Wall clock time and date at job start Tue Mar 31 2020 18:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00142 * 2 1 4 4 C 1.52999 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47005 * 65.00335 * 4 3 2 6 6 C 1.36939 * 120.00082 * 269.99472 * 5 4 3 7 7 H 1.07997 * 119.99810 * 141.45367 * 6 5 4 8 8 C 1.38814 * 120.00037 * 321.46594 * 6 5 4 9 9 N 1.31619 * 119.99487 * 338.81872 * 8 6 5 10 10 Si 1.86793 * 119.99961 * 158.82402 * 8 6 5 11 11 H 1.48504 * 109.47380 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47534 * 119.99692 * 10 8 6 13 13 H 1.48506 * 109.47049 * 239.99810 * 10 8 6 14 14 C 1.46499 * 120.00236 * 90.00145 * 5 4 3 15 15 C 1.53002 * 109.47237 * 264.70750 * 14 5 4 16 16 N 1.46499 * 109.47352 * 179.97438 * 15 14 5 17 17 C 1.34780 * 119.99988 * 180.02562 * 16 15 14 18 18 O 1.21284 * 119.99977 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99982 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.47165 * 59.99813 * 19 17 16 21 21 C 1.53001 * 109.46819 * 179.97438 * 19 17 16 22 22 C 1.53005 * 109.46966 * 179.97438 * 21 19 17 23 23 C 1.52995 * 109.47125 * 300.00350 * 22 21 19 24 24 C 1.53001 * 109.47484 * 59.99967 * 23 22 21 25 25 F 1.39897 * 109.47283 * 59.99403 * 24 23 22 26 26 F 1.39903 * 109.47307 * 180.02562 * 24 23 22 27 27 C 1.53001 * 109.46950 * 299.99629 * 19 17 16 28 28 H 1.09002 * 109.47062 * 300.00146 * 1 2 3 29 29 H 1.09001 * 109.47510 * 59.99424 * 1 2 3 30 30 H 1.09000 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47078 * 60.00534 * 3 2 1 32 32 H 1.09001 * 109.47259 * 300.00281 * 3 2 1 33 33 H 1.08992 * 109.47198 * 305.00096 * 4 3 2 34 34 H 1.08999 * 109.47085 * 185.00066 * 4 3 2 35 35 H 0.97002 * 119.99196 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47459 * 144.70670 * 14 5 4 37 37 H 1.09003 * 109.46933 * 24.70268 * 14 5 4 38 38 H 1.09003 * 109.46945 * 59.99835 * 15 14 5 39 39 H 1.08996 * 109.47041 * 299.99933 * 15 14 5 40 40 H 0.96996 * 120.00089 * 0.02562 * 16 15 14 41 41 H 1.09003 * 109.47173 * 60.00102 * 21 19 17 42 42 H 1.08996 * 109.47339 * 299.99878 * 21 19 17 43 43 H 1.09003 * 109.46926 * 60.00153 * 22 21 19 44 44 H 1.08995 * 109.47322 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.47151 * 179.97438 * 23 22 21 46 46 H 1.09003 * 109.47058 * 299.99722 * 23 22 21 47 47 H 1.08998 * 109.46759 * 60.00326 * 27 19 17 48 48 H 1.08994 * 109.47150 * 300.00174 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0967 -0.7970 -1.3370 7 1 3.8066 -1.3099 -2.2420 8 6 4.5922 -1.5177 -0.2591 9 7 5.3199 -0.9146 0.6570 10 14 4.2263 -3.3433 -0.1088 11 1 3.3935 -3.7776 -1.2590 12 1 5.5011 -4.1050 -0.1047 13 1 3.4930 -3.5986 1.1571 14 6 4.2863 1.4007 -2.4148 15 6 3.0582 1.4884 -3.3231 16 7 3.3687 2.3251 -4.4849 17 6 2.4302 2.5456 -5.4267 18 8 1.3287 2.0509 -5.3127 19 6 2.7497 3.4059 -6.6220 20 1 3.5795 2.9657 -7.1751 21 6 1.5215 3.4935 -7.5302 22 6 1.8458 4.3675 -8.7435 23 6 2.2330 5.7706 -8.2725 24 6 3.4612 5.6830 -7.3643 25 9 4.5266 5.1187 -8.0739 26 9 3.8149 6.9660 -6.9331 27 6 3.1378 4.8090 -6.1514 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5682 0.8408 34 1 3.9785 2.1765 0.0889 35 1 5.6665 -1.4184 1.4100 36 1 5.1163 0.9608 -2.9675 37 1 4.5623 2.4005 -2.0795 38 1 2.2281 1.9283 -2.7704 39 1 2.7822 0.4886 -3.6584 40 1 4.2497 2.7204 -4.5763 41 1 0.6915 3.9335 -6.9774 42 1 1.2454 2.4938 -7.8655 43 1 2.6759 3.9279 -9.2965 44 1 0.9710 4.4296 -9.3908 45 1 2.4644 6.3931 -9.1368 46 1 1.4029 6.2103 -7.7195 47 1 4.0129 4.7461 -5.5046 48 1 2.3081 5.2492 -5.5984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677317057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:13 Heat of formation + Delta-G solvation = -179.254278 kcal Electronic energy + Delta-G solvation = -30117.938892 eV Core-core repulsion = 25650.741585 eV Total energy + Delta-G solvation = -4467.197307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.26013 -47.24387 -40.03750 -37.47462 -37.13603 -35.74918 -34.22444 -32.01388 -31.24794 -30.22728 -29.39574 -27.41256 -25.63520 -24.61914 -23.66262 -23.01160 -21.72619 -20.81071 -20.41239 -19.79691 -17.92725 -17.17649 -16.81801 -16.67432 -16.37961 -15.83128 -15.59915 -15.40631 -14.97203 -14.70178 -14.59874 -14.39584 -14.03738 -13.92788 -13.79290 -13.58786 -13.52146 -13.31270 -13.11615 -12.92444 -12.63768 -12.56928 -12.05659 -11.95524 -11.79808 -11.63158 -11.19300 -11.17948 -11.07929 -10.89919 -10.79573 -10.77782 -10.68574 -10.58761 -10.05520 -9.95691 -9.73724 -9.64238 -8.87946 -8.65788 -8.40153 -6.57958 -5.74641 -3.32330 2.67436 3.23640 3.44031 3.46649 3.52159 3.56953 3.74445 3.95349 4.00591 4.50449 4.54466 4.57301 4.67383 4.70295 4.79304 4.89322 5.00190 5.08447 5.30444 5.36777 5.43182 5.48118 5.50984 5.53702 5.65184 5.76629 5.79646 5.83528 5.85301 5.89800 6.01175 6.07331 6.14975 6.25900 6.29788 6.54838 6.64914 6.65705 6.69685 6.93926 7.61219 7.68657 7.88935 8.08329 8.36096 8.57825 9.20769 9.83857 10.38259 11.27834 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.002608 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.781810 B =10733.192549 C =11019.090696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.044 3.956 4 C 0.144 3.856 5 N -0.570 5.570 6 C -0.246 4.246 7 H 0.057 0.943 8 C 0.022 3.978 9 N -0.891 5.891 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.294 1.294 13 H -0.288 1.288 14 C 0.138 3.862 15 C 0.096 3.904 16 N -0.722 5.722 17 C 0.514 3.486 18 O -0.539 6.539 19 C -0.106 4.106 20 H 0.106 0.894 21 C -0.105 4.105 22 C -0.119 4.119 23 C -0.159 4.159 24 C 0.292 3.708 25 F -0.198 7.198 26 F -0.201 7.201 27 C -0.151 4.151 28 H 0.026 0.974 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.253 0.747 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.396 0.604 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 14.361 -14.818 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.035 4.035 4 C 0.017 3.983 5 N -0.290 5.290 6 C -0.376 4.376 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.534 5.534 10 Si 0.729 3.271 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.214 1.214 14 C 0.010 3.990 15 C -0.030 4.030 16 N -0.373 5.373 17 C 0.299 3.701 18 O -0.416 6.416 19 C -0.128 4.128 20 H 0.124 0.876 21 C -0.142 4.142 22 C -0.157 4.157 23 C -0.197 4.197 24 C 0.256 3.744 25 F -0.179 7.179 26 F -0.182 7.182 27 C -0.190 4.190 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.252 13.754 -14.545 20.972 hybrid contribution 0.052 -0.349 0.170 0.391 sum -6.200 13.405 -14.375 20.610 Atomic orbital electron populations 1.22638 0.84170 1.01528 0.98453 1.88205 1.16616 1.27563 1.94822 1.23496 0.98828 0.84260 0.96921 1.21058 0.87524 0.96613 0.93059 1.43522 1.75555 1.02886 1.07016 1.18857 1.36205 0.81324 1.01180 0.92526 1.25064 0.96003 0.97844 0.98896 1.69994 1.33680 1.35860 1.13866 0.86296 0.77393 0.85447 0.77925 1.20135 1.22086 1.21441 1.21000 0.93256 0.94758 0.89990 1.22469 1.01080 0.94138 0.85299 1.46172 1.15416 1.51995 1.23735 1.20292 0.84907 0.81386 0.83545 1.90711 1.22525 1.51010 1.77383 1.21316 1.01353 0.94099 0.96039 0.87610 1.21436 0.96387 1.01456 0.94953 1.21552 1.02717 0.93175 0.98237 1.22556 0.96433 1.00416 1.00314 1.21016 0.84595 0.77567 0.91258 1.93004 1.59672 1.85043 1.80160 1.93022 1.93255 1.41101 1.90800 1.22504 1.04994 0.94889 0.96569 0.95560 0.95188 0.90698 0.95773 0.95309 0.87981 0.94085 0.93735 0.92955 0.94190 0.92360 0.91510 0.77013 0.90578 0.90062 0.90735 0.90043 0.89411 0.88620 0.88766 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.93 10.18 -35.23 -0.36 -8.29 16 3 C 0.04 0.90 6.28 37.16 0.23 1.13 16 4 C 0.14 3.27 5.76 -4.04 -0.02 3.25 16 5 N -0.57 -13.58 2.41 -173.24 -0.42 -13.99 16 6 C -0.25 -6.64 8.95 -15.06 -0.13 -6.77 16 7 H 0.06 1.57 7.91 -52.49 -0.42 1.15 16 8 C 0.02 0.60 4.95 -17.43 -0.09 0.52 16 9 N -0.89 -25.39 11.53 55.49 0.64 -24.75 16 10 Si 0.90 22.24 29.60 -169.99 -5.03 17.21 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.14 2.66 5.83 -4.04 -0.02 2.63 16 15 C 0.10 1.71 5.97 -4.04 -0.02 1.68 16 16 N -0.72 -9.95 5.45 -60.29 -0.33 -10.28 16 17 C 0.51 7.14 7.15 -10.98 -0.08 7.06 16 18 O -0.54 -9.73 15.98 5.55 0.09 -9.64 16 19 C -0.11 -1.03 2.40 -91.77 -0.22 -1.25 16 20 H 0.11 0.94 7.80 -51.93 -0.41 0.53 16 21 C -0.10 -0.92 4.49 -26.73 -0.12 -1.05 16 22 C -0.12 -0.78 5.80 -26.73 -0.16 -0.94 16 23 C -0.16 -1.05 5.45 -26.73 -0.15 -1.19 16 24 C 0.29 2.51 2.10 -26.75 -0.06 2.46 16 25 F -0.20 -1.97 16.02 2.25 0.04 -1.94 16 26 F -0.20 -2.04 17.06 2.25 0.04 -2.00 16 27 C -0.15 -1.28 4.63 -26.75 -0.12 -1.40 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.56 6.48 -51.93 -0.34 0.23 16 33 H 0.10 2.69 5.58 -51.93 -0.29 2.40 16 34 H 0.04 0.84 7.86 -51.93 -0.41 0.44 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.04 0.69 7.83 -51.93 -0.41 0.29 16 38 H 0.06 1.12 6.48 -51.93 -0.34 0.78 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.40 4.33 7.89 -40.82 -0.32 4.01 16 41 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 43 H 0.07 0.50 7.80 -51.93 -0.41 0.09 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.75 7.56 -51.93 -0.39 0.36 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -32.24 389.41 -7.23 -39.47 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.92 Total: 0.59 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 0.15 Total: 7.75 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.11 Total: -49.02 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.27 Total: -17.93 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.24 -7.23 -39.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677317057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.786 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds