Wall clock time and date at job start Tue Mar 31 2020 17:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47101 * 2 1 4 4 C 1.50701 * 109.46799 * 119.99611 * 2 1 3 5 5 H 1.08005 * 120.00210 * 31.70115 * 4 2 1 6 6 C 1.37874 * 120.00078 * 211.69259 * 4 2 1 7 7 N 1.31517 * 119.99765 * 353.19629 * 6 4 2 8 8 Si 1.86803 * 120.00207 * 173.19147 * 6 4 2 9 9 H 1.48499 * 109.47144 * 60.00001 * 8 6 4 10 10 H 1.48500 * 109.46794 * 300.00383 * 8 6 4 11 11 H 1.48503 * 109.47316 * 180.02562 * 8 6 4 12 12 C 1.50699 * 109.47327 * 239.99496 * 2 1 3 13 13 O 1.21277 * 120.00278 * 239.99854 * 12 2 1 14 14 N 1.34775 * 119.99454 * 60.00002 * 12 2 1 15 15 C 1.46507 * 119.99867 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47087 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.50639 * 56.35508 * 16 15 14 18 18 C 1.53039 * 109.50378 * 296.28044 * 16 15 14 19 19 N 1.46852 * 109.52068 * 299.23741 * 18 16 15 20 20 C 1.46839 * 111.20194 * 298.25749 * 19 18 16 21 21 C 1.53037 * 109.52120 * 61.74054 * 20 19 18 22 22 C 1.53118 * 109.50289 * 176.47651 * 16 15 14 23 23 H 1.08995 * 109.52584 * 182.19106 * 22 16 15 24 24 C 1.50703 * 109.52287 * 302.38392 * 22 16 15 25 25 C 1.38244 * 119.97343 * 79.46377 * 24 22 16 26 26 C 1.38206 * 120.02085 * 179.72785 * 25 24 22 27 27 C 1.38464 * 119.97264 * 0.56738 * 26 25 24 28 28 F 1.35095 * 120.02320 * 179.68181 * 27 26 25 29 29 C 1.38453 * 119.94967 * 359.70620 * 27 26 25 30 30 C 1.38197 * 119.97536 * 0.02562 * 29 27 26 31 31 H 1.09004 * 109.47656 * 294.97345 * 1 2 3 32 32 H 1.09001 * 109.47436 * 54.97756 * 1 2 3 33 33 H 1.09002 * 109.47368 * 174.97955 * 1 2 3 34 34 H 0.96997 * 120.00016 * 3.53915 * 7 6 4 35 35 H 0.97003 * 120.00416 * 0.02562 * 14 12 2 36 36 H 1.09000 * 109.46884 * 300.00711 * 15 14 12 37 37 H 1.08996 * 109.46883 * 60.00474 * 15 14 12 38 38 H 1.08994 * 109.46730 * 59.25434 * 18 16 15 39 39 H 1.08999 * 109.46343 * 179.23766 * 18 16 15 40 40 H 1.00898 * 111.00055 * 62.35833 * 19 18 16 41 41 H 1.08996 * 109.46560 * 181.75786 * 20 19 18 42 42 H 1.08999 * 109.46356 * 301.74249 * 20 19 18 43 43 H 1.09004 * 109.50207 * 60.76732 * 21 20 19 44 44 H 1.09008 * 109.50277 * 180.84004 * 21 20 19 45 45 H 1.07999 * 119.99052 * 359.97438 * 25 24 22 46 46 H 1.07996 * 120.01332 * 180.29785 * 26 25 24 47 47 H 1.07998 * 120.01251 * 179.97438 * 29 27 26 48 48 H 1.08003 * 119.99144 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 1.4620 -1.5232 1.6555 6 6 3.2199 -0.3227 1.8138 7 7 3.9804 0.5736 1.2240 8 14 3.7488 -1.0706 3.4418 9 1 3.8872 -2.5413 3.2893 10 1 2.7268 -0.7745 4.4778 11 1 5.0524 -0.4902 3.8530 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.1956 -0.9404 -3.6507 16 6 1.6860 -0.2189 -4.8999 17 1 1.9946 0.8260 -4.8681 18 6 0.1585 -0.2991 -4.9489 19 7 -0.2573 -1.7061 -5.0121 20 6 0.2500 -2.3557 -6.2274 21 6 1.7802 -2.3368 -6.2166 22 6 2.2676 -0.8868 -6.1490 23 1 1.9360 -0.3493 -7.0373 24 6 3.7728 -0.8642 -6.0776 25 6 4.4413 -1.7915 -5.3003 26 6 5.8219 -1.7752 -5.2386 27 6 6.5348 -0.8222 -5.9463 28 9 7.8840 -0.8013 -5.8816 29 6 5.8638 0.1095 -6.7199 30 6 4.4835 0.0878 -6.7845 31 1 -0.3634 0.4339 0.9316 32 1 -0.3634 0.5898 -0.8416 33 1 -0.3634 -1.0237 -0.0899 34 1 3.6819 0.9997 0.4053 35 1 1.1494 0.5388 -2.5435 36 1 3.2856 -0.9400 -3.6504 37 1 1.8326 -1.9681 -3.6508 38 1 -0.2584 0.1629 -4.0540 39 1 -0.2047 0.2267 -5.8319 40 1 0.0341 -2.2067 -4.1860 41 1 -0.1002 -3.3873 -6.2611 42 1 -0.1133 -1.8199 -7.1043 43 1 2.1448 -2.8842 -5.3473 44 1 2.1564 -2.8057 -7.1259 45 1 3.8848 -2.5315 -4.7443 46 1 6.3443 -2.5028 -4.6352 47 1 6.4188 0.8536 -7.2719 48 1 3.9598 0.8143 -7.3882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575914132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:39 Heat of formation + Delta-G solvation = -95.273286 kcal Electronic energy + Delta-G solvation = -29777.847503 eV Core-core repulsion = 25745.061109 eV Total energy + Delta-G solvation = -4032.786393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.98639 -41.69196 -40.28213 -39.11958 -35.88161 -35.49789 -34.17732 -32.89898 -32.27014 -31.59686 -29.98768 -27.37348 -26.65999 -24.99909 -24.49666 -24.32173 -23.04717 -22.39290 -21.24047 -20.25392 -18.92285 -18.73194 -17.68308 -17.49418 -17.18010 -16.80514 -16.71112 -16.57551 -16.04116 -15.91098 -15.68396 -15.56711 -15.03534 -15.00762 -14.56432 -14.52807 -14.45863 -14.22318 -13.88720 -13.79378 -13.56925 -13.15015 -12.99445 -12.86897 -12.81680 -12.79539 -12.58836 -12.28246 -12.11982 -12.00962 -11.93296 -11.70943 -11.52980 -11.28500 -10.74015 -10.72178 -10.25175 -10.16892 -9.87433 -9.54135 -9.30007 -8.65988 -6.32444 0.06418 0.19388 1.49632 1.58379 1.76937 2.03130 2.40707 2.53449 2.59689 3.22021 3.25274 3.33450 3.48431 3.65142 3.77999 3.87612 3.89084 3.97976 4.12605 4.22295 4.28506 4.29834 4.36048 4.43285 4.48895 4.56042 4.62605 4.67141 4.74036 4.83083 4.86100 4.90647 4.94203 5.02075 5.04339 5.05198 5.09524 5.14500 5.22378 5.24597 5.26471 5.42927 5.53432 5.66583 5.85931 5.93028 6.15785 6.16131 6.35534 6.53254 6.88341 7.44496 7.64551 8.76021 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.004007 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.470788 B = 6986.482316 C = 9153.945830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.004 4.004 3 H 0.045 0.955 4 C -0.581 4.581 5 H 0.041 0.959 6 C -0.026 4.026 7 N -0.933 5.933 8 Si 1.109 2.891 9 H -0.285 1.285 10 H -0.258 1.258 11 H -0.284 1.284 12 C 0.506 3.494 13 O -0.584 6.584 14 N -0.727 5.727 15 C 0.120 3.880 16 C -0.119 4.119 17 H 0.092 0.908 18 C 0.067 3.933 19 N -0.693 5.693 20 C 0.060 3.940 21 C -0.154 4.154 22 C -0.027 4.027 23 H 0.118 0.882 24 C -0.088 4.088 25 C -0.093 4.093 26 C -0.172 4.172 27 C 0.070 3.930 28 F -0.153 7.153 29 C -0.152 4.152 30 C -0.080 4.080 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.254 0.746 35 H 0.406 0.594 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.334 0.666 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.157 0.843 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 0.815 -22.589 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.026 4.026 3 H 0.063 0.937 4 C -0.619 4.619 5 H 0.059 0.941 6 C -0.225 4.225 7 N -0.571 5.571 8 Si 0.932 3.068 9 H -0.211 1.211 10 H -0.183 1.183 11 H -0.210 1.210 12 C 0.294 3.706 13 O -0.462 6.462 14 N -0.381 5.381 15 C -0.004 4.004 16 C -0.139 4.139 17 H 0.110 0.890 18 C -0.063 4.063 19 N -0.321 5.321 20 C -0.069 4.069 21 C -0.193 4.193 22 C -0.045 4.045 23 H 0.136 0.864 24 C -0.088 4.088 25 C -0.111 4.111 26 C -0.191 4.191 27 C 0.051 3.949 28 F -0.132 7.132 29 C -0.171 4.171 30 C -0.098 4.098 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.242 0.758 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.174 0.826 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.524 0.229 -21.670 22.364 hybrid contribution 0.635 -0.169 -0.451 0.797 sum -4.888 0.060 -22.121 22.655 Atomic orbital electron populations 1.21547 0.92937 1.00682 1.01815 1.19203 0.96083 0.96446 0.90834 0.93725 1.21899 1.09581 1.19378 1.11054 0.94059 1.27163 0.93197 0.96060 1.06048 1.70948 1.37575 1.28451 1.20112 0.83049 0.76543 0.75206 0.72052 1.21102 1.18257 1.20966 1.22338 0.78420 0.84191 0.85648 1.90505 1.39178 1.29057 1.87494 1.46130 1.54589 1.32505 1.04888 1.21554 0.98214 0.95958 0.84678 1.22049 0.98839 1.00706 0.92332 0.89013 1.22098 0.90269 0.90220 1.03717 1.60689 1.62555 1.03377 1.05513 1.22079 0.91151 1.00170 0.93514 1.22411 0.98533 0.95636 1.02725 1.20145 0.88635 0.97332 0.98437 0.86391 1.20120 0.96654 0.95276 0.96746 1.21056 0.92858 0.99386 0.97820 1.21294 0.95672 1.00352 1.01743 1.18024 0.76640 0.99062 1.01193 1.91458 1.30112 1.96237 1.95355 1.21431 0.95989 0.99253 1.00413 1.21272 0.92399 0.97836 0.98274 0.92393 0.91092 0.94249 0.93610 0.75796 0.93918 0.93288 0.90757 0.88176 0.84830 0.90440 0.89020 0.93342 0.89830 0.85915 0.85609 0.82582 0.81375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.25 9.03 71.98 0.65 -3.60 16 2 C 0.00 -0.19 2.38 -12.29 -0.03 -0.22 16 3 H 0.04 2.29 6.66 -2.39 -0.02 2.28 16 4 C -0.58 -33.66 7.54 25.60 0.19 -33.47 16 5 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 6 C -0.03 -1.56 5.45 84.65 0.46 -1.10 16 7 N -0.93 -58.85 13.62 21.45 0.29 -58.56 16 8 Si 1.11 53.09 29.91 68.60 2.05 55.14 16 9 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 C 0.51 24.07 7.15 87.66 0.63 24.70 16 13 O -0.58 -33.79 16.03 -3.02 -0.05 -33.83 16 14 N -0.73 -24.72 5.17 -463.06 -2.40 -27.12 16 15 C 0.12 3.48 3.44 86.38 0.30 3.77 16 16 C -0.12 -2.15 2.28 -10.74 -0.02 -2.17 16 17 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 18 C 0.07 1.05 5.93 86.33 0.51 1.56 16 19 N -0.69 -12.52 6.80 -514.02 -3.49 -16.01 16 20 C 0.06 0.84 6.55 86.33 0.57 1.41 16 21 C -0.15 -2.34 4.60 30.65 0.14 -2.20 16 22 C -0.03 -0.40 2.28 -11.46 -0.03 -0.42 16 23 H 0.12 1.10 8.01 -2.39 -0.02 1.08 16 24 C -0.09 -1.71 4.55 -19.86 -0.09 -1.80 16 25 C -0.09 -2.37 6.82 22.26 0.15 -2.22 16 26 C -0.17 -4.79 10.03 22.32 0.22 -4.57 16 27 C 0.07 1.85 7.30 22.37 0.16 2.01 16 28 F -0.15 -4.38 17.27 44.97 0.78 -3.61 16 29 C -0.15 -3.06 10.03 22.31 0.22 -2.84 16 30 C -0.08 -1.33 9.67 22.26 0.22 -1.12 16 31 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.07 2.06 7.71 -2.39 -0.02 2.04 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.25 15.95 6.67 -92.71 -0.62 15.33 16 35 H 0.41 11.13 7.08 -92.71 -0.66 10.47 16 36 H 0.04 1.50 5.30 -2.39 -0.01 1.48 16 37 H 0.05 1.51 5.13 -2.39 -0.01 1.50 16 38 H 0.07 1.26 7.08 -2.39 -0.02 1.25 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.33 7.50 7.07 -89.70 -0.63 6.86 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 0.97 5.03 -2.38 -0.01 0.96 16 44 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.12 3.33 5.64 -2.91 -0.02 3.31 16 46 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 47 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 48 H 0.17 1.53 8.04 -2.91 -0.02 1.51 16 Total: -1.00 -77.70 375.51 1.30 -76.40 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -0.14 Total: 29.86 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.25 Total: -22.27 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -5.60 Total: -101.69 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.05 Total: -33.83 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.78 Total: -3.61 kcal Atomic # 14 Polarization: 53.09 SS G_CDS: 2.05 Total: 55.14 kcal Total: -77.70 1.30 -76.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.873 kcal (2) G-P(sol) polarization free energy of solvation -77.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds