Wall clock time and date at job start Tue Mar 31 2020 18:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47258 * 2 1 4 4 C 1.52999 * 109.47353 * 120.00015 * 2 1 3 5 5 C 1.50705 * 109.47207 * 294.99904 * 4 2 1 6 6 C 1.38242 * 119.97453 * 269.72749 * 5 4 2 7 7 C 1.38203 * 120.02453 * 179.72733 * 6 5 4 8 8 C 1.38464 * 119.97034 * 0.51700 * 7 6 5 9 9 F 1.35104 * 120.02195 * 179.72840 * 8 7 6 10 10 C 1.38459 * 119.95237 * 359.75399 * 8 7 6 11 11 C 1.38201 * 119.97045 * 359.97438 * 10 8 7 12 12 C 1.50698 * 109.47222 * 240.00039 * 2 1 3 13 13 O 1.21284 * 120.00133 * 240.00378 * 12 2 1 14 14 N 1.34775 * 120.00051 * 59.99868 * 12 2 1 15 15 C 1.46499 * 120.00179 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.47104 * 179.97438 * 15 14 12 17 17 H 1.08996 * 112.85250 * 316.19864 * 16 15 14 18 18 C 1.53780 * 113.68743 * 87.47017 * 16 15 14 19 19 C 1.53786 * 87.08292 * 139.98865 * 18 16 15 20 20 H 1.08993 * 113.69429 * 220.00745 * 19 18 16 21 21 N 1.46506 * 113.61017 * 89.11397 * 19 18 16 22 22 C 1.36938 * 119.99589 * 107.50764 * 21 19 18 23 23 H 1.07999 * 120.00325 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99408 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00325 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99550 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47397 * 90.00455 * 26 24 22 28 28 H 1.48510 * 109.46813 * 210.00284 * 26 24 22 29 29 H 1.48495 * 109.47179 * 329.99902 * 26 24 22 30 30 C 1.53780 * 87.07926 * 334.56872 * 19 18 16 31 31 H 1.08998 * 109.47258 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47124 * 300.00144 * 1 2 3 33 33 H 1.08999 * 109.46712 * 59.99589 * 1 2 3 34 34 H 1.09004 * 109.47259 * 54.99853 * 4 2 1 35 35 H 1.09000 * 109.47922 * 174.99937 * 4 2 1 36 36 H 1.07998 * 119.98885 * 359.97199 * 6 5 4 37 37 H 1.07995 * 120.01313 * 180.25219 * 7 6 5 38 38 H 1.07994 * 120.01379 * 179.97438 * 10 8 7 39 39 H 1.08005 * 119.98177 * 179.97438 * 11 10 8 40 40 H 0.97003 * 119.99958 * 0.02562 * 14 12 2 41 41 H 1.09005 * 109.47068 * 60.00504 * 15 14 12 42 42 H 1.08994 * 109.47747 * 300.00904 * 15 14 12 43 43 H 1.09002 * 113.61686 * 25.44566 * 18 16 15 44 44 H 1.08998 * 113.61586 * 254.53749 * 18 16 15 45 45 H 0.96995 * 120.00050 * 287.22972 * 21 19 18 46 46 H 0.97000 * 119.99693 * 180.02562 * 25 24 22 47 47 H 1.09001 * 113.61558 * 139.98316 * 30 19 18 48 48 H 1.08997 * 113.61463 * 270.88050 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 6 2.4845 1.0291 2.9821 7 6 2.1175 1.7473 4.1043 8 6 0.9095 1.4856 4.7286 9 9 0.5522 2.1834 5.8289 10 6 0.0685 0.5080 4.2247 11 6 0.4352 -0.2051 3.0990 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4545 15 6 2.1955 -0.9402 -3.6507 16 6 1.6849 -0.2194 -4.8999 17 1 0.6342 0.0612 -4.8269 18 6 2.5974 0.9263 -5.3686 19 6 2.3171 0.4566 -6.8059 20 1 3.1915 0.4892 -7.4557 21 7 1.1371 1.0822 -7.4080 22 6 1.2879 2.0257 -8.3889 23 1 2.2767 2.3090 -8.7184 24 6 0.1699 2.6181 -8.9598 25 7 -1.0351 2.2733 -8.5580 26 14 0.3756 3.9057 -10.2974 27 1 0.3943 3.2415 -11.6254 28 1 -0.7568 4.8648 -10.2396 29 1 1.6526 4.6347 -10.0906 30 6 2.0414 -0.9355 -6.2133 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6054 -1.7198 1.2952 35 1 3.1264 -0.7995 1.2056 36 1 3.4285 1.2299 2.4976 37 1 2.7744 2.5094 4.4967 38 1 -0.8737 0.3028 4.7110 39 1 -0.2206 -0.9680 2.7060 40 1 1.1493 0.5389 -2.5435 41 1 1.8326 -1.9680 -3.6509 42 1 3.2855 -0.9399 -3.6506 43 1 3.6378 0.8077 -5.0656 44 1 2.2017 1.9177 -5.1482 45 1 0.2490 0.8252 -7.1147 46 1 -1.8163 2.6871 -8.9572 47 1 1.1969 -1.4471 -6.6749 48 1 2.9297 -1.5630 -6.1413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688951276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:10 Heat of formation + Delta-G solvation = -62.614794 kcal Electronic energy + Delta-G solvation = -27302.106848 eV Core-core repulsion = 23270.736634 eV Total energy + Delta-G solvation = -4031.370215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.87786 -41.20080 -40.23273 -39.71109 -36.03795 -35.78676 -34.92224 -32.18628 -32.08241 -31.45503 -28.64588 -27.52109 -26.42236 -25.78214 -24.55502 -23.88678 -23.01175 -22.14185 -20.87354 -19.75620 -19.31457 -18.61390 -18.11409 -17.35808 -17.17167 -16.69200 -16.57023 -16.51481 -16.28886 -15.84953 -15.65872 -15.19292 -15.04018 -14.74583 -14.63365 -14.52849 -14.36597 -14.28344 -13.78967 -13.62050 -13.26523 -13.08528 -13.01009 -12.91706 -12.89810 -12.62872 -12.40527 -12.15184 -12.14980 -12.06510 -12.00120 -11.79572 -11.51792 -11.46249 -10.98265 -10.86312 -10.62690 -10.02510 -10.00901 -9.49608 -8.99018 -7.95013 -5.22949 0.15225 0.30181 1.48641 1.49526 1.57938 1.67895 2.24060 2.56150 2.64355 3.32656 3.37692 3.59835 3.73632 3.77337 3.81490 3.88923 3.90204 3.99515 4.03200 4.15286 4.20185 4.34196 4.36355 4.39028 4.43032 4.48318 4.74709 4.78675 4.81385 4.88308 4.91047 4.94271 5.01080 5.03180 5.09002 5.13253 5.19686 5.21623 5.28887 5.31761 5.32563 5.37740 5.51145 5.58354 5.62172 5.68039 5.95430 6.28822 6.59138 7.27465 7.33960 8.11339 8.33584 9.28139 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.001798 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.295412 B =15572.577481 C =16579.062433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.113 0.887 4 C -0.055 4.055 5 C -0.089 4.089 6 C -0.090 4.090 7 C -0.156 4.156 8 C 0.070 3.930 9 F -0.153 7.153 10 C -0.155 4.155 11 C -0.086 4.086 12 C 0.514 3.486 13 O -0.584 6.584 14 N -0.719 5.719 15 C 0.140 3.860 16 C -0.101 4.101 17 H 0.081 0.919 18 C -0.152 4.152 19 C 0.142 3.858 20 H 0.059 0.941 21 N -0.719 5.719 22 C -0.242 4.242 23 H 0.076 0.924 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.972 3.028 27 H -0.289 1.289 28 H -0.296 1.296 29 H -0.270 1.270 30 C -0.135 4.135 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.411 0.589 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.374 0.626 46 H 0.251 0.749 47 H 0.057 0.943 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.139 -4.936 26.240 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.131 0.869 4 C -0.093 4.093 5 C -0.089 4.089 6 C -0.108 4.108 7 C -0.175 4.175 8 C 0.051 3.949 9 F -0.132 7.132 10 C -0.174 4.174 11 C -0.104 4.104 12 C 0.302 3.698 13 O -0.464 6.464 14 N -0.370 5.370 15 C 0.016 3.984 16 C -0.120 4.120 17 H 0.100 0.900 18 C -0.192 4.192 19 C 0.032 3.968 20 H 0.077 0.923 21 N -0.357 5.357 22 C -0.374 4.374 23 H 0.094 0.906 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.801 3.199 27 H -0.216 1.216 28 H -0.223 1.223 29 H -0.195 1.195 30 C -0.175 4.175 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.247 0.753 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.207 0.793 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.703 -5.480 26.197 27.365 hybrid contribution -0.848 1.167 -0.604 1.564 sum 4.856 -4.313 25.593 26.404 Atomic orbital electron populations 1.21885 0.91668 1.03041 1.03802 1.21270 0.98591 1.01135 0.90881 0.86876 1.20315 1.01862 0.97931 0.89176 1.19966 0.94848 0.97127 0.96970 1.21162 1.00302 0.94424 0.94920 1.21342 0.95975 1.02505 0.97629 1.18044 0.96133 0.94744 0.85994 1.91473 1.92141 1.77976 1.51587 1.21355 1.00968 0.96647 0.98428 1.21169 0.96111 0.99138 0.93957 1.21111 0.79229 0.84051 0.85426 1.90678 1.40017 1.28269 1.87463 1.46061 1.53282 1.32222 1.05392 1.21268 0.98782 0.95598 0.82746 1.22476 0.99487 0.97038 0.92960 0.90048 1.23695 0.99268 0.97483 0.98800 1.21403 0.89911 0.92898 0.92596 0.92328 1.42289 1.03694 1.46212 1.43542 1.19667 0.92830 1.13382 1.11479 0.90604 1.25537 0.95110 1.03111 1.03007 1.69804 0.97388 1.47709 1.46972 0.85163 0.76940 0.78688 0.79106 1.21574 1.22288 1.19472 1.23351 1.02061 0.96898 0.95168 0.92063 0.90046 0.91514 0.90439 0.90563 0.83512 0.83637 0.83492 0.83302 0.75331 0.92057 0.91555 0.89099 0.93304 0.79337 0.94042 0.92463 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.66 71.98 0.62 -1.15 16 2 C -0.10 -1.41 2.71 -11.54 -0.03 -1.44 16 3 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 4 C -0.06 -0.79 4.19 29.85 0.12 -0.66 16 5 C -0.09 -1.13 4.71 -19.86 -0.09 -1.22 16 6 C -0.09 -1.11 9.70 22.26 0.22 -0.89 16 7 C -0.16 -2.10 10.03 22.32 0.22 -1.88 16 8 C 0.07 1.10 7.30 22.38 0.16 1.26 16 9 F -0.15 -2.81 17.27 44.97 0.78 -2.04 16 10 C -0.16 -2.02 10.03 22.31 0.22 -1.80 16 11 C -0.09 -1.00 7.96 22.26 0.18 -0.82 16 12 C 0.51 11.07 7.15 87.66 0.63 11.70 16 13 O -0.58 -17.02 15.92 -3.04 -0.05 -17.07 16 14 N -0.72 -14.80 5.45 -463.07 -2.52 -17.33 16 15 C 0.14 3.28 5.51 86.38 0.48 3.76 16 16 C -0.10 -2.72 3.63 -10.27 -0.04 -2.76 16 17 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 18 C -0.15 -4.62 7.43 31.12 0.23 -4.39 16 19 C 0.14 5.26 4.56 45.52 0.21 5.47 16 20 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 21 N -0.72 -34.82 5.31 -320.43 -1.70 -36.53 16 22 C -0.24 -13.08 9.97 84.03 0.84 -12.25 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 25 N -0.97 -57.85 13.06 21.65 0.28 -57.57 16 26 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 C -0.14 -4.00 7.39 31.12 0.23 -3.77 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.84 6.26 -2.39 -0.01 0.82 16 33 H 0.07 0.79 7.56 -2.39 -0.02 0.77 16 34 H 0.08 1.19 8.09 -2.38 -0.02 1.17 16 35 H 0.08 1.23 7.90 -2.39 -0.02 1.21 16 36 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.15 1.22 8.04 -2.91 -0.02 1.20 16 40 H 0.41 7.21 7.89 -92.71 -0.73 6.48 16 41 H 0.06 1.50 8.14 -2.38 -0.02 1.49 16 42 H 0.07 1.59 7.85 -2.39 -0.02 1.58 16 43 H 0.09 2.37 7.90 -2.39 -0.02 2.35 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.37 19.41 7.90 -92.71 -0.73 18.67 16 46 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.10 2.53 8.10 -2.39 -0.02 2.51 16 Total: -1.00 -67.45 399.06 2.99 -64.47 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.49 Total: 33.39 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.67 Total: -14.60 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -3.94 Total: -111.42 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.05 Total: -17.07 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.45 2.99 -64.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688951276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.851 kcal (2) G-P(sol) polarization free energy of solvation -67.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds