Wall clock time and date at job start Tue Mar 31 2020 18:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 119.99697 * 2 1 4 4 H 1.08005 * 119.99999 * 198.49776 * 3 2 1 5 5 C 1.38811 * 120.00293 * 18.49844 * 3 2 1 6 6 N 1.31619 * 119.99748 * 16.78328 * 5 3 2 7 7 Si 1.86799 * 120.00112 * 196.78430 * 5 3 2 8 8 H 1.48501 * 109.46960 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47108 * 119.99804 * 7 5 3 10 10 H 1.48501 * 109.47317 * 240.00042 * 7 5 3 11 11 C 1.46495 * 120.00053 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47559 * 90.00028 * 11 2 1 13 13 N 1.46495 * 109.47559 * 180.02562 * 12 11 2 14 14 C 1.46496 * 119.99863 * 270.00034 * 13 12 11 15 15 C 1.34772 * 120.00179 * 90.00264 * 13 12 11 16 16 O 1.21285 * 119.99859 * 359.97438 * 15 13 12 17 17 C 1.50694 * 120.00242 * 180.02562 * 15 13 12 18 18 H 1.08999 * 112.90891 * 345.18130 * 17 15 13 19 19 C 1.53781 * 113.61506 * 213.93390 * 17 15 13 20 20 C 1.53779 * 87.08078 * 270.88110 * 19 17 15 21 21 C 1.53776 * 87.08170 * 334.56776 * 20 19 17 22 22 H 1.09000 * 113.61348 * 270.88262 * 21 20 19 23 23 C 1.50694 * 113.61709 * 139.98222 * 21 20 19 24 24 C 1.38247 * 119.97942 * 204.63749 * 23 21 20 25 25 C 1.38194 * 120.02880 * 179.76782 * 24 23 21 26 26 C 1.38461 * 119.97262 * 0.49965 * 25 24 23 27 27 F 1.35103 * 120.02764 * 179.76693 * 26 25 24 28 28 C 1.38466 * 119.94808 * 359.75759 * 26 25 24 29 29 C 1.38192 * 119.97342 * 359.97438 * 28 26 25 30 30 H 1.08995 * 109.47594 * 272.24515 * 1 2 3 31 31 H 1.09003 * 109.46925 * 32.25234 * 1 2 3 32 32 H 1.09005 * 109.46628 * 152.25050 * 1 2 3 33 33 H 0.97003 * 119.99482 * 179.97438 * 6 5 3 34 34 H 1.09006 * 109.47437 * 330.00433 * 11 2 1 35 35 H 1.09004 * 109.47345 * 210.00484 * 11 2 1 36 36 H 1.09006 * 109.46415 * 59.99779 * 12 11 2 37 37 H 1.09004 * 109.47164 * 300.00567 * 12 11 2 38 38 H 1.09001 * 109.47242 * 270.00012 * 14 13 12 39 39 H 1.08998 * 109.47619 * 30.00001 * 14 13 12 40 40 H 1.09002 * 109.46943 * 149.99890 * 14 13 12 41 41 H 1.09006 * 113.61320 * 156.33126 * 19 17 15 42 42 H 1.09007 * 113.69013 * 25.44382 * 19 17 15 43 43 H 1.09001 * 113.61300 * 220.01402 * 20 19 17 44 44 H 1.08996 * 113.69240 * 89.13017 * 20 19 17 45 45 H 1.08000 * 119.98367 * 0.02562 * 24 23 21 46 46 H 1.07997 * 120.01430 * 180.25794 * 25 24 23 47 47 H 1.07998 * 120.00693 * 180.02562 * 28 26 25 48 48 H 1.08004 * 119.98488 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1878 1.2101 -0.2968 5 6 1.5094 2.3570 0.3814 6 7 0.3756 2.3002 1.0475 7 14 2.2568 4.0135 -0.0507 8 1 3.5237 3.8053 -0.7969 9 1 1.3060 4.7805 -0.8950 10 1 2.5347 4.7715 1.1957 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7111 -1.4417 13 7 3.1845 -2.9801 -1.4411 14 6 4.6495 -2.9806 -1.4409 15 6 2.5102 -4.1470 -1.4408 16 8 1.2974 -4.1465 -1.4406 17 6 3.2632 -5.4523 -1.4397 18 1 4.3161 -5.3351 -1.6959 19 6 2.5587 -6.5705 -2.2260 20 6 1.8337 -6.9263 -0.9174 21 6 3.0269 -6.2987 -0.1777 22 1 3.8309 -7.0043 0.0318 23 6 2.6302 -5.4867 1.0282 24 6 3.4587 -4.4787 1.4853 25 6 3.0937 -3.7303 2.5881 26 6 1.9026 -3.9970 3.2417 27 9 1.5469 -3.2690 4.3229 28 6 1.0761 -5.0103 2.7863 29 6 1.4406 -5.7537 1.6799 30 1 -0.3634 0.0403 1.0268 31 1 -0.3633 0.8691 -0.5484 32 1 -0.3633 -0.9095 -0.4785 33 1 -0.0716 3.1186 1.3143 34 1 1.6084 -2.0282 0.5147 35 1 3.1500 -1.1382 0.5144 36 1 3.0417 -0.9516 -1.9558 37 1 1.5002 -1.8416 -1.9556 38 1 5.0130 -2.9812 -2.4685 39 1 5.0132 -2.0907 -0.9274 40 1 5.0124 -3.8706 -0.9267 41 1 3.2348 -7.3504 -2.5766 42 1 1.8936 -6.2039 -3.0080 43 1 1.7326 -7.9990 -0.7520 44 1 0.8980 -6.3860 -0.7742 45 1 4.3896 -4.2735 0.9777 46 1 3.7391 -2.9402 2.9425 47 1 0.1466 -5.2189 3.2951 48 1 0.7962 -6.5444 1.3247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667604087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:55 Heat of formation + Delta-G solvation = -18.140456 kcal Electronic energy + Delta-G solvation = -30484.011307 eV Core-core repulsion = 26454.569644 eV Total energy + Delta-G solvation = -4029.441663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.91031 -42.00343 -39.80565 -38.47657 -37.46380 -36.29720 -33.49446 -32.13643 -31.75958 -30.57463 -28.04102 -27.79374 -27.16403 -26.23096 -25.03116 -23.79505 -22.83940 -22.42521 -21.35584 -19.26185 -18.79544 -18.68783 -18.21929 -17.38299 -17.21991 -16.87268 -16.63753 -16.36922 -16.10340 -15.88323 -15.49264 -15.35671 -15.08121 -14.59344 -14.50282 -14.34989 -14.25499 -13.94658 -13.89317 -13.71319 -13.37633 -13.14905 -13.03742 -12.86073 -12.76751 -12.70602 -12.65437 -12.49167 -12.13390 -12.10778 -11.92661 -11.86302 -11.66249 -11.41428 -11.08593 -10.70068 -10.48798 -10.03406 -9.68473 -9.45315 -8.81292 -7.85482 -5.30698 0.17747 0.30549 1.45694 1.47392 1.58121 1.70340 2.09908 2.52024 2.62328 3.29039 3.34072 3.47568 3.51194 3.72621 3.77613 3.80786 3.92647 3.96571 4.02952 4.17840 4.27303 4.36930 4.43298 4.46862 4.51735 4.64618 4.70286 4.74305 4.81332 4.87772 4.91882 4.93644 4.97917 5.03733 5.06765 5.10134 5.15086 5.19404 5.20564 5.28830 5.32301 5.50799 5.51720 5.59970 5.62870 5.66713 5.95532 6.27141 6.58626 7.09306 7.35357 7.81193 8.28150 9.20468 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.004170 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.586757 B = 6713.046474 C = 7974.649103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.616 5.616 3 C -0.260 4.260 4 H 0.082 0.918 5 C -0.058 4.058 6 N -0.944 5.944 7 Si 0.972 3.028 8 H -0.259 1.259 9 H -0.293 1.293 10 H -0.294 1.294 11 C 0.161 3.839 12 C 0.114 3.886 13 N -0.609 5.609 14 C 0.066 3.934 15 C 0.523 3.477 16 O -0.580 6.580 17 C -0.133 4.133 18 H 0.133 0.867 19 C -0.111 4.111 20 C -0.137 4.137 21 C -0.041 4.041 22 H 0.152 0.848 23 C -0.086 4.086 24 C -0.084 4.084 25 C -0.157 4.157 26 C 0.062 3.938 27 F -0.159 7.159 28 C -0.164 4.164 29 C -0.085 4.085 30 H -0.007 1.007 31 H 0.028 0.972 32 H 0.012 0.988 33 H 0.247 0.753 34 H 0.017 0.983 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.153 0.847 46 H 0.132 0.868 47 H 0.139 0.861 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.381 -23.154 -4.818 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.340 5.340 3 C -0.390 4.390 4 H 0.099 0.901 5 C -0.253 4.253 6 N -0.591 5.591 7 Si 0.800 3.200 8 H -0.183 1.183 9 H -0.220 1.220 10 H -0.221 1.221 11 C 0.034 3.966 12 C -0.012 4.012 13 N -0.342 5.342 14 C -0.075 4.075 15 C 0.312 3.688 16 O -0.460 6.460 17 C -0.154 4.154 18 H 0.150 0.850 19 C -0.149 4.149 20 C -0.175 4.175 21 C -0.059 4.059 22 H 0.169 0.831 23 C -0.086 4.086 24 C -0.101 4.101 25 C -0.176 4.176 26 C 0.043 3.957 27 F -0.138 7.138 28 C -0.182 4.182 29 C -0.103 4.103 30 H 0.011 0.989 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.145 0.855 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.171 0.829 46 H 0.150 0.850 47 H 0.157 0.843 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.661 -22.986 -4.726 26.204 hybrid contribution -0.675 1.961 0.631 2.168 sum 10.986 -21.025 -4.095 24.073 Atomic orbital electron populations 1.20420 0.83306 0.95624 0.96707 1.44114 1.01834 1.01850 1.86192 1.19628 0.96389 0.85369 1.37609 0.90052 1.25794 0.98541 1.01893 0.99034 1.70320 1.20495 1.26936 1.41320 0.85130 0.78116 0.79583 0.77162 1.18284 1.22007 1.22133 1.20897 0.94952 0.86109 0.94668 1.21843 0.96202 0.84528 0.98620 1.47934 1.08401 1.05079 1.72763 1.22172 0.77289 1.04556 1.03495 1.20741 0.87463 0.85822 0.74741 1.90671 1.16244 1.87813 1.51226 1.22654 1.02019 0.90822 0.99885 0.84952 1.22756 0.99165 0.96679 0.96286 1.23036 0.97174 1.01686 0.95567 1.21592 1.00730 0.95971 0.87645 0.83059 1.20083 0.94419 0.96971 0.97141 1.21041 1.00492 0.94141 0.94452 1.21275 0.96194 1.01963 0.98176 1.18146 0.96729 0.93918 0.86914 1.91451 1.92219 1.76827 1.53321 1.21323 1.00563 0.96699 0.99661 1.21088 0.96512 0.99269 0.93405 0.98890 0.95322 0.96981 0.94353 0.96498 0.93450 0.90462 0.93612 0.90612 0.90899 0.88156 0.85549 0.92915 0.88734 0.91729 0.82933 0.84961 0.84322 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.32 8.99 127.77 1.15 11.47 16 2 N -0.62 -33.07 2.93 -726.92 -2.13 -35.20 16 3 C -0.26 -14.55 9.68 84.03 0.81 -13.73 16 4 H 0.08 4.26 7.88 -2.91 -0.02 4.23 16 5 C -0.06 -3.35 5.01 84.86 0.43 -2.92 16 6 N -0.94 -58.57 10.69 21.65 0.23 -58.34 16 7 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 8 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 11 C 0.16 7.07 5.98 86.38 0.52 7.58 16 12 C 0.11 4.19 5.73 86.38 0.49 4.68 16 13 N -0.61 -16.38 2.87 -846.77 -2.43 -18.81 16 14 C 0.07 1.07 9.75 127.77 1.25 2.32 16 15 C 0.52 14.35 5.20 87.66 0.46 14.80 16 16 O -0.58 -21.82 14.77 -3.05 -0.04 -21.87 16 17 C -0.13 -2.11 3.37 -11.02 -0.04 -2.14 16 18 H 0.13 1.15 6.15 -2.39 -0.01 1.13 16 19 C -0.11 -1.56 7.47 31.12 0.23 -1.33 16 20 C -0.14 -2.17 6.20 31.12 0.19 -1.98 16 21 C -0.04 -0.58 3.97 -11.02 -0.04 -0.63 16 22 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 23 C -0.09 -1.85 4.39 -19.86 -0.09 -1.94 16 24 C -0.08 -1.90 8.77 22.26 0.20 -1.70 16 25 C -0.16 -4.54 10.03 22.31 0.22 -4.32 16 26 C 0.06 2.02 7.30 22.38 0.16 2.18 16 27 F -0.16 -5.88 17.27 44.97 0.78 -5.10 16 28 C -0.16 -4.68 10.03 22.31 0.22 -4.46 16 29 C -0.08 -2.06 9.02 22.26 0.20 -1.86 16 30 H -0.01 -0.44 7.61 -2.39 -0.02 -0.46 16 31 H 0.03 1.67 6.94 -2.39 -0.02 1.65 16 32 H 0.01 0.61 8.06 -2.38 -0.02 0.59 16 33 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.02 0.80 8.07 -2.38 -0.02 0.78 16 35 H 0.05 2.00 8.04 -2.38 -0.02 1.98 16 36 H 0.08 2.76 8.07 -2.38 -0.02 2.74 16 37 H 0.05 1.95 7.42 -2.38 -0.02 1.93 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.26 8.07 -2.39 -0.02 1.24 16 40 H 0.10 0.96 5.00 -2.39 -0.01 0.95 16 41 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.05 1.02 8.05 -2.38 -0.02 1.00 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 1.53 6.20 -2.39 -0.01 1.51 16 45 H 0.15 2.51 6.56 -2.91 -0.02 2.49 16 46 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 47 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 48 H 0.15 2.95 6.82 -2.91 -0.02 2.93 16 Total: -1.00 -78.41 386.24 5.75 -72.66 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.95 Total: 12.91 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 6.36 Total: 6.04 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -4.33 Total: -112.35 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.04 Total: -21.87 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.78 Total: -5.10 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -78.41 5.75 -72.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667604087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.518 kcal (2) G-P(sol) polarization free energy of solvation -78.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds