Wall clock time and date at job start Tue Mar 31 2020 17:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99731 * 2 1 4 4 C 1.52992 * 109.47416 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47532 * 178.80974 * 4 3 2 6 6 C 1.37757 * 127.16274 * 86.00528 * 5 4 3 7 7 C 1.47251 * 126.49178 * 359.96531 * 6 5 4 8 8 N 1.31678 * 125.86905 * 359.97438 * 7 6 5 9 9 C 1.33739 * 109.24934 * 179.97438 * 8 7 6 10 10 C 1.34891 * 108.45304 * 359.73973 * 9 8 7 11 11 N 1.36639 * 125.86828 * 179.97438 * 7 6 5 12 12 C 1.46502 * 126.51528 * 0.02562 * 11 7 6 13 13 N 1.31451 * 107.01566 * 180.23141 * 6 5 4 14 14 N 1.28521 * 109.89684 * 359.61812 * 13 6 5 15 15 C 1.31479 * 110.11383 * 0.39410 * 14 13 6 16 16 N 1.38296 * 126.35004 * 179.78735 * 15 14 13 17 17 C 1.46901 * 110.99647 * 294.95540 * 16 15 14 18 18 C 1.46902 * 111.00036 * 58.90559 * 16 15 14 19 19 H 1.09002 * 109.47299 * 300.00617 * 18 16 15 20 20 C 1.53008 * 109.46970 * 60.00297 * 18 16 15 21 21 C 1.50700 * 109.47187 * 179.97438 * 18 16 15 22 22 H 1.08002 * 119.99651 * 0.02562 * 21 18 16 23 23 C 1.37869 * 120.00038 * 180.02562 * 21 18 16 24 24 N 1.31519 * 120.00191 * 359.97438 * 23 21 18 25 25 Si 1.86804 * 120.00075 * 180.02562 * 23 21 18 26 26 H 1.48494 * 109.46992 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47125 * 120.00249 * 25 23 21 28 28 H 1.48506 * 109.46872 * 240.00000 * 25 23 21 29 29 H 1.09007 * 109.46655 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47346 * 299.99432 * 1 2 3 31 31 H 1.09000 * 109.47290 * 60.00371 * 1 2 3 32 32 H 1.09006 * 109.47191 * 59.99685 * 3 2 1 33 33 H 1.09003 * 109.47174 * 300.00433 * 3 2 1 34 34 H 1.09000 * 109.47206 * 58.81183 * 4 3 2 35 35 H 1.08998 * 109.47134 * 298.81637 * 4 3 2 36 36 H 1.08005 * 125.77107 * 179.97438 * 9 8 7 37 37 H 1.07999 * 126.46973 * 180.28838 * 10 9 8 38 38 H 1.09004 * 109.46814 * 89.99996 * 12 11 7 39 39 H 1.08996 * 109.46867 * 330.00207 * 12 11 7 40 40 H 1.08996 * 109.46822 * 209.99751 * 12 11 7 41 41 H 1.09000 * 109.46809 * 66.21709 * 17 16 15 42 42 H 1.09003 * 109.46853 * 186.20980 * 17 16 15 43 43 H 1.08995 * 109.47249 * 306.21429 * 17 16 15 44 44 H 1.09006 * 109.47052 * 59.99576 * 20 18 16 45 45 H 1.08998 * 109.47191 * 179.97438 * 20 18 16 46 46 H 1.08999 * 109.47045 * 300.00553 * 20 18 16 47 47 H 0.97001 * 120.00159 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1849 0.0006 5 7 4.1311 2.5229 -0.0280 6 6 4.4011 3.3369 1.0500 7 6 4.1437 3.0282 2.4666 8 7 3.6103 1.9168 2.9295 9 6 3.5297 1.9883 4.2625 10 6 4.0313 3.1766 4.6575 11 7 4.4172 3.8458 3.5267 12 6 5.0157 5.1816 3.4657 13 7 4.9266 4.4439 0.5741 14 7 5.0091 4.3736 -0.7065 15 6 4.5341 3.2222 -1.1277 16 7 4.4576 2.7984 -2.4419 17 6 3.5313 3.6384 -3.2128 18 6 5.7877 2.7727 -3.0649 19 1 6.2177 3.7741 -3.0450 20 6 6.6945 1.8128 -2.2919 21 6 5.6647 2.3064 -4.4927 22 1 4.6953 2.0548 -4.8969 23 6 6.7896 2.2011 -5.2828 24 7 7.9700 2.5079 -4.7907 25 14 6.6370 1.6238 -7.0529 26 1 5.2116 1.3441 -7.3611 27 1 7.1426 2.6819 -7.9639 28 1 7.4357 0.3860 -7.2404 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8559 0.6255 -0.8783 35 1 3.8581 0.6626 0.9013 36 1 3.1338 1.2224 4.9130 37 1 4.1110 3.5339 5.6735 38 1 4.2276 5.9287 3.3714 39 1 5.6797 5.2431 2.6035 40 1 5.5848 5.3666 4.3767 41 1 3.9359 4.6475 -3.2915 42 1 3.4052 3.2187 -4.2108 43 1 2.5659 3.6724 -2.7081 44 1 6.2645 0.8114 -2.3117 45 1 7.6813 1.7934 -2.7545 46 1 6.7835 2.1495 -1.2591 47 1 8.7615 2.4335 -5.3465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649067903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:08 Heat of formation + Delta-G solvation = 123.746477 kcal Electronic energy + Delta-G solvation = -30109.917861 eV Core-core repulsion = 26138.841590 eV Total energy + Delta-G solvation = -3971.076271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.71587 -41.86430 -37.97860 -37.11310 -35.01039 -34.01895 -32.98307 -31.10716 -29.74060 -29.36625 -28.37528 -27.12129 -26.39813 -25.61911 -24.44397 -23.60921 -22.77833 -21.92277 -21.17359 -19.85459 -19.40634 -17.43787 -17.00323 -16.58958 -16.14933 -15.99801 -15.78758 -15.64888 -15.06270 -14.98537 -14.74601 -14.44957 -14.12145 -13.69159 -13.61720 -13.29260 -13.16991 -13.02794 -12.77340 -12.41281 -12.30677 -11.89276 -11.51537 -11.44706 -11.25109 -11.16895 -10.98750 -10.79412 -10.48231 -10.33716 -10.28867 -10.14758 -10.10368 -9.94558 -9.85122 -9.68724 -9.37130 -9.11422 -8.54389 -8.00533 -7.79961 -6.09228 -4.15868 1.22185 2.12531 2.28675 2.78143 2.85354 3.26961 3.34996 3.38184 3.39171 3.73067 3.92777 4.33532 4.59898 4.62668 4.67049 4.91596 4.99387 5.09623 5.12953 5.23459 5.24673 5.30072 5.31567 5.38155 5.47550 5.53592 5.56432 5.58551 5.76780 5.86435 6.03741 6.09181 6.25499 6.35014 6.52929 6.54605 6.67258 6.73901 6.89158 6.92997 7.02381 7.09197 7.32260 7.59274 7.70897 7.81018 7.87746 8.14690 8.38951 8.87040 8.94851 9.49246 10.97765 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.003752 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.916373 B = 7461.277434 C = 8852.248412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.382 6.382 3 C 0.062 3.938 4 C 0.118 3.882 5 N -0.442 5.442 6 C 0.226 3.774 7 C 0.284 3.716 8 N -0.469 5.469 9 C -0.022 4.022 10 C -0.044 4.044 11 N -0.435 5.435 12 C 0.068 3.932 13 N -0.270 5.270 14 N -0.310 5.310 15 C 0.402 3.598 16 N -0.473 5.473 17 C 0.051 3.949 18 C 0.225 3.775 19 H 0.024 0.976 20 C -0.132 4.132 21 C -0.511 4.511 22 H 0.068 0.932 23 C 0.063 3.937 24 N -0.888 5.888 25 Si 0.901 3.099 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.092 0.908 43 H 0.042 0.958 44 H 0.034 0.966 45 H 0.093 0.907 46 H 0.001 0.999 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.430 0.446 17.065 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.300 6.300 3 C -0.016 4.016 4 C -0.005 4.005 5 N -0.136 5.136 6 C -0.040 4.040 7 C 0.023 3.977 8 N -0.190 5.190 9 C -0.172 4.172 10 C -0.179 4.179 11 N -0.117 5.117 12 C -0.074 4.074 13 N -0.116 5.116 14 N -0.155 5.155 15 C 0.047 3.953 16 N -0.201 5.201 17 C -0.096 4.096 18 C 0.121 3.879 19 H 0.041 0.959 20 C -0.191 4.191 21 C -0.550 4.550 22 H 0.086 0.914 23 C -0.139 4.139 24 N -0.526 5.526 25 Si 0.729 3.271 26 H -0.196 1.196 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.193 0.807 37 H 0.198 0.802 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.111 0.889 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.112 0.888 46 H 0.020 0.980 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.888 0.654 16.430 19.721 hybrid contribution -0.175 0.031 -0.236 0.295 sum -11.063 0.685 16.193 19.624 Atomic orbital electron populations 1.22726 0.80713 1.02728 0.99939 1.87808 1.19850 1.26849 1.95458 1.22574 0.93015 0.85292 1.00676 1.21612 0.91995 0.80044 1.06891 1.46070 1.46096 1.15891 1.05534 1.20424 1.06996 0.90746 0.85836 1.19043 1.04994 0.88510 0.85156 1.70451 1.18280 1.19425 1.10872 1.22296 1.06029 0.97697 0.91205 1.22859 1.07635 0.95768 0.91685 1.45383 1.45173 1.15399 1.05743 1.22306 0.99797 0.79873 1.05449 1.74276 1.16165 1.17273 1.03876 1.74789 1.20943 1.17210 1.02545 1.22786 0.95792 0.87171 0.89572 1.59215 1.16388 1.50186 0.94267 1.22217 0.93057 0.95539 0.98793 1.19482 0.79437 0.96195 0.92799 0.95865 1.21837 1.03458 0.98347 0.95424 1.21075 0.94110 1.45430 0.94344 0.91385 1.24908 0.95108 0.95147 0.98753 1.69908 0.98247 1.48130 1.36307 0.86391 0.78263 0.78306 0.84154 1.19625 1.21009 1.20967 0.89437 0.94207 0.94021 0.92751 0.92950 0.86890 0.86910 0.80723 0.80205 0.90178 0.87315 0.89690 0.94385 0.88935 0.93870 0.94663 0.88831 0.98016 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.38 10.70 -35.23 -0.38 -5.75 16 3 C 0.06 0.90 6.26 37.15 0.23 1.14 16 4 C 0.12 1.92 6.07 -4.05 -0.02 1.89 16 5 N -0.44 -8.15 2.83 -114.83 -0.33 -8.48 16 6 C 0.23 4.05 7.85 -153.70 -1.21 2.85 16 7 C 0.28 4.37 7.76 -154.56 -1.20 3.17 16 8 N -0.47 -6.86 9.56 -11.31 -0.11 -6.97 16 9 C -0.02 -0.24 11.83 -17.91 -0.21 -0.45 16 10 C -0.04 -0.42 11.58 -16.45 -0.19 -0.61 16 11 N -0.43 -5.28 3.20 -121.76 -0.39 -5.67 16 12 C 0.07 0.65 10.77 59.85 0.64 1.29 16 13 N -0.27 -5.26 10.27 32.52 0.33 -4.92 16 14 N -0.31 -6.77 12.10 30.29 0.37 -6.40 16 15 C 0.40 8.39 5.01 -319.03 -1.60 6.79 16 16 N -0.47 -10.25 4.63 -176.11 -0.82 -11.06 16 17 C 0.05 0.99 9.14 60.07 0.55 1.54 16 18 C 0.22 5.67 1.99 -68.86 -0.14 5.53 16 19 H 0.02 0.67 8.07 -51.93 -0.42 0.25 16 20 C -0.13 -3.32 8.84 37.16 0.33 -2.99 16 21 C -0.51 -13.43 7.95 -34.44 -0.27 -13.70 16 22 H 0.07 1.74 6.40 -52.49 -0.34 1.40 16 23 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 24 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 25 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.11 1.95 8.12 -51.93 -0.42 1.53 16 35 H 0.11 1.81 6.88 -51.93 -0.36 1.45 16 36 H 0.18 1.40 8.06 -52.48 -0.42 0.97 16 37 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 1.30 6.50 -51.93 -0.34 0.96 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.78 6.32 -51.93 -0.33 1.45 16 43 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 46 H 0.00 0.02 7.22 -51.93 -0.38 -0.35 16 47 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -31.89 388.24 -9.02 -40.91 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.10 Total: 1.58 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -2.07 Total: 9.50 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.31 Total: -67.76 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.89 -9.02 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649067903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.656 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds