Wall clock time and date at job start Tue Mar 31 2020 18:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00142 * 2 1 4 4 C 1.52999 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47005 * 65.00335 * 4 3 2 6 6 C 1.36939 * 120.00082 * 269.99472 * 5 4 3 7 7 H 1.07997 * 119.99810 * 141.45367 * 6 5 4 8 8 C 1.38814 * 120.00037 * 321.46594 * 6 5 4 9 9 N 1.31619 * 119.99487 * 338.81872 * 8 6 5 10 10 Si 1.86793 * 119.99961 * 158.82402 * 8 6 5 11 11 H 1.48504 * 109.47380 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47534 * 119.99692 * 10 8 6 13 13 H 1.48506 * 109.47049 * 239.99810 * 10 8 6 14 14 C 1.46499 * 120.00236 * 90.00145 * 5 4 3 15 15 C 1.53002 * 109.47237 * 264.70750 * 14 5 4 16 16 N 1.46499 * 109.47352 * 179.97438 * 15 14 5 17 17 C 1.34780 * 119.99988 * 180.02562 * 16 15 14 18 18 O 1.21284 * 119.99977 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99982 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.47165 * 59.99813 * 19 17 16 21 21 C 1.53001 * 109.46819 * 179.97438 * 19 17 16 22 22 C 1.53005 * 109.46966 * 179.97438 * 21 19 17 23 23 C 1.52995 * 109.47125 * 300.00350 * 22 21 19 24 24 C 1.53001 * 109.47484 * 59.99967 * 23 22 21 25 25 F 1.39897 * 109.47283 * 59.99403 * 24 23 22 26 26 F 1.39903 * 109.47307 * 180.02562 * 24 23 22 27 27 C 1.53001 * 109.46950 * 299.99629 * 19 17 16 28 28 H 1.09002 * 109.47062 * 300.00146 * 1 2 3 29 29 H 1.09001 * 109.47510 * 59.99424 * 1 2 3 30 30 H 1.09000 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47078 * 60.00534 * 3 2 1 32 32 H 1.09001 * 109.47259 * 300.00281 * 3 2 1 33 33 H 1.08992 * 109.47198 * 305.00096 * 4 3 2 34 34 H 1.08999 * 109.47085 * 185.00066 * 4 3 2 35 35 H 0.97002 * 119.99196 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47459 * 144.70670 * 14 5 4 37 37 H 1.09003 * 109.46933 * 24.70268 * 14 5 4 38 38 H 1.09003 * 109.46945 * 59.99835 * 15 14 5 39 39 H 1.08996 * 109.47041 * 299.99933 * 15 14 5 40 40 H 0.96996 * 120.00089 * 0.02562 * 16 15 14 41 41 H 1.09003 * 109.47173 * 60.00102 * 21 19 17 42 42 H 1.08996 * 109.47339 * 299.99878 * 21 19 17 43 43 H 1.09003 * 109.46926 * 60.00153 * 22 21 19 44 44 H 1.08995 * 109.47322 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.47151 * 179.97438 * 23 22 21 46 46 H 1.09003 * 109.47058 * 299.99722 * 23 22 21 47 47 H 1.08998 * 109.46759 * 60.00326 * 27 19 17 48 48 H 1.08994 * 109.47150 * 300.00174 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0967 -0.7970 -1.3370 7 1 3.8066 -1.3099 -2.2420 8 6 4.5922 -1.5177 -0.2591 9 7 5.3199 -0.9146 0.6570 10 14 4.2263 -3.3433 -0.1088 11 1 3.3935 -3.7776 -1.2590 12 1 5.5011 -4.1050 -0.1047 13 1 3.4930 -3.5986 1.1571 14 6 4.2863 1.4007 -2.4148 15 6 3.0582 1.4884 -3.3231 16 7 3.3687 2.3251 -4.4849 17 6 2.4302 2.5456 -5.4267 18 8 1.3287 2.0509 -5.3127 19 6 2.7497 3.4059 -6.6220 20 1 3.5795 2.9657 -7.1751 21 6 1.5215 3.4935 -7.5302 22 6 1.8458 4.3675 -8.7435 23 6 2.2330 5.7706 -8.2725 24 6 3.4612 5.6830 -7.3643 25 9 4.5266 5.1187 -8.0739 26 9 3.8149 6.9660 -6.9331 27 6 3.1378 4.8090 -6.1514 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5682 0.8408 34 1 3.9785 2.1765 0.0889 35 1 5.6665 -1.4184 1.4100 36 1 5.1163 0.9608 -2.9675 37 1 4.5623 2.4005 -2.0795 38 1 2.2281 1.9283 -2.7704 39 1 2.7822 0.4886 -3.6584 40 1 4.2497 2.7204 -4.5763 41 1 0.6915 3.9335 -6.9774 42 1 1.2454 2.4938 -7.8655 43 1 2.6759 3.9279 -9.2965 44 1 0.9710 4.4296 -9.3908 45 1 2.4644 6.3931 -9.1368 46 1 1.4029 6.2103 -7.7195 47 1 4.0129 4.7461 -5.5046 48 1 2.3081 5.2492 -5.5984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677317057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:12 Heat of formation + Delta-G solvation = -199.669799 kcal Electronic energy + Delta-G solvation = -30118.824176 eV Core-core repulsion = 25650.741585 eV Total energy + Delta-G solvation = -4468.082591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.96883 -47.96532 -41.13547 -38.97711 -38.12832 -37.35144 -35.71063 -33.45170 -32.54048 -30.94291 -30.89030 -29.04998 -27.16940 -26.02938 -24.88922 -23.78295 -23.14624 -22.20800 -21.61121 -20.79942 -18.88812 -18.58327 -17.92725 -17.57852 -17.35726 -17.25013 -16.92141 -16.61977 -16.43007 -16.29539 -15.84275 -15.58632 -15.31404 -15.15013 -14.94307 -14.88950 -14.42848 -14.30496 -14.26920 -13.83878 -13.67633 -13.56098 -13.42784 -13.26872 -13.02025 -12.75416 -12.74681 -12.45564 -12.40587 -12.36333 -12.27356 -11.94387 -11.84066 -11.75347 -11.71638 -11.54552 -11.46658 -10.81001 -10.46354 -10.37705 -10.03443 -8.54248 -7.79345 -5.39857 1.44625 1.49590 1.56085 1.58180 2.12204 2.56891 2.78142 3.07812 3.18290 3.26950 3.33741 3.36253 3.71815 3.79153 3.88739 3.93311 4.15302 4.20720 4.22490 4.28242 4.36164 4.41283 4.44170 4.50590 4.56430 4.69701 4.71635 4.71731 4.80721 4.81412 4.88927 4.90930 4.93334 4.95073 5.10466 5.12269 5.18051 5.23921 5.36442 5.49628 5.71051 5.78342 6.45849 6.55708 6.64148 7.21619 7.24672 7.88824 8.38410 9.18370 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.002608 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.781810 B =10733.192549 C =11019.090696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.052 3.948 4 C 0.142 3.858 5 N -0.587 5.587 6 C -0.244 4.244 7 H 0.042 0.958 8 C -0.021 4.021 9 N -0.915 5.915 10 Si 0.946 3.054 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.293 1.293 14 C 0.142 3.858 15 C 0.119 3.881 16 N -0.713 5.713 17 C 0.514 3.486 18 O -0.582 6.582 19 C -0.094 4.094 20 H 0.118 0.882 21 C -0.104 4.104 22 C -0.111 4.111 23 C -0.157 4.157 24 C 0.289 3.711 25 F -0.206 7.206 26 F -0.210 7.210 27 C -0.149 4.149 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.250 0.750 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.031 0.969 40 H 0.413 0.587 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 16.001 -16.081 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.027 4.027 4 C 0.016 3.984 5 N -0.307 5.307 6 C -0.375 4.375 7 H 0.059 0.941 8 C -0.218 4.218 9 N -0.559 5.559 10 Si 0.776 3.224 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.220 1.220 14 C 0.015 3.985 15 C -0.007 4.007 16 N -0.365 5.365 17 C 0.301 3.699 18 O -0.462 6.462 19 C -0.116 4.116 20 H 0.136 0.864 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.194 4.194 24 C 0.253 3.747 25 F -0.187 7.187 26 F -0.191 7.191 27 C -0.188 4.188 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.250 0.750 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.119 0.881 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.738 15.427 -15.837 23.113 hybrid contribution 0.166 -0.817 0.529 0.987 sum -6.571 14.610 -15.309 22.158 Atomic orbital electron populations 1.22803 0.81747 1.02613 0.99844 1.88128 1.19427 1.28820 1.95159 1.23345 0.97059 0.83972 0.98325 1.21007 0.89393 0.96602 0.91387 1.43675 1.76085 1.02426 1.08502 1.18881 1.34957 0.83158 1.00499 0.94075 1.25557 0.96558 1.00581 0.99103 1.70081 1.34880 1.36685 1.14283 0.85557 0.77098 0.82413 0.77327 1.20169 1.21687 1.21965 1.21039 0.93481 0.95258 0.88733 1.21872 0.99845 0.92895 0.86136 1.45988 1.16467 1.51341 1.22695 1.21021 0.83951 0.80896 0.84062 1.90694 1.24382 1.52756 1.78381 1.21262 1.02252 0.94015 0.94041 0.86372 1.21439 0.95726 1.01356 0.95683 1.21506 1.03562 0.92577 0.97196 1.22594 0.95718 1.00604 1.00526 1.21209 0.85000 0.76999 0.91489 1.92990 1.60266 1.85144 1.80317 1.93006 1.93397 1.41700 1.90967 1.22493 1.05496 0.93913 0.96866 0.93213 0.94576 0.89915 0.93349 0.94604 0.91577 0.92113 0.94110 0.93377 0.91512 0.93485 0.95029 0.75032 0.91171 0.91301 0.90599 0.88246 0.88181 0.87468 0.88140 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.40 -17.60 10.18 -148.98 -1.52 -19.12 16 3 C 0.05 2.05 6.28 71.98 0.45 2.50 16 4 C 0.14 6.42 5.76 86.38 0.50 6.92 16 5 N -0.59 -27.97 2.41 -702.02 -1.69 -29.66 16 6 C -0.24 -13.37 8.95 84.03 0.75 -12.62 16 7 H 0.04 2.34 7.91 -2.91 -0.02 2.32 16 8 C -0.02 -1.16 4.95 84.86 0.42 -0.74 16 9 N -0.91 -52.88 11.53 21.65 0.25 -52.63 16 10 Si 0.95 46.38 29.60 68.60 2.03 48.41 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 13 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 14 C 0.14 5.36 5.83 86.38 0.50 5.86 16 15 C 0.12 4.23 5.97 86.38 0.52 4.75 16 16 N -0.71 -18.86 5.45 -463.05 -2.52 -21.39 16 17 C 0.51 13.82 7.15 87.66 0.63 14.45 16 18 O -0.58 -21.02 15.98 -3.04 -0.05 -21.07 16 19 C -0.09 -1.67 2.40 -11.54 -0.03 -1.69 16 20 H 0.12 1.85 7.80 -2.39 -0.02 1.83 16 21 C -0.10 -1.68 4.49 30.60 0.14 -1.54 16 22 C -0.11 -1.17 5.80 30.59 0.18 -0.99 16 23 C -0.16 -1.62 5.45 30.59 0.17 -1.45 16 24 C 0.29 4.29 2.10 30.58 0.06 4.35 16 25 F -0.21 -3.64 16.02 44.97 0.72 -2.92 16 26 F -0.21 -3.81 17.06 44.97 0.77 -3.04 16 27 C -0.15 -2.20 4.63 30.58 0.14 -2.06 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.36 6.48 -2.39 -0.02 1.34 16 33 H 0.07 3.53 5.58 -2.39 -0.01 3.52 16 34 H 0.06 2.43 7.86 -2.39 -0.02 2.41 16 35 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.05 1.85 8.08 -2.39 -0.02 1.84 16 37 H 0.07 2.18 7.83 -2.39 -0.02 2.16 16 38 H 0.05 1.79 6.48 -2.39 -0.02 1.77 16 39 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.41 8.23 7.89 -92.71 -0.73 7.50 16 41 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 43 H 0.08 0.81 7.80 -2.39 -0.02 0.79 16 44 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.10 1.35 7.56 -2.39 -0.02 1.33 16 48 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -70.64 389.41 3.89 -66.74 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.23 Total: 14.81 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 5.68 Total: 19.87 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.96 Total: -103.68 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.56 Total: -40.19 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 1.49 Total: -5.96 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -70.64 3.89 -66.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677317057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.928 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds