Wall clock time and date at job start Tue Mar 31 2020 17:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47101 * 2 1 4 4 C 1.50701 * 109.46799 * 119.99611 * 2 1 3 5 5 H 1.08005 * 120.00210 * 31.70115 * 4 2 1 6 6 C 1.37874 * 120.00078 * 211.69259 * 4 2 1 7 7 N 1.31517 * 119.99765 * 353.19629 * 6 4 2 8 8 Si 1.86803 * 120.00207 * 173.19147 * 6 4 2 9 9 H 1.48499 * 109.47144 * 60.00001 * 8 6 4 10 10 H 1.48500 * 109.46794 * 300.00383 * 8 6 4 11 11 H 1.48503 * 109.47316 * 180.02562 * 8 6 4 12 12 C 1.50699 * 109.47327 * 239.99496 * 2 1 3 13 13 O 1.21277 * 120.00278 * 239.99854 * 12 2 1 14 14 N 1.34775 * 119.99454 * 60.00002 * 12 2 1 15 15 C 1.46507 * 119.99867 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47087 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.50639 * 56.35508 * 16 15 14 18 18 C 1.53039 * 109.50378 * 296.28044 * 16 15 14 19 19 N 1.46852 * 109.52068 * 299.23741 * 18 16 15 20 20 C 1.46839 * 111.20194 * 298.25749 * 19 18 16 21 21 C 1.53037 * 109.52120 * 61.74054 * 20 19 18 22 22 C 1.53118 * 109.50289 * 176.47651 * 16 15 14 23 23 H 1.08995 * 109.52584 * 182.19106 * 22 16 15 24 24 C 1.50703 * 109.52287 * 302.38392 * 22 16 15 25 25 C 1.38244 * 119.97343 * 79.46377 * 24 22 16 26 26 C 1.38206 * 120.02085 * 179.72785 * 25 24 22 27 27 C 1.38464 * 119.97264 * 0.56738 * 26 25 24 28 28 F 1.35095 * 120.02320 * 179.68181 * 27 26 25 29 29 C 1.38453 * 119.94967 * 359.70620 * 27 26 25 30 30 C 1.38197 * 119.97536 * 0.02562 * 29 27 26 31 31 H 1.09004 * 109.47656 * 294.97345 * 1 2 3 32 32 H 1.09001 * 109.47436 * 54.97756 * 1 2 3 33 33 H 1.09002 * 109.47368 * 174.97955 * 1 2 3 34 34 H 0.96997 * 120.00016 * 3.53915 * 7 6 4 35 35 H 0.97003 * 120.00416 * 0.02562 * 14 12 2 36 36 H 1.09000 * 109.46884 * 300.00711 * 15 14 12 37 37 H 1.08996 * 109.46883 * 60.00474 * 15 14 12 38 38 H 1.08994 * 109.46730 * 59.25434 * 18 16 15 39 39 H 1.08999 * 109.46343 * 179.23766 * 18 16 15 40 40 H 1.00898 * 111.00055 * 62.35833 * 19 18 16 41 41 H 1.08996 * 109.46560 * 181.75786 * 20 19 18 42 42 H 1.08999 * 109.46356 * 301.74249 * 20 19 18 43 43 H 1.09004 * 109.50207 * 60.76732 * 21 20 19 44 44 H 1.09008 * 109.50277 * 180.84004 * 21 20 19 45 45 H 1.07999 * 119.99052 * 359.97438 * 25 24 22 46 46 H 1.07996 * 120.01332 * 180.29785 * 26 25 24 47 47 H 1.07998 * 120.01251 * 179.97438 * 29 27 26 48 48 H 1.08003 * 119.99144 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 1.4620 -1.5232 1.6555 6 6 3.2199 -0.3227 1.8138 7 7 3.9804 0.5736 1.2240 8 14 3.7488 -1.0706 3.4418 9 1 3.8872 -2.5413 3.2893 10 1 2.7268 -0.7745 4.4778 11 1 5.0524 -0.4902 3.8530 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.1956 -0.9404 -3.6507 16 6 1.6860 -0.2189 -4.8999 17 1 1.9946 0.8260 -4.8681 18 6 0.1585 -0.2991 -4.9489 19 7 -0.2573 -1.7061 -5.0121 20 6 0.2500 -2.3557 -6.2274 21 6 1.7802 -2.3368 -6.2166 22 6 2.2676 -0.8868 -6.1490 23 1 1.9360 -0.3493 -7.0373 24 6 3.7728 -0.8642 -6.0776 25 6 4.4413 -1.7915 -5.3003 26 6 5.8219 -1.7752 -5.2386 27 6 6.5348 -0.8222 -5.9463 28 9 7.8840 -0.8013 -5.8816 29 6 5.8638 0.1095 -6.7199 30 6 4.4835 0.0878 -6.7845 31 1 -0.3634 0.4339 0.9316 32 1 -0.3634 0.5898 -0.8416 33 1 -0.3634 -1.0237 -0.0899 34 1 3.6819 0.9997 0.4053 35 1 1.1494 0.5388 -2.5435 36 1 3.2856 -0.9400 -3.6504 37 1 1.8326 -1.9681 -3.6508 38 1 -0.2584 0.1629 -4.0540 39 1 -0.2047 0.2267 -5.8319 40 1 0.0341 -2.2067 -4.1860 41 1 -0.1002 -3.3873 -6.2611 42 1 -0.1133 -1.8199 -7.1043 43 1 2.1448 -2.8842 -5.3473 44 1 2.1564 -2.8057 -7.1259 45 1 3.8848 -2.5315 -4.7443 46 1 6.3443 -2.5028 -4.6352 47 1 6.4188 0.8536 -7.2719 48 1 3.9598 0.8143 -7.3882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575914132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:40 Heat of formation + Delta-G solvation = -72.528616 kcal Electronic energy + Delta-G solvation = -29776.861220 eV Core-core repulsion = 25745.061109 eV Total energy + Delta-G solvation = -4031.800110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.96084 -40.75801 -38.71896 -38.05475 -34.20289 -33.68786 -33.29335 -31.39540 -31.20760 -30.35081 -29.10597 -26.14420 -24.61337 -24.18979 -23.59598 -22.73938 -22.10499 -21.41581 -19.58549 -19.18391 -17.84587 -16.91493 -16.64603 -16.37137 -15.76673 -15.66983 -15.51783 -15.46972 -15.01620 -14.78916 -14.16845 -14.01541 -13.77785 -13.68896 -13.66153 -13.56272 -13.16496 -12.96873 -12.67177 -12.63956 -12.25884 -12.07183 -11.87053 -11.61126 -11.47633 -11.27022 -11.18202 -11.07954 -10.98292 -10.71980 -10.68685 -10.47999 -10.10165 -9.75693 -9.23798 -8.68631 -8.64184 -8.63450 -8.52463 -8.27767 -8.20925 -6.37284 -4.04819 0.98367 1.08909 3.39605 3.46854 3.51567 3.68836 3.90453 3.96850 4.10679 4.15401 4.29531 4.48544 4.57820 4.65026 4.69603 4.75804 4.84532 4.98112 5.03941 5.09341 5.12448 5.27754 5.38174 5.40807 5.41884 5.56811 5.64525 5.69595 5.74629 5.84173 5.87469 5.89374 5.98107 6.03410 6.06939 6.12191 6.16598 6.22070 6.37950 6.43977 6.54639 6.74731 6.86852 7.05294 7.13616 7.18730 7.22782 7.96089 8.41625 8.47962 8.86885 9.43896 9.65860 11.03198 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.004007 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.470788 B = 6986.482316 C = 9153.945830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.007 3.993 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.053 0.947 6 C 0.026 3.974 7 N -0.904 5.904 8 Si 1.070 2.930 9 H -0.287 1.287 10 H -0.287 1.287 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.529 6.529 14 N -0.751 5.751 15 C 0.117 3.883 16 C -0.131 4.131 17 H 0.083 0.917 18 C 0.064 3.936 19 N -0.685 5.685 20 C 0.058 3.942 21 C -0.158 4.158 22 C -0.034 4.034 23 H 0.084 0.916 24 C -0.089 4.089 25 C -0.080 4.080 26 C -0.148 4.148 27 C 0.094 3.906 28 F -0.142 7.142 29 C -0.154 4.154 30 C -0.088 4.088 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.042 0.958 34 H 0.265 0.735 35 H 0.389 0.611 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.347 0.653 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.133 0.867 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 -0.625 -20.259 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.015 4.015 3 H 0.075 0.925 4 C -0.607 4.607 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.540 5.540 8 Si 0.898 3.102 9 H -0.214 1.214 10 H -0.213 1.213 11 H -0.208 1.208 12 C 0.293 3.707 13 O -0.403 6.403 14 N -0.406 5.406 15 C -0.007 4.007 16 C -0.152 4.152 17 H 0.101 0.899 18 C -0.066 4.066 19 N -0.315 5.315 20 C -0.072 4.072 21 C -0.197 4.197 22 C -0.053 4.053 23 H 0.102 0.898 24 C -0.089 4.089 25 C -0.098 4.098 26 C -0.167 4.167 27 C 0.075 3.925 28 F -0.120 7.120 29 C -0.173 4.173 30 C -0.106 4.106 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.223 0.777 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.166 0.834 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.151 0.849 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.217 -1.250 -19.291 19.598 hybrid contribution -0.001 0.303 -1.091 1.132 sum -3.218 -0.948 -20.382 20.656 Atomic orbital electron populations 1.21666 0.96600 1.00017 0.99806 1.19161 0.93015 0.97795 0.91506 0.92527 1.21529 1.09850 1.19869 1.09458 0.92912 1.25856 0.92730 0.96042 1.03257 1.70829 1.36721 1.26606 1.19801 0.83527 0.76161 0.75899 0.74571 1.21350 1.21337 1.20843 1.22743 0.78969 0.84946 0.84000 1.90527 1.36640 1.26616 1.86486 1.46526 1.55839 1.32594 1.05673 1.21453 0.99597 0.95651 0.84027 1.22097 0.97923 1.00893 0.94245 0.89906 1.22038 0.91498 0.90348 1.02696 1.60640 1.62367 1.03029 1.05426 1.22023 0.91688 0.99773 0.93739 1.22457 0.98187 0.95921 1.03113 1.20090 0.90127 0.96943 0.98128 0.89760 1.19876 0.95544 0.95906 0.97577 1.21040 0.93192 0.98563 0.96979 1.21217 0.94953 0.99672 1.00843 1.17741 0.76917 0.97953 0.99868 1.91495 1.29310 1.96084 1.95136 1.21089 0.95194 0.99763 1.01277 1.20848 0.92841 0.97985 0.98959 0.92584 0.95258 0.93923 0.92413 0.77750 0.91459 0.92738 0.90223 0.90777 0.83373 0.90617 0.90936 0.91071 0.91046 0.84741 0.84608 0.84884 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.03 37.16 0.34 -2.08 16 2 C 0.01 0.17 2.38 -92.92 -0.22 -0.05 16 3 H 0.06 1.43 6.66 -51.93 -0.35 1.09 16 4 C -0.57 -16.16 7.54 -34.44 -0.26 -16.42 16 5 H 0.05 1.52 7.82 -52.48 -0.41 1.10 16 6 C 0.03 0.76 5.45 -17.82 -0.10 0.66 16 7 N -0.90 -27.73 13.62 55.43 0.75 -26.98 16 8 Si 1.07 26.02 29.91 -169.99 -5.08 20.93 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.51 11.82 7.15 -10.99 -0.08 11.74 16 13 O -0.53 -14.72 16.03 5.56 0.09 -14.63 16 14 N -0.75 -13.00 5.17 -60.29 -0.31 -13.31 16 15 C 0.12 1.72 3.44 -4.04 -0.01 1.71 16 16 C -0.13 -1.37 2.28 -90.54 -0.21 -1.58 16 17 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 18 C 0.06 0.62 5.93 -3.83 -0.02 0.60 16 19 N -0.69 -7.07 6.80 -113.82 -0.77 -7.85 16 20 C 0.06 0.49 6.55 -3.84 -0.03 0.46 16 21 C -0.16 -1.37 4.60 -26.65 -0.12 -1.50 16 22 C -0.03 -0.31 2.28 -91.65 -0.21 -0.52 16 23 H 0.08 0.65 8.01 -51.93 -0.42 0.23 16 24 C -0.09 -0.95 4.55 -104.62 -0.48 -1.43 16 25 C -0.08 -0.99 6.82 -39.59 -0.27 -1.26 16 26 C -0.15 -1.93 10.03 -39.51 -0.40 -2.33 16 27 C 0.09 1.22 7.30 -39.42 -0.29 0.94 16 28 F -0.14 -1.96 17.27 2.25 0.04 -1.92 16 29 C -0.15 -1.69 10.03 -39.52 -0.40 -2.09 16 30 C -0.09 -0.88 9.67 -39.59 -0.38 -1.26 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.46 7.71 -51.93 -0.40 0.06 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.26 8.04 6.67 -40.82 -0.27 7.76 16 35 H 0.39 5.74 7.08 -40.82 -0.29 5.45 16 36 H 0.07 1.15 5.30 -51.93 -0.28 0.88 16 37 H 0.05 0.83 5.13 -51.93 -0.27 0.56 16 38 H 0.08 0.82 7.08 -51.93 -0.37 0.45 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.35 4.10 7.07 -39.29 -0.28 3.83 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.72 5.03 -51.93 -0.26 0.46 16 44 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 45 H 0.13 1.68 5.64 -52.49 -0.30 1.38 16 46 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 48 H 0.13 0.96 8.04 -52.48 -0.42 0.54 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -33.84 375.51 -9.66 -43.50 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.90 Total: 8.98 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -3.13 Total: -14.39 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.33 Total: -48.13 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.09 Total: -14.63 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.84 -9.66 -43.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.031 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds