Wall clock time and date at job start Tue Mar 31 2020 18:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47369 * 2 1 4 4 N 1.46503 * 109.47100 * 119.99618 * 2 1 3 5 5 C 1.36936 * 120.00279 * 275.00111 * 4 2 1 6 6 H 1.08000 * 119.99751 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00280 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99947 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99985 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47025 * 270.00048 * 9 7 5 11 11 H 1.48499 * 109.47063 * 149.99895 * 9 7 5 12 12 H 1.48498 * 109.47006 * 30.00190 * 9 7 5 13 13 C 1.52995 * 109.46925 * 239.99374 * 2 1 3 14 14 H 1.08999 * 109.47481 * 299.99971 * 13 2 1 15 15 C 1.53005 * 109.47281 * 180.02562 * 13 2 1 16 16 N 1.46503 * 109.47032 * 60.00203 * 13 2 1 17 17 C 1.34777 * 119.99763 * 204.99498 * 16 13 2 18 18 O 1.21275 * 120.00350 * 354.79436 * 17 16 13 19 19 C 1.50703 * 119.99705 * 174.79016 * 17 16 13 20 20 C 1.50703 * 112.84791 * 76.77196 * 19 17 16 21 21 C 1.38230 * 120.00178 * 246.16620 * 20 19 17 22 22 C 1.38236 * 120.00193 * 179.78865 * 21 20 19 23 23 C 1.38240 * 119.99600 * 0.46361 * 22 21 20 24 24 C 1.38233 * 120.00402 * 359.76946 * 23 22 21 25 25 C 1.38237 * 119.99766 * 0.02562 * 24 23 22 26 26 C 1.53774 * 113.61575 * 305.57943 * 19 17 16 27 27 C 1.53781 * 87.08203 * 270.88096 * 26 19 17 28 28 H 1.09000 * 113.61554 * 89.11607 * 27 26 19 29 29 F 1.39900 * 113.61851 * 220.01859 * 27 26 19 30 30 C 1.53780 * 87.08003 * 334.56695 * 27 26 19 31 31 H 1.08995 * 109.46999 * 60.00138 * 1 2 3 32 32 H 1.08999 * 109.47017 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46791 * 300.00144 * 1 2 3 34 34 H 0.97010 * 119.99863 * 94.99686 * 4 2 1 35 35 H 0.97007 * 120.00034 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46761 * 300.00316 * 15 13 2 37 37 H 1.08997 * 109.46758 * 59.99804 * 15 13 2 38 38 H 1.08994 * 109.47530 * 180.02562 * 15 13 2 39 39 H 0.96996 * 119.99791 * 25.00265 * 16 13 2 40 40 H 1.08000 * 120.00214 * 0.02562 * 21 20 19 41 41 H 1.08001 * 120.00271 * 180.25789 * 22 21 20 42 42 H 1.08006 * 119.99730 * 179.78959 * 23 22 21 43 43 H 1.07997 * 120.00667 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.00291 * 179.97438 * 25 24 23 45 45 H 1.09001 * 113.61943 * 25.43223 * 26 19 17 46 46 H 1.08998 * 113.61607 * 156.25203 * 26 19 17 47 47 H 1.08993 * 113.61507 * 270.88354 * 30 27 26 48 48 H 1.09001 * 113.61740 * 139.97814 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6123 -0.6615 3.5091 8 7 2.7385 -0.0048 4.6426 9 14 3.0566 -2.4740 3.4253 10 1 1.8596 -3.2924 3.7453 11 1 4.1325 -2.7658 4.4064 12 1 3.5311 -2.8046 2.0575 13 6 2.0400 -0.7214 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7220 -1.2489 16 7 1.5516 -0.0308 -2.4454 17 6 1.4230 -0.7033 -3.6063 18 8 1.7995 -1.8534 -3.6859 19 6 0.8111 -0.0261 -4.8055 20 6 1.7581 0.9298 -5.4842 21 6 1.4920 2.2862 -5.4799 22 6 2.3629 3.1634 -6.0987 23 6 3.4950 2.6831 -6.7302 24 6 3.7586 1.3262 -6.7387 25 6 2.8899 0.4494 -6.1162 26 6 -0.5783 0.5735 -4.5321 27 6 -1.1603 -0.7906 -4.9389 28 1 -1.2568 -1.4894 -4.1080 29 9 -2.3245 -0.6961 -5.7089 30 6 0.1149 -0.9976 -5.7731 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6318 1.1527 35 1 3.0618 -0.4620 5.4347 36 1 3.9337 0.3056 -1.2487 37 1 3.9329 -1.2360 -0.3589 38 1 3.9333 -1.2355 -2.1390 39 1 1.3210 0.9103 -2.4019 40 1 0.6057 2.6611 -4.9898 41 1 2.1572 4.2236 -6.0918 42 1 4.1737 3.3682 -7.2166 43 1 4.6428 0.9509 -7.2324 44 1 3.0956 -0.6107 -6.1232 45 1 -0.7469 0.8255 -3.4851 46 1 -0.8455 1.3835 -5.2107 47 1 0.0366 -0.6180 -6.7918 48 1 0.5060 -2.0140 -5.7280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674761988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:09 Heat of formation + Delta-G solvation = -29.891377 kcal Electronic energy + Delta-G solvation = -29555.207310 eV Core-core repulsion = 25525.256089 eV Total energy + Delta-G solvation = -4029.951221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -47.81282 -41.20291 -39.13128 -37.68060 -36.59002 -34.11754 -31.89819 -31.39896 -31.21441 -29.85631 -28.95027 -26.41701 -26.09178 -23.96018 -23.21737 -22.61069 -21.95604 -21.39258 -20.32011 -19.23570 -17.99614 -17.70942 -16.92791 -16.54985 -16.08847 -15.78337 -15.40331 -14.85199 -14.84290 -14.69811 -14.56618 -14.23436 -13.93364 -13.68606 -13.57496 -13.11510 -13.01461 -12.98111 -12.86588 -12.57517 -12.33220 -12.20239 -11.94502 -11.80211 -11.64542 -11.41489 -11.27183 -11.15465 -10.96035 -10.83250 -10.77638 -10.60459 -10.35208 -10.02162 -9.95006 -9.63562 -9.19685 -9.13307 -8.96093 -8.89395 -7.35082 -5.82156 -3.18876 1.00756 1.12542 2.49454 3.02311 3.35144 3.38673 3.43702 3.46347 3.84232 3.93564 4.08291 4.22119 4.45733 4.54959 4.60443 4.71773 4.74233 4.86040 4.92038 5.10609 5.22930 5.23085 5.25346 5.30756 5.37033 5.38351 5.47437 5.58774 5.60375 5.65597 5.67547 5.75846 5.91019 5.95483 6.04074 6.17778 6.19220 6.23418 6.24356 6.27070 6.31981 6.46841 6.63322 6.69360 6.74209 6.87154 7.50183 7.91627 8.16127 8.36106 9.13424 9.86011 10.04601 11.35804 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.003179 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.617802 B = 8805.458509 C = 9653.848396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.174 3.826 3 H 0.059 0.941 4 N -0.742 5.742 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.134 3.866 14 H 0.083 0.917 15 C -0.154 4.154 16 N -0.708 5.708 17 C 0.541 3.459 18 O -0.533 6.533 19 C -0.064 4.064 20 C -0.064 4.064 21 C -0.112 4.112 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.104 4.104 26 C -0.150 4.150 27 C 0.066 3.934 28 H 0.112 0.888 29 F -0.205 7.205 30 C -0.132 4.132 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.362 0.638 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.400 0.600 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 4.435 -25.659 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.064 3.936 3 H 0.077 0.923 4 N -0.385 5.385 5 C -0.374 4.374 6 H 0.109 0.891 7 C -0.188 4.188 8 N -0.579 5.579 9 Si 0.712 3.288 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.029 3.971 14 H 0.102 0.898 15 C -0.213 4.213 16 N -0.359 5.359 17 C 0.325 3.675 18 O -0.409 6.409 19 C -0.067 4.067 20 C -0.065 4.065 21 C -0.130 4.130 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.187 4.187 27 C 0.030 3.970 28 H 0.130 0.870 29 F -0.185 7.185 30 C -0.169 4.169 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.195 0.805 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.234 0.766 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.109 0.891 46 H 0.127 0.873 47 H 0.121 0.879 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.411 3.771 -25.496 25.998 hybrid contribution 0.250 -0.777 0.147 0.830 sum -3.161 2.993 -25.348 25.719 Atomic orbital electron populations 1.22426 0.98512 1.01138 1.00414 1.20356 0.92303 0.95904 0.85083 0.92260 1.42644 1.79787 1.09451 1.06650 1.19006 1.37418 0.95613 0.85340 0.89133 1.24641 1.01182 0.97461 0.95528 1.69693 1.52377 1.35594 1.00276 0.86601 0.78230 0.86823 0.77180 1.21041 1.21693 1.20192 1.21392 0.94639 0.97347 0.83718 0.89849 1.22060 0.94872 1.02193 1.02129 1.45965 1.66451 1.13964 1.09488 1.19586 0.78493 0.86225 0.83188 1.90706 1.49179 1.17543 1.83505 1.20605 0.93895 0.96943 0.95305 1.19158 0.95329 0.93068 0.98909 1.21077 0.99899 0.92271 0.99727 1.21143 0.94706 0.99704 0.98014 1.21207 0.97461 0.95588 0.99448 1.21155 0.99347 0.93467 0.99555 1.21058 0.93775 1.00286 0.97073 1.23814 0.92743 0.97885 1.04300 1.23083 0.80775 0.98950 0.94219 0.86998 1.92804 1.51430 1.97160 1.77124 1.23575 0.93556 1.01229 0.98585 0.94323 0.93477 0.92034 0.80459 0.92984 0.92615 0.90709 0.93119 0.76589 0.85528 0.85809 0.86044 0.85923 0.85777 0.89097 0.87327 0.87911 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.33 37.16 0.35 -2.28 16 2 C 0.17 3.05 2.52 -67.93 -0.17 2.88 16 3 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 4 N -0.74 -16.54 4.23 -53.43 -0.23 -16.77 16 5 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 6 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 7 C 0.01 0.23 5.50 -17.44 -0.10 0.13 16 8 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16 9 Si 0.88 21.72 27.74 -169.99 -4.71 17.01 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 13 C 0.13 2.07 2.17 -67.93 -0.15 1.92 16 14 H 0.08 1.42 7.66 -51.93 -0.40 1.02 16 15 C -0.15 -2.49 9.33 37.16 0.35 -2.14 16 16 N -0.71 -8.73 4.14 -53.80 -0.22 -8.96 16 17 C 0.54 6.84 6.25 -10.98 -0.07 6.78 16 18 O -0.53 -8.58 15.79 5.56 0.09 -8.49 16 19 C -0.06 -0.62 0.93 -156.00 -0.14 -0.76 16 20 C -0.06 -0.60 4.87 -104.62 -0.51 -1.11 16 21 C -0.11 -0.91 9.05 -39.58 -0.36 -1.27 16 22 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 25 C -0.10 -1.03 9.47 -39.58 -0.37 -1.40 16 26 C -0.15 -1.20 6.13 -25.92 -0.16 -1.36 16 27 C 0.07 0.62 5.39 -25.92 -0.14 0.48 16 28 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 29 F -0.20 -2.25 17.41 2.25 0.04 -2.21 16 30 C -0.13 -1.23 6.91 -25.92 -0.18 -1.41 16 31 H 0.04 0.48 7.44 -51.93 -0.39 0.10 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.36 8.12 5.44 -40.82 -0.22 7.90 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.34 7.44 -51.93 -0.39 0.96 16 38 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.40 4.12 8.13 -40.82 -0.33 3.78 16 40 H 0.13 0.81 6.43 -52.49 -0.34 0.47 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.09 0.67 7.71 -51.93 -0.40 0.27 16 46 H 0.11 0.74 6.81 -51.93 -0.35 0.39 16 47 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 48 H 0.10 1.01 7.42 -51.93 -0.39 0.63 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -32.00 392.31 -8.79 -40.79 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.43 Total: 10.92 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.00 Total: -10.35 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.33 Total: -53.58 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.00 -8.79 -40.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674761988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.902 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds