Wall clock time and date at job start Tue Mar 31 2020 18:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47258 * 2 1 4 4 C 1.52999 * 109.47353 * 120.00015 * 2 1 3 5 5 C 1.50705 * 109.47207 * 294.99904 * 4 2 1 6 6 C 1.38242 * 119.97453 * 269.72749 * 5 4 2 7 7 C 1.38203 * 120.02453 * 179.72733 * 6 5 4 8 8 C 1.38464 * 119.97034 * 0.51700 * 7 6 5 9 9 F 1.35104 * 120.02195 * 179.72840 * 8 7 6 10 10 C 1.38459 * 119.95237 * 359.75399 * 8 7 6 11 11 C 1.38201 * 119.97045 * 359.97438 * 10 8 7 12 12 C 1.50698 * 109.47222 * 240.00039 * 2 1 3 13 13 O 1.21284 * 120.00133 * 240.00378 * 12 2 1 14 14 N 1.34775 * 120.00051 * 59.99868 * 12 2 1 15 15 C 1.46499 * 120.00179 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.47104 * 179.97438 * 15 14 12 17 17 H 1.08996 * 112.85250 * 316.19864 * 16 15 14 18 18 C 1.53780 * 113.68743 * 87.47017 * 16 15 14 19 19 C 1.53786 * 87.08292 * 139.98865 * 18 16 15 20 20 H 1.08993 * 113.69429 * 220.00745 * 19 18 16 21 21 N 1.46506 * 113.61017 * 89.11397 * 19 18 16 22 22 C 1.36938 * 119.99589 * 107.50764 * 21 19 18 23 23 H 1.07999 * 120.00325 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99408 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00325 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99550 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47397 * 90.00455 * 26 24 22 28 28 H 1.48510 * 109.46813 * 210.00284 * 26 24 22 29 29 H 1.48495 * 109.47179 * 329.99902 * 26 24 22 30 30 C 1.53780 * 87.07926 * 334.56872 * 19 18 16 31 31 H 1.08998 * 109.47258 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47124 * 300.00144 * 1 2 3 33 33 H 1.08999 * 109.46712 * 59.99589 * 1 2 3 34 34 H 1.09004 * 109.47259 * 54.99853 * 4 2 1 35 35 H 1.09000 * 109.47922 * 174.99937 * 4 2 1 36 36 H 1.07998 * 119.98885 * 359.97199 * 6 5 4 37 37 H 1.07995 * 120.01313 * 180.25219 * 7 6 5 38 38 H 1.07994 * 120.01379 * 179.97438 * 10 8 7 39 39 H 1.08005 * 119.98177 * 179.97438 * 11 10 8 40 40 H 0.97003 * 119.99958 * 0.02562 * 14 12 2 41 41 H 1.09005 * 109.47068 * 60.00504 * 15 14 12 42 42 H 1.08994 * 109.47747 * 300.00904 * 15 14 12 43 43 H 1.09002 * 113.61686 * 25.44566 * 18 16 15 44 44 H 1.08998 * 113.61586 * 254.53749 * 18 16 15 45 45 H 0.96995 * 120.00050 * 287.22972 * 21 19 18 46 46 H 0.97000 * 119.99693 * 180.02562 * 25 24 22 47 47 H 1.09001 * 113.61558 * 139.98316 * 30 19 18 48 48 H 1.08997 * 113.61463 * 270.88050 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 6 2.4845 1.0291 2.9821 7 6 2.1175 1.7473 4.1043 8 6 0.9095 1.4856 4.7286 9 9 0.5522 2.1834 5.8289 10 6 0.0685 0.5080 4.2247 11 6 0.4352 -0.2051 3.0990 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4545 15 6 2.1955 -0.9402 -3.6507 16 6 1.6849 -0.2194 -4.8999 17 1 0.6342 0.0612 -4.8269 18 6 2.5974 0.9263 -5.3686 19 6 2.3171 0.4566 -6.8059 20 1 3.1915 0.4892 -7.4557 21 7 1.1371 1.0822 -7.4080 22 6 1.2879 2.0257 -8.3889 23 1 2.2767 2.3090 -8.7184 24 6 0.1699 2.6181 -8.9598 25 7 -1.0351 2.2733 -8.5580 26 14 0.3756 3.9057 -10.2974 27 1 0.3943 3.2415 -11.6254 28 1 -0.7568 4.8648 -10.2396 29 1 1.6526 4.6347 -10.0906 30 6 2.0414 -0.9355 -6.2133 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6054 -1.7198 1.2952 35 1 3.1264 -0.7995 1.2056 36 1 3.4285 1.2299 2.4976 37 1 2.7744 2.5094 4.4967 38 1 -0.8737 0.3028 4.7110 39 1 -0.2206 -0.9680 2.7060 40 1 1.1493 0.5389 -2.5435 41 1 1.8326 -1.9680 -3.6509 42 1 3.2855 -0.9399 -3.6506 43 1 3.6378 0.8077 -5.0656 44 1 2.2017 1.9177 -5.1482 45 1 0.2490 0.8252 -7.1147 46 1 -1.8163 2.6871 -8.9572 47 1 1.1969 -1.4471 -6.6749 48 1 2.9297 -1.5630 -6.1413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688951276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:11 Heat of formation + Delta-G solvation = -45.240139 kcal Electronic energy + Delta-G solvation = -27301.353427 eV Core-core repulsion = 23270.736634 eV Total energy + Delta-G solvation = -4030.616793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.23201 -40.34955 -39.41037 -38.53256 -35.14822 -34.69523 -33.22956 -31.57882 -31.04849 -30.09261 -27.41311 -26.92924 -25.09132 -24.16821 -23.53583 -23.25583 -21.84379 -21.39064 -19.98815 -18.41785 -18.03147 -17.48671 -17.13037 -16.74533 -16.17788 -15.91997 -15.67459 -15.59732 -15.00468 -14.55559 -14.51280 -14.14356 -14.04950 -13.91502 -13.77145 -13.65528 -13.34590 -12.92871 -12.86540 -12.49632 -12.46085 -12.24952 -11.95010 -11.78798 -11.56259 -11.45962 -11.38015 -11.21905 -11.06506 -10.87613 -10.51510 -10.20305 -10.11229 -9.76885 -9.72410 -9.51500 -9.46318 -9.01537 -8.92396 -8.89814 -7.03588 -5.84179 -3.13210 0.72458 0.82068 2.58347 3.05618 3.26639 3.39459 3.44970 3.46352 3.88685 4.29612 4.31049 4.49554 4.52751 4.53111 4.63572 4.77859 4.86415 4.93653 5.00616 5.03418 5.13568 5.22418 5.35810 5.42053 5.44617 5.45398 5.55129 5.59549 5.64940 5.68403 5.72460 5.80895 5.83525 5.85279 5.88052 5.93616 6.08158 6.17190 6.18218 6.34078 6.40331 6.49345 6.56298 6.71103 6.86942 7.00968 7.48573 7.65871 8.17683 8.35027 9.45786 10.03171 10.37379 11.38210 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.001798 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.295412 B =15572.577481 C =16579.062433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.061 4.061 5 C -0.087 4.087 6 C -0.087 4.087 7 C -0.151 4.151 8 C 0.091 3.909 9 F -0.142 7.142 10 C -0.152 4.152 11 C -0.086 4.086 12 C 0.515 3.485 13 O -0.547 6.547 14 N -0.722 5.722 15 C 0.130 3.870 16 C -0.119 4.119 17 H 0.092 0.908 18 C -0.168 4.168 19 C 0.167 3.833 20 H 0.062 0.938 21 N -0.706 5.706 22 C -0.242 4.242 23 H 0.072 0.928 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.148 4.148 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.402 0.598 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.068 0.932 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -4.991 25.497 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 H 0.117 0.883 4 C -0.099 4.099 5 C -0.088 4.088 6 C -0.105 4.105 7 C -0.170 4.170 8 C 0.072 3.928 9 F -0.121 7.121 10 C -0.171 4.171 11 C -0.104 4.104 12 C 0.300 3.700 13 O -0.425 6.425 14 N -0.373 5.373 15 C 0.007 3.993 16 C -0.138 4.138 17 H 0.111 0.889 18 C -0.209 4.209 19 C 0.054 3.946 20 H 0.080 0.920 21 N -0.344 5.344 22 C -0.374 4.374 23 H 0.090 0.910 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.188 4.188 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.237 0.763 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.802 -5.536 25.435 26.470 hybrid contribution -0.662 1.244 -0.394 1.464 sum 4.140 -4.291 25.041 25.741 Atomic orbital electron populations 1.21887 0.92704 1.02912 1.03156 1.21280 0.97907 1.00952 0.92586 0.88317 1.20410 1.02436 0.98074 0.88987 1.19980 0.94523 0.97091 0.97170 1.20978 0.99778 0.94693 0.95053 1.21164 0.96059 1.02195 0.97587 1.17755 0.95270 0.94019 0.85797 1.91503 1.91982 1.77629 1.50982 1.21165 1.00563 0.97044 0.98331 1.20989 0.96065 0.99053 0.94263 1.20561 0.80092 0.84573 0.84726 1.90692 1.38281 1.26534 1.86960 1.46097 1.53392 1.32101 1.05723 1.21478 0.98892 0.95899 0.83011 1.22704 1.00427 0.98123 0.92545 0.88934 1.23882 0.97649 0.97926 1.01435 1.21061 0.91610 0.90511 0.91375 0.91980 1.42166 1.02666 1.46106 1.43472 1.19293 0.92789 1.13644 1.11633 0.90987 1.24767 0.95222 1.00564 1.00350 1.69658 0.96877 1.46145 1.45375 0.86168 0.76931 0.81128 0.81822 1.21656 1.21753 1.20704 1.23446 1.01298 0.98626 0.95416 0.91904 0.91108 0.91733 0.89956 0.89760 0.84877 0.84759 0.84760 0.84845 0.76313 0.91887 0.91629 0.91438 0.91529 0.78125 0.93435 0.91343 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.66 37.16 0.32 -0.73 16 2 C -0.11 -0.87 2.71 -91.77 -0.25 -1.11 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.06 -0.49 4.19 -27.88 -0.12 -0.60 16 5 C -0.09 -0.63 4.71 -104.62 -0.49 -1.12 16 6 C -0.09 -0.61 9.70 -39.59 -0.38 -0.99 16 7 C -0.15 -1.11 10.03 -39.51 -0.40 -1.51 16 8 C 0.09 0.76 7.30 -39.42 -0.29 0.47 16 9 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 10 C -0.15 -1.10 10.03 -39.51 -0.40 -1.49 16 11 C -0.09 -0.58 7.96 -39.59 -0.32 -0.89 16 12 C 0.51 5.96 7.15 -10.99 -0.08 5.88 16 13 O -0.55 -8.29 15.92 5.55 0.09 -8.20 16 14 N -0.72 -8.10 5.45 -60.30 -0.33 -8.43 16 15 C 0.13 1.66 5.51 -4.04 -0.02 1.64 16 16 C -0.12 -1.70 3.63 -89.81 -0.33 -2.03 16 17 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.17 -2.69 7.43 -25.92 -0.19 -2.88 16 19 C 0.17 3.17 4.56 -67.11 -0.31 2.86 16 20 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 21 N -0.71 -17.00 5.31 -52.63 -0.28 -17.28 16 22 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 26 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 30 C -0.15 -2.30 7.39 -25.92 -0.19 -2.49 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.45 6.26 -51.93 -0.33 0.12 16 33 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 34 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.08 0.73 7.90 -51.93 -0.41 0.32 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.69 8.04 -52.48 -0.42 0.27 16 40 H 0.40 3.91 7.89 -40.82 -0.32 3.59 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.87 7.85 -51.93 -0.41 0.47 16 43 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.38 9.80 7.90 -40.82 -0.32 9.48 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -31.41 399.06 -10.07 -41.48 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.62 Total: 9.71 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -3.68 Total: -12.18 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.12 Total: -52.41 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.41 -10.07 -41.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688951276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.757 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds