Wall clock time and date at job start Tue Mar 31 2020 17:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47446 * 2 1 4 4 C 1.53001 * 109.47215 * 120.00231 * 2 1 3 5 5 N 1.46501 * 109.47301 * 174.99668 * 4 2 1 6 6 C 1.34780 * 120.00006 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99509 * 4.89107 * 6 5 4 8 8 C 1.50694 * 119.99744 * 184.89198 * 6 5 4 9 9 C 1.50697 * 112.85040 * 300.67813 * 8 6 5 10 10 C 1.38242 * 119.97612 * 114.15109 * 9 8 6 11 11 C 1.38202 * 120.02694 * 179.97438 * 10 9 8 12 12 C 1.38457 * 119.97066 * 0.02562 * 11 10 9 13 13 F 1.35105 * 120.02380 * 179.97438 * 12 11 10 14 14 C 1.38454 * 119.95379 * 359.97438 * 12 11 10 15 15 C 1.38203 * 119.97499 * 0.02562 * 14 12 11 16 16 C 1.53779 * 113.61734 * 71.87628 * 8 6 5 17 17 C 1.53959 * 87.01778 * 89.22680 * 16 8 6 18 18 C 1.53774 * 87.11242 * 25.36354 * 17 16 8 19 19 N 1.46503 * 109.46783 * 239.99867 * 2 1 3 20 20 C 1.46502 * 120.00243 * 299.99923 * 19 2 1 21 21 C 1.36941 * 120.00200 * 120.00390 * 19 2 1 22 22 H 1.08003 * 119.99714 * 24.08690 * 21 19 2 23 23 C 1.38808 * 120.00195 * 204.08735 * 21 19 2 24 24 N 1.31621 * 119.99733 * 9.09290 * 23 21 19 25 25 Si 1.86793 * 119.99892 * 189.09346 * 23 21 19 26 26 H 1.48501 * 109.47239 * 90.00204 * 25 23 21 27 27 H 1.48508 * 109.47097 * 209.99727 * 25 23 21 28 28 H 1.48495 * 109.47527 * 329.99886 * 25 23 21 29 29 H 1.08995 * 109.46738 * 300.00386 * 1 2 3 30 30 H 1.09000 * 109.46899 * 60.00165 * 1 2 3 31 31 H 1.08998 * 109.47446 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47032 * 54.99091 * 4 2 1 33 33 H 1.09001 * 109.46934 * 294.99546 * 4 2 1 34 34 H 0.96995 * 119.99564 * 359.97438 * 5 4 2 35 35 H 1.08000 * 119.98425 * 359.97438 * 10 9 8 36 36 H 1.07990 * 120.00917 * 180.27801 * 11 10 9 37 37 H 1.08002 * 120.01755 * 180.02562 * 14 12 11 38 38 H 1.08001 * 119.98662 * 180.02562 * 15 14 12 39 39 H 1.08997 * 113.61500 * 203.74381 * 16 8 6 40 40 H 1.09001 * 113.61374 * 334.65096 * 16 8 6 41 41 H 1.08998 * 113.53778 * 270.81008 * 17 16 8 42 42 H 1.08996 * 113.73924 * 139.94616 * 17 16 8 43 43 H 1.09001 * 113.61440 * 220.08843 * 18 17 16 44 44 H 1.09003 * 113.69202 * 89.19598 * 18 17 16 45 45 H 1.09004 * 109.47107 * 95.01030 * 20 19 2 46 46 H 1.08997 * 109.47500 * 215.01092 * 20 19 2 47 47 H 1.09005 * 109.47005 * 335.01789 * 20 19 2 48 48 H 0.97001 * 119.99478 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1731 -1.4285 2.1911 7 8 3.5659 -1.9609 3.0960 8 6 5.6800 -1.4398 2.1855 9 6 6.2557 -2.1083 0.9638 10 6 6.9776 -1.3675 0.0466 11 6 7.5064 -1.9795 -1.0739 12 6 7.3125 -3.3352 -1.2781 13 9 7.8285 -3.9345 -2.3734 14 6 6.5893 -4.0762 -0.3589 15 6 6.0614 -3.4620 0.7610 16 6 6.3076 -0.0696 2.4913 17 6 6.2590 -0.4689 3.9774 18 6 6.2972 -1.9319 3.5054 19 7 2.0183 -0.6907 -1.1962 20 6 1.6643 -2.0933 -1.4280 21 6 2.8056 -0.0253 -2.0977 22 1 3.3826 0.8313 -1.7817 23 6 2.8621 -0.4516 -3.4174 24 7 2.0299 -1.3768 -3.8463 25 14 4.1192 0.2876 -4.5847 26 1 5.3709 -0.5098 -4.5338 27 1 3.5789 0.2730 -5.9679 28 1 4.4071 1.6872 -4.1805 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7517 -0.1583 2.1369 34 1 3.9823 -0.4629 0.4315 35 1 7.1284 -0.3100 0.2060 36 1 8.0742 -1.4015 -1.7879 37 1 6.4377 -5.1337 -0.5169 38 1 5.4975 -4.0399 1.4783 39 1 7.3196 0.0437 2.1026 40 1 5.6609 0.7720 2.2430 41 1 5.3274 -0.1938 4.4718 42 1 7.1421 -0.1689 4.5415 43 1 5.6422 -2.5916 4.0745 44 1 7.3058 -2.3300 3.3940 45 1 0.7877 -2.1448 -2.0738 46 1 2.4993 -2.6043 -1.9074 47 1 1.4425 -2.5742 -0.4753 48 1 2.0692 -1.6745 -4.7686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570728035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:56 Heat of formation + Delta-G solvation = -30.909794 kcal Electronic energy + Delta-G solvation = -30493.216824 eV Core-core repulsion = 26463.221441 eV Total energy + Delta-G solvation = -4029.995383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.92939 -42.01397 -39.77933 -38.68540 -37.79121 -35.39465 -33.71251 -32.17351 -31.85564 -31.10501 -28.02610 -27.98016 -26.80399 -26.05769 -24.88282 -23.83983 -22.97136 -22.19658 -21.06833 -19.82000 -18.85156 -18.77103 -18.06851 -17.29202 -17.14432 -17.08301 -16.74666 -16.61027 -16.07489 -15.82592 -15.51086 -15.21733 -14.77770 -14.60097 -14.52879 -14.42247 -14.31502 -13.86772 -13.67658 -13.50953 -13.47338 -13.07229 -13.05879 -12.83899 -12.77440 -12.68154 -12.48030 -12.28188 -12.09881 -12.05390 -11.84327 -11.78803 -11.50657 -11.43798 -11.23035 -10.83191 -10.60428 -10.07451 -9.92871 -9.51277 -8.74540 -7.77070 -5.26464 0.09138 0.26298 1.47885 1.49136 1.56311 1.63932 2.28575 2.52625 2.58797 3.27652 3.39322 3.45322 3.60007 3.65069 3.67896 3.79702 3.86874 3.94074 3.98064 4.07522 4.29977 4.37937 4.43613 4.51376 4.60906 4.72859 4.76773 4.81746 4.84742 4.93025 4.93798 4.98471 5.04273 5.06538 5.11723 5.14308 5.16773 5.24288 5.26229 5.37732 5.43456 5.47007 5.50441 5.61872 5.70439 5.75744 5.88751 6.37036 6.68114 7.19253 7.30118 7.90542 8.36991 9.26152 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008409 B = 0.006079 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.127146 B = 4604.845846 C = 6705.458570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 H 0.077 0.923 4 C 0.115 3.885 5 N -0.700 5.700 6 C 0.536 3.464 7 O -0.581 6.581 8 C -0.070 4.070 9 C -0.077 4.077 10 C -0.077 4.077 11 C -0.153 4.153 12 C 0.074 3.926 13 F -0.152 7.152 14 C -0.156 4.156 15 C -0.087 4.087 16 C -0.116 4.116 17 C -0.133 4.133 18 C -0.108 4.108 19 N -0.600 5.600 20 C 0.191 3.809 21 C -0.248 4.248 22 H 0.081 0.919 23 C -0.048 4.048 24 N -0.939 5.939 25 Si 0.954 3.046 26 H -0.290 1.290 27 H -0.306 1.306 28 H -0.260 1.260 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.409 0.591 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.000 1.000 46 H 0.009 0.991 47 H 0.013 0.987 48 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.294 2.382 13.375 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.095 0.905 4 C -0.010 4.010 5 N -0.349 5.349 6 C 0.323 3.677 7 O -0.462 6.462 8 C -0.073 4.073 9 C -0.077 4.077 10 C -0.094 4.094 11 C -0.172 4.172 12 C 0.055 3.945 13 F -0.131 7.131 14 C -0.174 4.174 15 C -0.105 4.105 16 C -0.154 4.154 17 C -0.170 4.170 18 C -0.146 4.146 19 N -0.323 5.323 20 C 0.045 3.955 21 C -0.378 4.378 22 H 0.099 0.901 23 C -0.243 4.243 24 N -0.587 5.587 25 Si 0.784 3.216 26 H -0.217 1.217 27 H -0.233 1.233 28 H -0.184 1.184 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.245 0.755 35 H 0.180 0.820 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.019 0.981 46 H 0.028 0.972 47 H 0.032 0.968 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.844 1.955 13.809 17.667 hybrid contribution 0.268 -0.380 -2.045 2.097 sum 11.112 1.575 11.765 16.259 Atomic orbital electron populations 1.22071 0.96228 1.01095 1.01394 1.20792 0.93508 0.95591 0.85125 0.90493 1.21790 0.80057 1.00259 0.98937 1.45849 1.07942 1.58278 1.22866 1.20172 0.89341 0.77032 0.81160 1.90630 1.70646 1.46665 1.38242 1.20923 0.90324 1.01103 0.95000 1.19519 0.98873 0.93462 0.95873 1.21172 0.95348 1.01221 0.91693 1.21379 1.03036 0.92673 1.00087 1.18040 0.98963 0.92516 0.84974 1.91458 1.85196 1.84144 1.52320 1.21233 0.99792 1.01516 0.94900 1.20920 0.98028 0.94868 0.96693 1.23141 1.02448 0.93079 0.96703 1.22793 1.02895 0.95176 0.96114 1.22879 1.01151 0.98149 0.92433 1.44049 1.58226 1.07687 1.22309 1.20306 0.97182 0.84286 0.93698 1.19534 1.17915 1.11547 0.88851 0.90093 1.25715 1.00180 1.00007 0.98444 1.70230 1.39001 1.34217 1.15219 0.85446 0.78923 0.79020 0.78242 1.21691 1.23306 1.18413 0.90432 0.93995 0.94053 0.93894 0.90643 0.75498 0.81965 0.83368 0.83947 0.85285 0.86201 0.90541 0.91393 0.88479 0.91635 0.87583 0.98143 0.97201 0.96820 0.94821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.19 71.98 0.66 -4.29 16 2 C 0.16 5.67 2.87 44.99 0.13 5.80 16 3 H 0.08 2.66 7.87 -2.39 -0.02 2.64 16 4 C 0.12 3.83 4.94 86.38 0.43 4.26 16 5 N -0.70 -22.62 5.35 -463.05 -2.48 -25.10 16 6 C 0.54 16.75 6.36 87.65 0.56 17.30 16 7 O -0.58 -21.59 15.90 -3.04 -0.05 -21.64 16 8 C -0.07 -1.66 0.93 -53.15 -0.05 -1.71 16 9 C -0.08 -1.93 4.74 -19.86 -0.09 -2.02 16 10 C -0.08 -1.78 9.05 22.26 0.20 -1.58 16 11 C -0.15 -4.04 10.03 22.31 0.22 -3.81 16 12 C 0.07 2.22 7.30 22.37 0.16 2.38 16 13 F -0.15 -4.88 17.27 44.97 0.78 -4.10 16 14 C -0.16 -4.40 10.03 22.31 0.22 -4.17 16 15 C -0.09 -2.38 9.46 22.26 0.21 -2.17 16 16 C -0.12 -2.01 6.33 31.18 0.20 -1.81 16 17 C -0.13 -2.29 7.81 31.18 0.24 -2.05 16 18 C -0.11 -2.21 6.94 31.12 0.22 -2.00 16 19 N -0.60 -27.22 2.29 -702.76 -1.61 -28.83 16 20 C 0.19 9.33 7.99 127.77 1.02 10.35 16 21 C -0.25 -12.29 9.32 84.03 0.78 -11.50 16 22 H 0.08 3.73 7.82 -2.91 -0.02 3.71 16 23 C -0.05 -2.58 5.18 84.86 0.44 -2.14 16 24 N -0.94 -54.56 10.57 21.65 0.23 -54.33 16 25 Si 0.95 43.27 29.56 68.60 2.03 45.29 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.31 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.43 7.67 -2.39 -0.02 1.42 16 32 H 0.04 1.59 6.86 -2.39 -0.02 1.58 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.41 13.59 7.80 -92.71 -0.72 12.87 16 35 H 0.16 2.79 6.41 -2.91 -0.02 2.77 16 36 H 0.15 3.39 8.06 -2.92 -0.02 3.36 16 37 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 38 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.12 1.50 6.79 -2.39 -0.02 1.48 16 40 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.60 7.35 -2.39 -0.02 1.59 16 44 H 0.11 1.76 8.09 -2.39 -0.02 1.74 16 45 H 0.00 0.02 7.34 -2.38 -0.02 0.00 16 46 H 0.01 0.51 7.30 -2.39 -0.02 0.49 16 47 H 0.01 0.60 6.53 -2.38 -0.02 0.58 16 48 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -64.83 389.84 4.70 -60.13 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.24 Total: 27.74 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 5.55 Total: 0.84 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -3.85 Total: -108.26 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.78 Total: -4.10 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.83 4.70 -60.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570728035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.222 kcal (2) G-P(sol) polarization free energy of solvation -64.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds