Wall clock time and date at job start Tue Mar 31 2020 18:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47369 * 2 1 4 4 N 1.46503 * 109.47100 * 119.99618 * 2 1 3 5 5 C 1.36936 * 120.00279 * 275.00111 * 4 2 1 6 6 H 1.08000 * 119.99751 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00280 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99947 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99985 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47025 * 270.00048 * 9 7 5 11 11 H 1.48499 * 109.47063 * 149.99895 * 9 7 5 12 12 H 1.48498 * 109.47006 * 30.00190 * 9 7 5 13 13 C 1.52995 * 109.46925 * 239.99374 * 2 1 3 14 14 H 1.08999 * 109.47481 * 299.99971 * 13 2 1 15 15 C 1.53005 * 109.47281 * 180.02562 * 13 2 1 16 16 N 1.46503 * 109.47032 * 60.00203 * 13 2 1 17 17 C 1.34777 * 119.99763 * 204.99498 * 16 13 2 18 18 O 1.21275 * 120.00350 * 354.79436 * 17 16 13 19 19 C 1.50703 * 119.99705 * 174.79016 * 17 16 13 20 20 C 1.50703 * 112.84791 * 76.77196 * 19 17 16 21 21 C 1.38230 * 120.00178 * 246.16620 * 20 19 17 22 22 C 1.38236 * 120.00193 * 179.78865 * 21 20 19 23 23 C 1.38240 * 119.99600 * 0.46361 * 22 21 20 24 24 C 1.38233 * 120.00402 * 359.76946 * 23 22 21 25 25 C 1.38237 * 119.99766 * 0.02562 * 24 23 22 26 26 C 1.53774 * 113.61575 * 305.57943 * 19 17 16 27 27 C 1.53781 * 87.08203 * 270.88096 * 26 19 17 28 28 H 1.09000 * 113.61554 * 89.11607 * 27 26 19 29 29 F 1.39900 * 113.61851 * 220.01859 * 27 26 19 30 30 C 1.53780 * 87.08003 * 334.56695 * 27 26 19 31 31 H 1.08995 * 109.46999 * 60.00138 * 1 2 3 32 32 H 1.08999 * 109.47017 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46791 * 300.00144 * 1 2 3 34 34 H 0.97010 * 119.99863 * 94.99686 * 4 2 1 35 35 H 0.97007 * 120.00034 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46761 * 300.00316 * 15 13 2 37 37 H 1.08997 * 109.46758 * 59.99804 * 15 13 2 38 38 H 1.08994 * 109.47530 * 180.02562 * 15 13 2 39 39 H 0.96996 * 119.99791 * 25.00265 * 16 13 2 40 40 H 1.08000 * 120.00214 * 0.02562 * 21 20 19 41 41 H 1.08001 * 120.00271 * 180.25789 * 22 21 20 42 42 H 1.08006 * 119.99730 * 179.78959 * 23 22 21 43 43 H 1.07997 * 120.00667 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.00291 * 179.97438 * 25 24 23 45 45 H 1.09001 * 113.61943 * 25.43223 * 26 19 17 46 46 H 1.08998 * 113.61607 * 156.25203 * 26 19 17 47 47 H 1.08993 * 113.61507 * 270.88354 * 30 27 26 48 48 H 1.09001 * 113.61740 * 139.97814 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6123 -0.6615 3.5091 8 7 2.7385 -0.0048 4.6426 9 14 3.0566 -2.4740 3.4253 10 1 1.8596 -3.2924 3.7453 11 1 4.1325 -2.7658 4.4064 12 1 3.5311 -2.8046 2.0575 13 6 2.0400 -0.7214 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7220 -1.2489 16 7 1.5516 -0.0308 -2.4454 17 6 1.4230 -0.7033 -3.6063 18 8 1.7995 -1.8534 -3.6859 19 6 0.8111 -0.0261 -4.8055 20 6 1.7581 0.9298 -5.4842 21 6 1.4920 2.2862 -5.4799 22 6 2.3629 3.1634 -6.0987 23 6 3.4950 2.6831 -6.7302 24 6 3.7586 1.3262 -6.7387 25 6 2.8899 0.4494 -6.1162 26 6 -0.5783 0.5735 -4.5321 27 6 -1.1603 -0.7906 -4.9389 28 1 -1.2568 -1.4894 -4.1080 29 9 -2.3245 -0.6961 -5.7089 30 6 0.1149 -0.9976 -5.7731 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6318 1.1527 35 1 3.0618 -0.4620 5.4347 36 1 3.9337 0.3056 -1.2487 37 1 3.9329 -1.2360 -0.3589 38 1 3.9333 -1.2355 -2.1390 39 1 1.3210 0.9103 -2.4019 40 1 0.6057 2.6611 -4.9898 41 1 2.1572 4.2236 -6.0918 42 1 4.1737 3.3682 -7.2166 43 1 4.6428 0.9509 -7.2324 44 1 3.0956 -0.6107 -6.1232 45 1 -0.7469 0.8255 -3.4851 46 1 -0.8455 1.3835 -5.2107 47 1 0.0366 -0.6180 -6.7918 48 1 0.5060 -2.0140 -5.7280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674761988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:07 Heat of formation + Delta-G solvation = -48.072888 kcal Electronic energy + Delta-G solvation = -29555.995720 eV Core-core repulsion = 25525.256089 eV Total energy + Delta-G solvation = -4030.739630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.60548 -42.07144 -39.99695 -38.72398 -37.74338 -35.68769 -33.70050 -32.11072 -31.83373 -31.28941 -30.50017 -27.10384 -26.92408 -25.71189 -24.44097 -23.33795 -22.74972 -22.41164 -21.70361 -20.34912 -19.69770 -18.57349 -17.74400 -17.47447 -17.18138 -16.56014 -16.48477 -16.09145 -15.93603 -15.70257 -15.50751 -15.45787 -15.20941 -14.89799 -14.65595 -14.28984 -14.24638 -13.96462 -13.75471 -13.65802 -13.53472 -13.26837 -13.18078 -13.05094 -12.77444 -12.63741 -12.55722 -12.36449 -12.26990 -12.07152 -11.91546 -11.80316 -11.51961 -11.49121 -11.31003 -11.04391 -10.96862 -10.16675 -9.81689 -9.63874 -9.32342 -8.00871 -5.33915 0.36494 0.50351 1.39284 1.40077 1.47019 1.50141 1.98910 2.48792 2.81205 3.12064 3.21093 3.31784 3.36348 3.48537 3.57532 3.68587 3.79580 3.88012 4.10832 4.12698 4.14178 4.22230 4.28719 4.32690 4.56674 4.58549 4.63095 4.64610 4.70402 4.73126 4.77287 4.83743 4.86101 4.91958 5.01354 5.06423 5.15245 5.15959 5.21725 5.27139 5.46673 5.51297 5.57587 5.62650 5.64192 5.79507 6.09608 6.22597 6.49422 7.07892 7.15943 7.83732 8.01026 9.20330 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.003179 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.617802 B = 8805.458509 C = 9653.848396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.060 0.940 4 N -0.746 5.746 5 C -0.220 4.220 6 H 0.064 0.936 7 C -0.059 4.059 8 N -0.982 5.982 9 Si 0.943 3.057 10 H -0.282 1.282 11 H -0.298 1.298 12 H -0.254 1.254 13 C 0.148 3.852 14 H 0.071 0.929 15 C -0.149 4.149 16 N -0.698 5.698 17 C 0.543 3.457 18 O -0.569 6.569 19 C -0.056 4.056 20 C -0.074 4.074 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.137 4.137 27 C 0.061 3.939 28 H 0.108 0.892 29 F -0.213 7.213 30 C -0.130 4.130 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.363 0.637 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.413 0.587 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.133 0.867 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.128 0.872 47 H 0.113 0.887 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 5.449 -27.915 28.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.078 0.922 4 N -0.390 5.390 5 C -0.351 4.351 6 H 0.082 0.918 7 C -0.250 4.250 8 N -0.633 5.633 9 Si 0.772 3.228 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.179 1.179 13 C 0.043 3.957 14 H 0.090 0.910 15 C -0.207 4.207 16 N -0.350 5.350 17 C 0.329 3.671 18 O -0.448 6.448 19 C -0.059 4.059 20 C -0.075 4.075 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.174 4.174 27 C 0.025 3.975 28 H 0.126 0.874 29 F -0.194 7.194 30 C -0.168 4.168 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.196 0.804 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.250 0.750 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.151 0.849 44 H 0.128 0.872 45 H 0.122 0.878 46 H 0.146 0.854 47 H 0.131 0.869 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.148 4.807 -27.825 28.540 hybrid contribution 0.471 -1.004 0.724 1.324 sum -3.677 3.803 -27.101 27.613 Atomic orbital electron populations 1.22293 0.96702 1.01267 1.01366 1.20534 0.93386 0.95620 0.84170 0.92194 1.42659 1.80014 1.09514 1.06785 1.18973 1.34724 0.94602 0.86769 0.91756 1.25351 1.02555 1.01782 0.95360 1.69855 1.54851 1.37461 1.01129 0.85582 0.77628 0.81684 0.77930 1.20836 1.22530 1.17861 1.20978 0.94085 0.96674 0.83991 0.91039 1.21990 0.95361 1.02228 1.01160 1.45762 1.66212 1.14487 1.08503 1.20080 0.77626 0.85730 0.83691 1.90696 1.50640 1.19354 1.84121 1.20417 0.94636 0.97072 0.93818 1.19162 0.95217 0.93653 0.99451 1.21339 1.00678 0.91560 0.99483 1.21495 0.94283 1.00916 0.97208 1.21520 0.97951 0.95480 0.99167 1.21358 0.99626 0.93975 0.99619 1.21101 0.94809 0.99929 0.98352 1.23838 0.90568 0.97438 1.05558 1.23158 0.80318 1.00077 0.93995 0.87429 1.92788 1.51947 1.97251 1.77390 1.23578 0.93519 1.00501 0.99235 0.90310 0.93766 0.94127 0.80365 0.93461 0.92060 0.92620 0.93095 0.74980 0.83373 0.83537 0.84101 0.84922 0.87213 0.87843 0.85375 0.86872 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 9.33 71.98 0.67 -3.99 16 2 C 0.17 5.75 2.52 44.99 0.11 5.86 16 3 H 0.06 2.03 8.08 -2.39 -0.02 2.02 16 4 N -0.75 -32.66 4.23 -322.95 -1.37 -34.03 16 5 C -0.22 -11.89 10.41 84.03 0.87 -11.01 16 6 H 0.06 3.78 8.06 -2.91 -0.02 3.75 16 7 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 8 N -0.98 -61.76 13.97 21.65 0.30 -61.46 16 9 Si 0.94 45.10 27.74 68.60 1.90 47.01 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.25 -11.05 6.52 99.48 0.65 -10.41 16 13 C 0.15 4.36 2.17 44.99 0.10 4.46 16 14 H 0.07 2.34 7.66 -2.39 -0.02 2.32 16 15 C -0.15 -4.65 9.33 71.98 0.67 -3.98 16 16 N -0.70 -15.65 4.14 -442.53 -1.83 -17.48 16 17 C 0.54 12.90 6.25 87.66 0.55 13.45 16 18 O -0.57 -18.06 15.79 -3.02 -0.05 -18.11 16 19 C -0.06 -0.96 0.93 -53.15 -0.05 -1.01 16 20 C -0.07 -1.24 4.87 -19.86 -0.10 -1.34 16 21 C -0.11 -1.46 9.05 22.27 0.20 -1.26 16 22 C -0.12 -1.47 10.05 22.27 0.22 -1.25 16 23 C -0.12 -1.63 10.05 22.27 0.22 -1.41 16 24 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 25 C -0.12 -2.33 9.47 22.27 0.21 -2.12 16 26 C -0.14 -1.74 6.13 31.12 0.19 -1.55 16 27 C 0.06 1.03 5.39 31.12 0.17 1.19 16 28 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 29 F -0.21 -4.28 17.41 44.97 0.78 -3.50 16 30 C -0.13 -2.29 6.91 31.12 0.22 -2.07 16 31 H 0.08 1.69 7.44 -2.39 -0.02 1.68 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.36 15.81 5.44 -92.70 -0.50 15.31 16 35 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.95 7.44 -2.39 -0.02 1.93 16 38 H 0.05 1.58 8.09 -2.39 -0.02 1.56 16 39 H 0.41 7.13 8.13 -92.71 -0.75 6.38 16 40 H 0.15 1.21 6.43 -2.91 -0.02 1.19 16 41 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.11 2.30 8.06 -2.91 -0.02 2.27 16 45 H 0.10 1.09 7.71 -2.39 -0.02 1.07 16 46 H 0.13 1.19 6.81 -2.39 -0.02 1.18 16 47 H 0.11 1.74 8.10 -2.39 -0.02 1.72 16 48 H 0.08 1.70 7.42 -2.39 -0.02 1.68 16 Total: -1.00 -70.43 392.31 4.35 -66.08 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -0.35 Total: 32.24 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.95 Total: -10.76 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -2.90 Total: -112.97 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.05 Total: -18.11 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.01 kcal Total: -70.43 4.35 -66.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674761988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.010 kcal (2) G-P(sol) polarization free energy of solvation -70.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds