22182 0.97505 1.01350 1.00518 1.20612 0.92576 0.95448 0.86467 0.91456 1.21975 0.79565 1.01305 0.99179 1.45815 1.08207 1.58012 1.22689 1.19623 0.87876 0.78203 0.82106 1.90643 1.69584 1.45612 1.37218 1.20898 0.92772 0.98755 0.94488 1.19385 0.99040 0.93705 0.95576 1.20874 0.96265 1.00007 0.92609 1.21094 1.02986 0.93039 0.99370 1.17728 0.97892 0.91612 0.84761 1.91490 1.84931 1.83875 1.51796 1.21068 0.99899 1.00831 0.94894 1.20799 0.97756 0.94193 0.96649 1.23067 1.01448 0.94979 0.96798 1.22840 1.02461 0.96381 0.95950 1.22835 1.00804 0.97532 0.93719 1.43923 1.58088 1.07986 1.21496 1.20712 0.99750 0.83347 0.93878 1.19135 1.18652 1.12196 0.88862 0.91578 1.25034 0.98256 0.99022 0.96690 1.70053 1.36904 1.32183 1.15600 0.86359 0.81238 0.78825 0.80771 1.21356 1.21758 1.20485 0.94037 0.92225 0.93188 0.92082 0.92594 0.75280 0.84750 0.84787 0.84863 0.85264 0.88731 0.90592 0.89857 0.91057 0.89730 0.89472 0.95329 0.94119 0.98577 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.19 37.16 0.34 -2.39 16 2 C 0.16 2.99 2.87 -67.93 -0.19 2.80 16 3 H 0.07 1.26 7.87 -51.93 -0.41 0.85 16 4 C 0.11 1.85 4.94 -4.04 -0.02 1.83 16 5 N -0.70 -11.86 5.35 -60.29 -0.32 -12.18 16 6 C 0.54 8.77 6.36 -10.99 -0.07 8.70 16 7 O -0.55 -10.46 15.90 5.55 0.09 -10.37 16 8 C -0.07 -0.85 0.93 -156.00 -0.15 -1.00 16 9 C -0.08 -1.03 4.74 -104.62 -0.50 -1.53 16 10 C -0.08 -1.03 9.05 -39.59 -0.36 -1.39 16 11 C -0.15 -2.05 10.03 -39.51 -0.40 -2.44 16 12 C 0.10 1.50 7.30 -39.42 -0.29 1.22 16 13 F -0.14 -2.27 17.27 2.25 0.04 -2.23 16 14 C -0.15 -2.10 10.03 -39.51 -0.40 -2.49 16 15 C -0.08 -1.06 9.46 -39.59 -0.37 -1.43 16 16 C -0.13 -1.31 6.33 -25.83 -0.16 -1.48 16 17 C -0.14 -1.42 7.81 -25.83 -0.20 -1.62 16 18 C -0.11 -1.26 6.94 -25.92 -0.18 -1.44 16 19 N -0.59 -13.62 2.29 -173.48 -0.40 -14.02 16 20 C 0.17 4.04 7.99 59.85 0.48 4.51 16 21 C -0.26 -6.55 9.32 -15.06 -0.14 -6.69 16 22 H 0.07 1.61 7.82 -52.48 -0.41 1.20 16 23 C 0.01 0.24 5.18 -17.43 -0.09 0.15 16 24 N -0.90 -25.61 10.57 55.49 0.59 -25.02 16 25 Si 0.90 21.14 29.56 -169.99 -5.03 16.12 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.89 7.67 -51.93 -0.40 0.50 16 32 H 0.06 1.16 6.86 -51.93 -0.36 0.81 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.41 7.25 7.80 -40.82 -0.32 6.93 16 35 H 0.13 1.44 6.41 -52.49 -0.34 1.10 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.09 0.83 6.79 -51.93 -0.35 0.47 16 40 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 1.08 7.35 -51.93 -0.38 0.69 16 44 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 45 H 0.03 0.75 7.34 -51.93 -0.38 0.37 16 46 H 0.04 1.07 7.30 -51.93 -0.38 0.69 16 47 H 0.00 -0.09 6.53 -51.93 -0.34 -0.43 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -29.68 389.84 -9.27 -38.95 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.42 Total: 7.57 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.70 Total: -4.69 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.13 Total: -51.22 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.68 -9.27 -38.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570728035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.979 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds