Wall clock time and date at job start Tue Mar 31 2020 18:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 119.99697 * 2 1 4 4 H 1.08005 * 119.99999 * 198.49776 * 3 2 1 5 5 C 1.38811 * 120.00293 * 18.49844 * 3 2 1 6 6 N 1.31619 * 119.99748 * 16.78328 * 5 3 2 7 7 Si 1.86799 * 120.00112 * 196.78430 * 5 3 2 8 8 H 1.48501 * 109.46960 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47108 * 119.99804 * 7 5 3 10 10 H 1.48501 * 109.47317 * 240.00042 * 7 5 3 11 11 C 1.46495 * 120.00053 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47559 * 90.00028 * 11 2 1 13 13 N 1.46495 * 109.47559 * 180.02562 * 12 11 2 14 14 C 1.46496 * 119.99863 * 270.00034 * 13 12 11 15 15 C 1.34772 * 120.00179 * 90.00264 * 13 12 11 16 16 O 1.21285 * 119.99859 * 359.97438 * 15 13 12 17 17 C 1.50694 * 120.00242 * 180.02562 * 15 13 12 18 18 H 1.08999 * 112.90891 * 345.18130 * 17 15 13 19 19 C 1.53781 * 113.61506 * 213.93390 * 17 15 13 20 20 C 1.53779 * 87.08078 * 270.88110 * 19 17 15 21 21 C 1.53776 * 87.08170 * 334.56776 * 20 19 17 22 22 H 1.09000 * 113.61348 * 270.88262 * 21 20 19 23 23 C 1.50694 * 113.61709 * 139.98222 * 21 20 19 24 24 C 1.38247 * 119.97942 * 204.63749 * 23 21 20 25 25 C 1.38194 * 120.02880 * 179.76782 * 24 23 21 26 26 C 1.38461 * 119.97262 * 0.49965 * 25 24 23 27 27 F 1.35103 * 120.02764 * 179.76693 * 26 25 24 28 28 C 1.38466 * 119.94808 * 359.75759 * 26 25 24 29 29 C 1.38192 * 119.97342 * 359.97438 * 28 26 25 30 30 H 1.08995 * 109.47594 * 272.24515 * 1 2 3 31 31 H 1.09003 * 109.46925 * 32.25234 * 1 2 3 32 32 H 1.09005 * 109.46628 * 152.25050 * 1 2 3 33 33 H 0.97003 * 119.99482 * 179.97438 * 6 5 3 34 34 H 1.09006 * 109.47437 * 330.00433 * 11 2 1 35 35 H 1.09004 * 109.47345 * 210.00484 * 11 2 1 36 36 H 1.09006 * 109.46415 * 59.99779 * 12 11 2 37 37 H 1.09004 * 109.47164 * 300.00567 * 12 11 2 38 38 H 1.09001 * 109.47242 * 270.00012 * 14 13 12 39 39 H 1.08998 * 109.47619 * 30.00001 * 14 13 12 40 40 H 1.09002 * 109.46943 * 149.99890 * 14 13 12 41 41 H 1.09006 * 113.61320 * 156.33126 * 19 17 15 42 42 H 1.09007 * 113.69013 * 25.44382 * 19 17 15 43 43 H 1.09001 * 113.61300 * 220.01402 * 20 19 17 44 44 H 1.08996 * 113.69240 * 89.13017 * 20 19 17 45 45 H 1.08000 * 119.98367 * 0.02562 * 24 23 21 46 46 H 1.07997 * 120.01430 * 180.25794 * 25 24 23 47 47 H 1.07998 * 120.00693 * 180.02562 * 28 26 25 48 48 H 1.08004 * 119.98488 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1878 1.2101 -0.2968 5 6 1.5094 2.3570 0.3814 6 7 0.3756 2.3002 1.0475 7 14 2.2568 4.0135 -0.0507 8 1 3.5237 3.8053 -0.7969 9 1 1.3060 4.7805 -0.8950 10 1 2.5347 4.7715 1.1957 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7111 -1.4417 13 7 3.1845 -2.9801 -1.4411 14 6 4.6495 -2.9806 -1.4409 15 6 2.5102 -4.1470 -1.4408 16 8 1.2974 -4.1465 -1.4406 17 6 3.2632 -5.4523 -1.4397 18 1 4.3161 -5.3351 -1.6959 19 6 2.5587 -6.5705 -2.2260 20 6 1.8337 -6.9263 -0.9174 21 6 3.0269 -6.2987 -0.1777 22 1 3.8309 -7.0043 0.0318 23 6 2.6302 -5.4867 1.0282 24 6 3.4587 -4.4787 1.4853 25 6 3.0937 -3.7303 2.5881 26 6 1.9026 -3.9970 3.2417 27 9 1.5469 -3.2690 4.3229 28 6 1.0761 -5.0103 2.7863 29 6 1.4406 -5.7537 1.6799 30 1 -0.3634 0.0403 1.0268 31 1 -0.3633 0.8691 -0.5484 32 1 -0.3633 -0.9095 -0.4785 33 1 -0.0716 3.1186 1.3143 34 1 1.6084 -2.0282 0.5147 35 1 3.1500 -1.1382 0.5144 36 1 3.0417 -0.9516 -1.9558 37 1 1.5002 -1.8416 -1.9556 38 1 5.0130 -2.9812 -2.4685 39 1 5.0132 -2.0907 -0.9274 40 1 5.0124 -3.8706 -0.9267 41 1 3.2348 -7.3504 -2.5766 42 1 1.8936 -6.2039 -3.0080 43 1 1.7326 -7.9990 -0.7520 44 1 0.8980 -6.3860 -0.7742 45 1 4.3896 -4.2735 0.9777 46 1 3.7391 -2.9402 2.9425 47 1 0.1466 -5.2189 3.2951 48 1 0.7962 -6.5444 1.3247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667604087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:57 Heat of formation + Delta-G solvation = 0.456380 kcal Electronic energy + Delta-G solvation = -30483.204888 eV Core-core repulsion = 26454.569644 eV Total energy + Delta-G solvation = -4028.635244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.66180 -41.05148 -38.70702 -37.37823 -35.80226 -34.84206 -31.50335 -31.10569 -30.78647 -28.94011 -26.89336 -26.13421 -25.64468 -25.40058 -23.50346 -22.70404 -21.76524 -20.85682 -20.08994 -18.22474 -17.60612 -17.29983 -16.60146 -16.20300 -16.10557 -15.50782 -15.29614 -15.12374 -14.95960 -14.50814 -14.39704 -13.58291 -13.56253 -13.49891 -13.35803 -13.13130 -12.95555 -12.80451 -12.50505 -12.35883 -12.15540 -12.02355 -11.90684 -11.76043 -11.26414 -11.22550 -10.96465 -10.82703 -10.81828 -10.60348 -10.46856 -10.35626 -10.12938 -9.85024 -9.76189 -9.37433 -9.00119 -8.61924 -8.41569 -8.29741 -6.71213 -5.68237 -3.09529 1.22994 1.33466 2.78684 3.22668 3.40064 3.46863 3.48891 3.64633 4.26712 4.38584 4.44257 4.54653 4.55995 4.63569 4.80061 4.89351 4.99462 5.04654 5.17099 5.30430 5.36789 5.42296 5.46537 5.48393 5.54031 5.67250 5.69080 5.77306 5.79129 5.83910 5.93362 5.94857 6.07700 6.22131 6.24347 6.27402 6.34734 6.35330 6.52342 6.63209 6.71943 6.93773 6.98397 7.03854 7.49088 7.68716 7.76748 7.86317 8.41555 8.48496 9.28006 9.93235 10.41993 11.37707 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.004170 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.586757 B = 6713.046474 C = 7974.649103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.599 5.599 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.000 4.000 6 N -0.904 5.904 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.150 3.850 12 C 0.094 3.906 13 N -0.608 5.608 14 C 0.076 3.924 15 C 0.531 3.469 16 O -0.531 6.531 17 C -0.135 4.135 18 H 0.095 0.905 19 C -0.119 4.119 20 C -0.133 4.133 21 C -0.051 4.051 22 H 0.109 0.891 23 C -0.088 4.088 24 C -0.084 4.084 25 C -0.143 4.143 26 C 0.101 3.899 27 F -0.140 7.140 28 C -0.152 4.152 29 C -0.078 4.078 30 H 0.023 0.977 31 H 0.048 0.952 32 H -0.002 1.002 33 H 0.251 0.749 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.100 0.900 45 H 0.125 0.875 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.812 -21.011 -2.808 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.322 5.322 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.550 5.550 7 Si 0.731 3.269 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.021 3.979 12 C -0.031 4.031 13 N -0.341 5.341 14 C -0.068 4.068 15 C 0.318 3.682 16 O -0.407 6.407 17 C -0.157 4.157 18 H 0.113 0.887 19 C -0.157 4.157 20 C -0.170 4.170 21 C -0.069 4.069 22 H 0.127 0.873 23 C -0.088 4.088 24 C -0.102 4.102 25 C -0.162 4.162 26 C 0.081 3.919 27 F -0.118 7.118 28 C -0.171 4.171 29 C -0.096 4.096 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.143 0.857 46 H 0.152 0.848 47 H 0.150 0.850 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.023 -20.799 -2.696 22.455 hybrid contribution 0.456 1.388 0.023 1.461 sum 8.480 -19.411 -2.674 21.350 Atomic orbital electron populations 1.20773 0.82364 0.96067 0.98815 1.43874 1.01995 1.00453 1.85928 1.19215 0.95802 0.84774 1.38606 0.91362 1.24910 0.97844 0.98155 0.98866 1.70143 1.18730 1.26352 1.39736 0.86243 0.78363 0.84548 0.77732 1.20415 1.21643 1.21843 1.20900 0.95856 0.88513 0.92651 1.22500 0.96636 0.82103 1.01848 1.47885 1.06548 1.06655 1.73016 1.21839 0.80480 1.03001 1.01485 1.19802 0.87713 0.84412 0.76239 1.90679 1.13714 1.87023 1.49255 1.22617 1.00703 0.93444 0.98907 0.88706 1.22683 0.99167 0.96438 0.97404 1.23074 0.98487 1.00500 0.94906 1.21389 0.99691 0.96148 0.89718 0.87348 1.19663 0.95167 0.97284 0.96721 1.20743 0.99479 0.94672 0.95273 1.21101 0.96491 1.01343 0.97242 1.17732 0.95200 0.92610 0.86315 1.91514 1.91897 1.76150 1.52248 1.21104 1.00333 0.96767 0.98919 1.20772 0.95777 0.99057 0.93958 0.95914 0.93314 0.98296 0.93846 0.94446 0.94075 0.90979 0.90714 0.92871 0.90613 0.91454 0.89506 0.90571 0.91355 0.88156 0.85673 0.84811 0.85011 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.39 8.99 59.85 0.54 4.92 16 2 N -0.60 -15.72 2.93 -181.11 -0.53 -16.25 16 3 C -0.25 -7.09 9.68 -15.06 -0.15 -7.23 16 4 H 0.07 1.83 7.88 -52.48 -0.41 1.41 16 5 C 0.00 0.01 5.01 -17.43 -0.09 -0.08 16 6 N -0.90 -27.20 10.69 55.49 0.59 -26.61 16 7 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 C 0.15 3.24 5.98 -4.04 -0.02 3.22 16 12 C 0.09 1.74 5.73 -4.04 -0.02 1.71 16 13 N -0.61 -8.82 2.87 -181.58 -0.52 -9.34 16 14 C 0.08 0.77 9.75 59.84 0.58 1.35 16 15 C 0.53 7.80 5.20 -10.99 -0.06 7.74 16 16 O -0.53 -9.91 14.77 5.55 0.08 -9.83 16 17 C -0.14 -1.38 3.37 -90.96 -0.31 -1.68 16 18 H 0.09 0.74 6.15 -51.93 -0.32 0.42 16 19 C -0.12 -1.08 7.47 -25.92 -0.19 -1.28 16 20 C -0.13 -1.26 6.20 -25.92 -0.16 -1.42 16 21 C -0.05 -0.48 3.97 -90.97 -0.36 -0.84 16 22 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 23 C -0.09 -1.05 4.39 -104.62 -0.46 -1.51 16 24 C -0.08 -1.03 8.77 -39.59 -0.35 -1.38 16 25 C -0.14 -2.04 10.03 -39.52 -0.40 -2.43 16 26 C 0.10 1.56 7.30 -39.42 -0.29 1.27 16 27 F -0.14 -2.38 17.27 2.25 0.04 -2.34 16 28 C -0.15 -2.09 10.03 -39.51 -0.40 -2.49 16 29 C -0.08 -0.97 9.02 -39.59 -0.36 -1.32 16 30 H 0.02 0.65 7.61 -51.93 -0.40 0.25 16 31 H 0.05 1.37 6.94 -51.93 -0.36 1.01 16 32 H 0.00 -0.04 8.06 -51.93 -0.42 -0.46 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.04 0.87 8.04 -51.93 -0.42 0.46 16 36 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 37 H 0.07 1.56 7.42 -51.93 -0.39 1.18 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.07 0.52 5.00 -51.93 -0.26 0.26 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 1.23 6.20 -51.93 -0.32 0.91 16 45 H 0.13 1.28 6.56 -52.49 -0.34 0.94 16 46 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 47 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 48 H 0.13 1.35 6.82 -52.48 -0.36 1.00 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -33.68 386.24 -9.37 -43.05 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.34 Total: -0.12 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.48 Total: -1.44 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.46 Total: -52.20 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.68 -9.37 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667604087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.507 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds