Wall clock time and date at job start Tue Mar 31 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50699 * 109.47157 * 119.99955 * 2 1 3 5 5 O 1.21278 * 120.00070 * 28.53030 * 4 2 1 6 6 N 1.34780 * 120.00014 * 208.52931 * 4 2 1 7 7 C 1.46931 * 120.62834 * 5.57992 * 6 4 2 8 8 C 1.53200 * 108.76913 * 233.58084 * 7 6 4 9 9 C 1.53041 * 109.31365 * 305.36179 * 8 7 6 10 10 C 1.53043 * 109.53426 * 61.36572 * 9 8 7 11 11 H 1.09008 * 109.49847 * 58.58954 * 10 9 8 12 12 N 1.46505 * 109.49555 * 178.64847 * 10 9 8 13 13 C 1.36935 * 119.99426 * 57.26159 * 12 10 9 14 14 H 1.07999 * 120.00710 * 324.35900 * 13 12 10 15 15 C 1.38824 * 119.99579 * 144.36518 * 13 12 10 16 16 N 1.31615 * 119.99853 * 158.27280 * 15 13 12 17 17 Si 1.86799 * 119.99907 * 338.27306 * 15 13 12 18 18 H 1.48497 * 109.46844 * 95.19031 * 17 15 13 19 19 H 1.48500 * 109.46807 * 215.18861 * 17 15 13 20 20 H 1.48500 * 109.47313 * 335.19241 * 17 15 13 21 21 C 1.46496 * 120.00237 * 237.26477 * 12 10 9 22 22 C 1.52996 * 109.47454 * 89.99786 * 21 12 10 23 23 O 1.42896 * 109.46984 * 65.00061 * 22 21 12 24 24 C 1.46926 * 120.63116 * 185.28924 * 6 4 2 25 25 C 1.53002 * 109.47057 * 240.00280 * 2 1 3 26 26 C 1.52994 * 109.47395 * 64.99795 * 25 2 1 27 27 F 1.39905 * 109.46810 * 185.00211 * 25 2 1 28 28 F 1.39903 * 109.46703 * 304.99574 * 25 2 1 29 29 H 1.09000 * 109.47369 * 294.22353 * 1 2 3 30 30 H 1.08998 * 109.47168 * 54.21815 * 1 2 3 31 31 H 1.08994 * 109.47246 * 174.22191 * 1 2 3 32 32 H 1.08994 * 109.58523 * 353.36108 * 7 6 4 33 33 H 1.08997 * 109.59030 * 113.79672 * 7 6 4 34 34 H 1.09006 * 109.49904 * 65.31543 * 8 7 6 35 35 H 1.09001 * 109.49372 * 185.37879 * 8 7 6 36 36 H 1.08999 * 109.46049 * 181.38743 * 9 8 7 37 37 H 1.09002 * 109.46178 * 301.36195 * 9 8 7 38 38 H 0.97001 * 120.00347 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.47006 * 210.00043 * 21 12 10 40 40 H 1.09007 * 109.46771 * 329.99290 * 21 12 10 41 41 H 1.08997 * 109.47079 * 185.00212 * 22 21 12 42 42 H 1.08997 * 109.46858 * 305.00351 * 22 21 12 43 43 H 0.96695 * 114.00255 * 179.97438 * 23 22 21 44 44 H 1.08999 * 109.59010 * 246.20715 * 24 6 4 45 45 H 1.08999 * 109.58145 * 6.63211 * 24 6 4 46 46 H 1.09003 * 109.47094 * 59.99778 * 26 25 2 47 47 H 1.09000 * 109.47296 * 179.97438 * 26 25 2 48 48 H 1.08998 * 109.46956 * 300.00155 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3645 -1.5845 1.7411 6 7 3.2238 -0.3744 1.7634 7 6 3.9881 0.7621 1.2312 8 6 5.4013 0.2852 0.8815 9 6 6.0310 -0.3757 2.1099 10 6 5.1981 -1.5925 2.5197 11 1 5.1492 -2.2965 1.6888 12 7 5.8194 -2.2433 3.6759 13 6 6.0381 -1.5327 4.8258 14 1 6.3148 -0.4901 4.7720 15 6 5.9044 -2.1525 6.0607 16 7 6.5028 -1.6476 7.1187 17 14 4.8753 -3.7032 6.2209 18 1 5.7561 -4.8944 6.1199 19 1 4.1869 -3.7067 7.5367 20 1 3.8647 -3.7412 5.1334 21 6 6.2067 -3.6542 3.6018 22 6 7.6449 -3.7622 3.0912 23 8 8.5339 -3.1758 4.0440 24 6 3.7801 -1.1336 2.8916 25 6 2.0399 -0.7212 -1.2493 26 6 1.6352 0.0689 -2.4953 27 9 3.4343 -0.8216 -1.1932 28 9 1.4821 -2.0029 -1.3081 29 1 -0.3634 0.4216 0.9372 30 1 -0.3633 0.6009 -0.8337 31 1 -0.3633 -1.0224 -0.1035 32 1 3.4990 1.1437 0.3350 33 1 4.0437 1.5493 1.9831 34 1 5.3504 -0.4364 0.0660 35 1 6.0076 1.1378 0.5756 36 1 7.0457 -0.6939 1.8709 37 1 6.0587 0.3388 2.9326 38 1 6.4091 -2.0804 7.9817 39 1 6.1384 -4.1023 4.5931 40 1 5.5384 -4.1791 2.9191 41 1 7.9030 -4.8120 2.9516 42 1 7.7333 -3.2367 2.1404 43 1 9.4651 -3.2090 3.7856 44 1 3.8190 -0.4978 3.7761 45 1 3.1536 -2.0029 3.0912 46 1 2.0698 1.0675 -2.4494 47 1 1.9989 -0.4446 -3.3853 48 1 0.5489 0.1471 -2.5389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689207722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:50 Heat of formation + Delta-G solvation = -151.796994 kcal Electronic energy + Delta-G solvation = -32112.106986 eV Core-core repulsion = 27646.100316 eV Total energy + Delta-G solvation = -4466.006670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.13039 -47.10032 -40.05717 -37.76097 -36.31632 -34.89663 -34.57871 -32.17386 -31.42099 -30.34871 -29.75944 -27.53863 -26.12222 -24.63882 -23.95063 -22.57045 -21.91424 -20.93735 -19.67394 -18.88191 -17.87573 -17.33337 -16.87026 -16.67739 -16.40674 -16.27197 -15.49472 -15.17996 -14.78365 -14.36678 -14.17837 -13.88749 -13.78622 -13.62033 -13.55958 -13.33898 -13.13564 -13.04276 -12.96975 -12.77957 -12.61369 -12.46863 -12.33875 -12.21094 -12.14615 -11.78080 -11.71015 -11.39200 -11.07906 -11.01085 -10.72199 -10.56262 -10.42532 -10.31560 -9.98707 -9.60048 -9.59217 -9.49214 -9.08914 -8.36665 -8.31164 -6.79148 -5.83912 -3.23880 2.55212 3.10471 3.40848 3.55953 3.56558 3.60999 3.83311 4.07232 4.14369 4.58832 4.64563 4.67024 4.74292 4.87401 5.09093 5.13197 5.20052 5.22577 5.31232 5.34347 5.38389 5.45992 5.51022 5.59375 5.65464 5.76108 5.88747 5.93491 5.97085 5.97937 6.09235 6.17467 6.24433 6.27762 6.38482 6.50077 6.58226 6.72473 6.78252 6.94207 7.02230 7.63436 8.13312 8.30753 8.46726 8.53727 9.06011 9.85498 10.19923 11.32013 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.004042 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.995618 B = 6925.105461 C = 7391.885265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.159 4.159 3 H 0.119 0.881 4 C 0.512 3.488 5 O -0.531 6.531 6 N -0.598 5.598 7 C 0.108 3.892 8 C -0.132 4.132 9 C -0.123 4.123 10 C 0.170 3.830 11 H 0.053 0.947 12 N -0.590 5.590 13 C -0.250 4.250 14 H 0.079 0.921 15 C 0.045 3.955 16 N -0.899 5.899 17 Si 0.871 3.129 18 H -0.288 1.288 19 H -0.304 1.304 20 H -0.270 1.270 21 C 0.132 3.868 22 C 0.064 3.936 23 O -0.533 6.533 24 C 0.101 3.899 25 C 0.299 3.701 26 C -0.193 4.193 27 F -0.192 7.192 28 F -0.191 7.191 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.031 0.969 43 H 0.352 0.648 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 6.250 -20.465 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.181 4.181 3 H 0.137 0.863 4 C 0.298 3.702 5 O -0.407 6.407 6 N -0.331 5.331 7 C -0.015 4.015 8 C -0.171 4.171 9 C -0.163 4.163 10 C 0.062 3.938 11 H 0.071 0.929 12 N -0.311 5.311 13 C -0.378 4.378 14 H 0.097 0.903 15 C -0.155 4.155 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.216 1.216 19 H -0.233 1.233 20 H -0.195 1.195 21 C 0.006 3.994 22 C -0.017 4.017 23 O -0.334 6.334 24 C -0.022 4.022 25 C 0.262 3.738 26 C -0.251 4.251 27 F -0.173 7.173 28 F -0.172 7.172 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.195 0.805 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.103 0.897 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.622 5.834 -19.645 21.864 hybrid contribution 0.268 -1.142 -0.100 1.177 sum -7.354 4.692 -19.744 21.586 Atomic orbital electron populations 1.21676 0.90361 1.04232 1.03086 1.22499 1.00555 1.01996 0.93022 0.86288 1.20037 0.81512 0.83779 0.84898 1.90709 1.55945 1.32069 1.61975 1.48247 1.18836 1.31608 1.34372 1.21799 0.92818 0.88406 0.98504 1.21951 0.94870 1.00827 0.99464 1.21912 0.99140 0.98830 0.96375 1.20717 0.89854 0.93349 0.89866 0.92920 1.44043 1.67677 1.07198 1.12214 1.18514 1.41259 0.96360 0.81690 0.90348 1.25261 0.97761 0.97058 0.95433 1.69855 1.42382 1.41595 1.00180 0.87061 0.81757 0.84490 0.76482 1.21643 1.23276 1.19514 1.21349 0.91234 0.86864 0.99933 1.22851 0.93465 0.93825 0.91572 1.86953 1.17983 1.82704 1.45800 1.22484 0.95743 0.96552 0.87385 1.20850 0.75155 0.80968 0.96845 1.22812 1.04753 1.01559 0.95939 1.93054 1.30341 1.96457 1.97434 1.93053 1.84928 1.41864 1.97378 0.90860 0.91310 0.90469 0.90790 0.91093 0.91447 0.91325 0.92109 0.91042 0.93053 0.92075 0.92975 0.95979 0.95030 0.80460 0.89979 0.89905 0.89071 0.89701 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.20 37.16 0.30 -0.99 16 2 C -0.16 -1.73 1.75 -91.77 -0.16 -1.89 16 3 H 0.12 0.94 6.03 -51.93 -0.31 0.63 16 4 C 0.51 8.29 6.24 -10.98 -0.07 8.22 16 5 O -0.53 -10.79 15.70 5.56 0.09 -10.70 16 6 N -0.60 -9.63 2.94 -172.50 -0.51 -10.14 16 7 C 0.11 1.33 5.47 -3.70 -0.02 1.31 16 8 C -0.13 -1.72 6.02 -26.61 -0.16 -1.88 16 9 C -0.12 -2.11 5.06 -26.69 -0.13 -2.25 16 10 C 0.17 3.36 2.79 -67.58 -0.19 3.17 16 11 H 0.05 1.02 7.82 -51.92 -0.41 0.62 16 12 N -0.59 -13.77 2.04 -165.26 -0.34 -14.10 16 13 C -0.25 -6.81 8.19 -15.06 -0.12 -6.93 16 14 H 0.08 2.30 6.91 -52.49 -0.36 1.94 16 15 C 0.05 1.31 5.33 -17.43 -0.09 1.22 16 16 N -0.90 -27.88 13.97 55.49 0.78 -27.10 16 17 Si 0.87 23.11 24.91 -169.99 -4.24 18.88 16 18 H -0.29 -7.55 6.67 56.52 0.38 -7.17 16 19 H -0.30 -8.24 7.11 56.52 0.40 -7.84 16 20 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.13 2.94 4.89 -4.05 -0.02 2.92 16 22 C 0.06 1.23 7.39 37.16 0.27 1.50 16 23 O -0.53 -11.48 13.13 -35.23 -0.46 -11.94 16 24 C 0.10 2.02 5.80 -3.49 -0.02 2.00 16 25 C 0.30 3.22 1.76 -26.73 -0.05 3.18 16 26 C -0.19 -1.20 9.14 37.15 0.34 -0.86 16 27 F -0.19 -2.39 13.88 2.25 0.03 -2.36 16 28 F -0.19 -2.66 16.07 2.25 0.04 -2.62 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.41 6.85 -51.93 -0.36 0.06 16 31 H 0.08 0.88 7.41 -51.93 -0.38 0.50 16 32 H 0.07 0.69 4.95 -51.93 -0.26 0.43 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.91 6.75 -51.93 -0.35 0.55 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.06 1.53 2.95 -51.93 -0.15 1.38 16 40 H 0.05 1.05 7.94 -51.93 -0.41 0.63 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.35 5.57 9.12 45.56 0.42 5.98 16 44 H 0.08 1.77 7.59 -51.93 -0.39 1.37 16 45 H 0.08 1.87 7.04 -51.93 -0.37 1.51 16 46 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.09 0.44 6.70 -51.93 -0.35 0.10 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -35.83 370.02 -5.75 -41.58 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.59 Total: 4.23 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -0.12 Total: 8.71 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.07 Total: -51.35 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.38 Total: -22.65 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.07 Total: -4.98 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.24 Total: 18.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.83 -5.75 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689207722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.217 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds