Wall clock time and date at job start Tue Mar 31 2020 17:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99731 * 2 1 4 4 C 1.52992 * 109.47416 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47532 * 178.80974 * 4 3 2 6 6 C 1.37757 * 127.16274 * 86.00528 * 5 4 3 7 7 C 1.47251 * 126.49178 * 359.96531 * 6 5 4 8 8 N 1.31678 * 125.86905 * 359.97438 * 7 6 5 9 9 C 1.33739 * 109.24934 * 179.97438 * 8 7 6 10 10 C 1.34891 * 108.45304 * 359.73973 * 9 8 7 11 11 N 1.36639 * 125.86828 * 179.97438 * 7 6 5 12 12 C 1.46502 * 126.51528 * 0.02562 * 11 7 6 13 13 N 1.31451 * 107.01566 * 180.23141 * 6 5 4 14 14 N 1.28521 * 109.89684 * 359.61812 * 13 6 5 15 15 C 1.31479 * 110.11383 * 0.39410 * 14 13 6 16 16 N 1.38296 * 126.35004 * 179.78735 * 15 14 13 17 17 C 1.46901 * 110.99647 * 294.95540 * 16 15 14 18 18 C 1.46902 * 111.00036 * 58.90559 * 16 15 14 19 19 H 1.09002 * 109.47299 * 300.00617 * 18 16 15 20 20 C 1.53008 * 109.46970 * 60.00297 * 18 16 15 21 21 C 1.50700 * 109.47187 * 179.97438 * 18 16 15 22 22 H 1.08002 * 119.99651 * 0.02562 * 21 18 16 23 23 C 1.37869 * 120.00038 * 180.02562 * 21 18 16 24 24 N 1.31519 * 120.00191 * 359.97438 * 23 21 18 25 25 Si 1.86804 * 120.00075 * 180.02562 * 23 21 18 26 26 H 1.48494 * 109.46992 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47125 * 120.00249 * 25 23 21 28 28 H 1.48506 * 109.46872 * 240.00000 * 25 23 21 29 29 H 1.09007 * 109.46655 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47346 * 299.99432 * 1 2 3 31 31 H 1.09000 * 109.47290 * 60.00371 * 1 2 3 32 32 H 1.09006 * 109.47191 * 59.99685 * 3 2 1 33 33 H 1.09003 * 109.47174 * 300.00433 * 3 2 1 34 34 H 1.09000 * 109.47206 * 58.81183 * 4 3 2 35 35 H 1.08998 * 109.47134 * 298.81637 * 4 3 2 36 36 H 1.08005 * 125.77107 * 179.97438 * 9 8 7 37 37 H 1.07999 * 126.46973 * 180.28838 * 10 9 8 38 38 H 1.09004 * 109.46814 * 89.99996 * 12 11 7 39 39 H 1.08996 * 109.46867 * 330.00207 * 12 11 7 40 40 H 1.08996 * 109.46822 * 209.99751 * 12 11 7 41 41 H 1.09000 * 109.46809 * 66.21709 * 17 16 15 42 42 H 1.09003 * 109.46853 * 186.20980 * 17 16 15 43 43 H 1.08995 * 109.47249 * 306.21429 * 17 16 15 44 44 H 1.09006 * 109.47052 * 59.99576 * 20 18 16 45 45 H 1.08998 * 109.47191 * 179.97438 * 20 18 16 46 46 H 1.08999 * 109.47045 * 300.00553 * 20 18 16 47 47 H 0.97001 * 120.00159 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1849 0.0006 5 7 4.1311 2.5229 -0.0280 6 6 4.4011 3.3369 1.0500 7 6 4.1437 3.0282 2.4666 8 7 3.6103 1.9168 2.9295 9 6 3.5297 1.9883 4.2625 10 6 4.0313 3.1766 4.6575 11 7 4.4172 3.8458 3.5267 12 6 5.0157 5.1816 3.4657 13 7 4.9266 4.4439 0.5741 14 7 5.0091 4.3736 -0.7065 15 6 4.5341 3.2222 -1.1277 16 7 4.4576 2.7984 -2.4419 17 6 3.5313 3.6384 -3.2128 18 6 5.7877 2.7727 -3.0649 19 1 6.2177 3.7741 -3.0450 20 6 6.6945 1.8128 -2.2919 21 6 5.6647 2.3064 -4.4927 22 1 4.6953 2.0548 -4.8969 23 6 6.7896 2.2011 -5.2828 24 7 7.9700 2.5079 -4.7907 25 14 6.6370 1.6238 -7.0529 26 1 5.2116 1.3441 -7.3611 27 1 7.1426 2.6819 -7.9639 28 1 7.4357 0.3860 -7.2404 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8559 0.6255 -0.8783 35 1 3.8581 0.6626 0.9013 36 1 3.1338 1.2224 4.9130 37 1 4.1110 3.5339 5.6735 38 1 4.2276 5.9287 3.3714 39 1 5.6797 5.2431 2.6035 40 1 5.5848 5.3666 4.3767 41 1 3.9359 4.6475 -3.2915 42 1 3.4052 3.2187 -4.2108 43 1 2.5659 3.6724 -2.7081 44 1 6.2645 0.8114 -2.3117 45 1 7.6813 1.7934 -2.7545 46 1 6.7835 2.1495 -1.2591 47 1 8.7615 2.4335 -5.3465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649067903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:07 Heat of formation + Delta-G solvation = 104.741971 kcal Electronic energy + Delta-G solvation = -30110.741958 eV Core-core repulsion = 26138.841590 eV Total energy + Delta-G solvation = -3971.900368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.13770 -42.86289 -39.06265 -38.87799 -36.35047 -34.97550 -34.93151 -32.40190 -31.34166 -30.94439 -29.59630 -28.00582 -27.56576 -27.26373 -26.20424 -24.88615 -24.10267 -23.42880 -22.30712 -21.12393 -20.91640 -18.64028 -18.48032 -18.12224 -17.60052 -17.24346 -17.05915 -16.78752 -16.43314 -16.41223 -15.99961 -15.79593 -15.38965 -15.10324 -14.94399 -14.53268 -14.24109 -14.20436 -13.88734 -13.72883 -13.63887 -13.45106 -13.07516 -12.90057 -12.74523 -12.69566 -12.61309 -12.31524 -12.26530 -12.22511 -12.07518 -11.86253 -11.38512 -11.14408 -11.07640 -10.87509 -10.72880 -10.61766 -10.58367 -9.62219 -9.13137 -8.14485 -6.28433 -0.00021 0.84160 1.09116 1.45808 1.47459 1.59219 1.61032 1.78814 2.22314 2.40839 2.63402 2.68501 3.12385 3.18816 3.51789 3.74698 3.83931 3.91516 3.98512 4.13974 4.22179 4.27025 4.38389 4.46949 4.48881 4.49762 4.53144 4.59439 4.62517 4.66359 4.69032 4.80151 4.82441 4.82776 4.88881 4.93645 5.04543 5.19745 5.32379 5.38956 5.60686 5.68631 5.75820 5.92574 5.98109 6.05515 6.11433 6.52265 6.81652 6.86816 7.40259 7.44553 8.93006 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.003752 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.916373 B = 7461.277434 C = 8852.248412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.078 3.922 4 C 0.121 3.879 5 N -0.442 5.442 6 C 0.246 3.754 7 C 0.229 3.771 8 N -0.482 5.482 9 C -0.040 4.040 10 C -0.010 4.010 11 N -0.432 5.432 12 C 0.065 3.935 13 N -0.289 5.289 14 N -0.342 5.342 15 C 0.383 3.617 16 N -0.469 5.469 17 C 0.054 3.946 18 C 0.236 3.764 19 H -0.020 1.020 20 C -0.114 4.114 21 C -0.521 4.521 22 H 0.075 0.925 23 C 0.015 3.985 24 N -0.921 5.921 25 Si 0.969 3.031 26 H -0.260 1.260 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.205 0.795 37 H 0.231 0.769 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.124 0.876 41 H 0.023 0.977 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.070 0.930 46 H -0.003 1.003 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.270 -0.308 19.198 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C 0.000 4.000 4 C -0.001 4.001 5 N -0.135 5.135 6 C -0.020 4.020 7 C -0.029 4.029 8 N -0.204 5.204 9 C -0.191 4.191 10 C -0.146 4.146 11 N -0.114 5.114 12 C -0.076 4.076 13 N -0.133 5.133 14 N -0.186 5.186 15 C 0.027 3.973 16 N -0.196 5.196 17 C -0.093 4.093 18 C 0.130 3.870 19 H -0.002 1.002 20 C -0.172 4.172 21 C -0.559 4.559 22 H 0.093 0.907 23 C -0.185 4.185 24 N -0.560 5.560 25 Si 0.794 3.206 26 H -0.184 1.184 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.222 0.778 37 H 0.247 0.753 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.142 0.858 41 H 0.042 0.958 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.016 0.984 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.750 -0.082 18.550 22.509 hybrid contribution 0.336 0.254 -0.599 0.732 sum -12.414 0.172 17.951 21.826 Atomic orbital electron populations 1.22979 0.78629 1.04390 1.00766 1.87784 1.22097 1.26303 1.95561 1.22314 0.91575 0.85686 1.00385 1.21644 0.93345 0.78909 1.06226 1.46117 1.46062 1.16361 1.04999 1.20965 1.04271 0.89682 0.87077 1.18773 1.09162 0.90424 0.84587 1.70365 1.17694 1.19346 1.12992 1.22956 1.06621 0.99360 0.90146 1.23730 1.03802 0.94427 0.92663 1.45653 1.44302 1.15816 1.05631 1.22453 0.99996 0.79007 1.06189 1.74232 1.17870 1.18378 1.02831 1.74680 1.21755 1.18218 1.03987 1.22609 0.97487 0.87694 0.89553 1.59098 1.14696 1.50855 0.94903 1.22240 0.93636 0.94384 0.99002 1.19134 0.81098 0.93611 0.93120 1.00208 1.21602 1.02265 0.98514 0.94858 1.21347 0.94491 1.45188 0.94891 0.90673 1.25755 0.94690 0.95141 1.02884 1.70049 0.98991 1.49101 1.37850 0.85336 0.78720 0.77595 0.78957 1.18357 1.20870 1.20786 0.87421 0.93145 0.93405 0.92727 0.93391 0.88208 0.86728 0.77787 0.75264 0.89173 0.90219 0.85760 0.95792 0.88785 0.91239 0.94258 0.91143 0.98401 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.81 10.70 -148.98 -1.59 -12.41 16 3 C 0.08 2.24 6.26 71.98 0.45 2.70 16 4 C 0.12 4.00 6.07 86.38 0.52 4.52 16 5 N -0.44 -16.73 2.83 -517.20 -1.47 -18.20 16 6 C 0.25 9.04 7.85 135.92 1.07 10.11 16 7 C 0.23 6.87 7.76 136.22 1.06 7.93 16 8 N -0.48 -13.35 9.56 -189.70 -1.81 -15.16 16 9 C -0.04 -0.75 11.83 83.63 0.99 0.24 16 10 C -0.01 -0.15 11.58 83.12 0.96 0.81 16 11 N -0.43 -9.47 3.20 -539.13 -1.72 -11.20 16 12 C 0.06 1.11 10.77 127.77 1.38 2.49 16 13 N -0.29 -11.68 10.27 -51.04 -0.52 -12.20 16 14 N -0.34 -15.68 12.10 -58.08 -0.70 -16.39 16 15 C 0.38 16.61 5.01 260.17 1.30 17.91 16 16 N -0.47 -20.99 4.63 -711.10 -3.29 -24.28 16 17 C 0.05 2.15 9.14 127.69 1.17 3.32 16 18 C 0.24 12.40 1.99 44.17 0.09 12.49 16 19 H -0.02 -1.19 8.07 -2.39 -0.02 -1.21 16 20 C -0.11 -5.98 8.84 71.98 0.64 -5.34 16 21 C -0.52 -27.91 7.95 25.60 0.20 -27.71 16 22 H 0.08 3.85 6.40 -2.91 -0.02 3.83 16 23 C 0.01 0.79 5.30 84.65 0.45 1.24 16 24 N -0.92 -53.16 11.32 21.44 0.24 -52.91 16 25 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 29 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.10 3.54 8.12 -2.39 -0.02 3.52 16 35 H 0.11 3.72 6.88 -2.39 -0.02 3.70 16 36 H 0.21 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.23 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.08 1.90 6.50 -2.39 -0.02 1.89 16 40 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 3.64 6.32 -2.39 -0.02 3.62 16 43 H 0.07 2.34 8.10 -2.39 -0.02 2.32 16 44 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.07 4.01 6.07 -2.39 -0.01 4.00 16 46 H 0.00 -0.16 7.22 -2.39 -0.02 -0.18 16 47 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -72.63 388.24 3.65 -68.99 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.97 Total: 16.60 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 11.52 Total: 32.46 kcal Atomic # 7 Polarization: -141.06 SS G_CDS: -9.28 Total: -150.34 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -1.59 Total: -12.41 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.63 3.65 -68.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649067903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.729 kcal (2) G-P(sol) polarization free energy of solvation -72.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds