Wall clock time and date at job start Tue Mar 31 2020 18:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 120.00016 * 2 1 4 4 H 1.08006 * 120.00236 * 322.17137 * 3 2 1 5 5 C 1.38811 * 120.00106 * 142.18069 * 3 2 1 6 6 N 1.31615 * 120.00451 * 157.20510 * 5 3 2 7 7 Si 1.86809 * 119.99583 * 337.20067 * 5 3 2 8 8 H 1.48504 * 109.46816 * 95.81885 * 7 5 3 9 9 H 1.48502 * 109.46874 * 215.81795 * 7 5 3 10 10 H 1.48495 * 109.47066 * 335.81993 * 7 5 3 11 11 C 1.46504 * 119.99464 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47353 * 90.00349 * 11 2 1 13 13 H 1.08996 * 110.89158 * 57.41986 * 12 11 2 14 14 C 1.55165 * 111.00095 * 293.54161 * 12 11 2 15 15 C 1.54330 * 102.94236 * 206.42673 * 14 12 11 16 16 N 1.47017 * 107.26743 * 22.19092 * 15 14 12 17 17 C 1.34784 * 125.64430 * 181.02309 * 16 15 14 18 18 O 1.21281 * 120.00028 * 180.02562 * 17 16 15 19 19 C 1.50702 * 120.00104 * 0.02793 * 17 16 15 20 20 C 1.52996 * 109.47176 * 179.97438 * 19 17 16 21 21 C 1.50704 * 109.47094 * 179.97438 * 20 19 17 22 22 C 1.38243 * 119.96942 * 90.00387 * 21 20 19 23 23 C 1.38200 * 120.02479 * 180.27772 * 22 21 20 24 24 C 1.38467 * 119.97082 * 359.51218 * 23 22 21 25 25 F 1.35097 * 120.02482 * 180.20937 * 24 23 22 26 26 C 1.38458 * 119.94835 * 0.48412 * 24 23 22 27 27 C 1.38195 * 119.97520 * 359.75273 * 26 24 23 28 28 C 1.47423 * 108.70808 * 1.28692 * 16 15 14 29 29 H 1.08996 * 109.47126 * 272.89096 * 1 2 3 30 30 H 1.09002 * 109.46785 * 32.88882 * 1 2 3 31 31 H 1.08998 * 109.47327 * 152.88802 * 1 2 3 32 32 H 0.97002 * 120.00036 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47268 * 329.99435 * 11 2 1 34 34 H 1.09002 * 109.46212 * 209.99966 * 11 2 1 35 35 H 1.09002 * 110.72299 * 88.06317 * 14 12 11 36 36 H 1.09002 * 110.71819 * 324.78903 * 14 12 11 37 37 H 1.09004 * 109.87956 * 262.77729 * 15 14 12 38 38 H 1.08998 * 110.00917 * 141.68361 * 15 14 12 39 39 H 1.09002 * 109.46777 * 59.99757 * 19 17 16 40 40 H 1.08997 * 109.46870 * 299.99857 * 19 17 16 41 41 H 1.09006 * 109.46920 * 59.99954 * 20 19 17 42 42 H 1.08997 * 109.47325 * 299.99849 * 20 19 17 43 43 H 1.08002 * 119.99358 * 359.97438 * 22 21 20 44 44 H 1.07997 * 120.01673 * 179.72219 * 23 22 21 45 45 H 1.07999 * 120.01484 * 179.72087 * 26 24 23 46 46 H 1.08000 * 119.98845 * 180.02562 * 27 26 24 47 47 H 1.09002 * 110.36069 * 94.48507 * 28 16 15 48 48 H 1.08996 * 110.36720 * 216.80097 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7799 2.0230 -0.5736 5 6 3.3191 1.3121 0.7371 6 7 4.2037 2.2322 0.4156 7 14 3.6374 0.1762 2.1856 8 1 4.4786 -0.9652 1.7440 9 1 4.3422 0.9254 3.2566 10 1 2.3444 -0.3347 2.7074 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 1 3.0020 -0.9451 -1.9920 14 6 1.1224 -2.0616 -2.1606 15 6 1.5675 -3.0735 -3.2375 16 7 2.8440 -3.6512 -2.7924 17 6 3.5709 -4.5638 -3.4672 18 8 4.6138 -4.9726 -3.0022 19 6 3.0879 -5.0762 -4.7996 20 6 4.0899 -6.0938 -5.3484 21 6 3.6065 -6.6066 -6.6805 22 6 3.9768 -5.9602 -7.8450 23 6 3.5295 -6.4261 -9.0668 24 6 2.7184 -7.5468 -9.1249 25 9 2.2840 -8.0057 -10.3190 26 6 2.3483 -8.1935 -7.9578 27 6 2.7928 -7.7228 -6.7369 28 6 3.1942 -3.0717 -1.4828 29 1 -0.3633 0.0518 1.0263 30 1 -0.3633 0.8630 -0.5581 31 1 -0.3634 -0.9147 -0.4683 32 1 5.0207 2.3206 0.9310 33 1 1.6084 -2.0286 0.5130 34 1 3.1499 -1.1386 0.5134 35 1 0.6864 -1.1750 -2.6212 36 1 0.4196 -2.5217 -1.4660 37 1 1.7038 -2.5637 -4.1913 38 1 0.8205 -3.8604 -3.3412 39 1 2.9966 -4.2439 -5.4974 40 1 2.1161 -5.5538 -4.6745 41 1 4.1816 -6.9261 -4.6505 42 1 5.0615 -5.6158 -5.4735 43 1 4.6118 -5.0877 -7.7997 44 1 3.8151 -5.9183 -9.9761 45 1 1.7121 -9.0651 -8.0016 46 1 2.5046 -8.2273 -5.8265 47 1 2.8477 -3.7187 -0.6769 48 1 4.2710 -2.9190 -1.4113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691968597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:49 Heat of formation + Delta-G solvation = -37.926363 kcal Electronic energy + Delta-G solvation = -27954.972898 eV Core-core repulsion = 23924.673254 eV Total energy + Delta-G solvation = -4030.299644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.23139 -40.17639 -39.43959 -37.76655 -35.57544 -34.12166 -32.11717 -31.53160 -31.22158 -29.70185 -29.28000 -26.60779 -25.82021 -24.39874 -23.44923 -22.83254 -21.47818 -21.14597 -20.07609 -19.08795 -18.04006 -17.26055 -16.92302 -16.75450 -16.05189 -15.93935 -15.70592 -15.48067 -15.24765 -14.72532 -14.36287 -14.20445 -13.93745 -13.71945 -13.51264 -13.31588 -13.25732 -13.06808 -12.84326 -12.56159 -12.34031 -12.21757 -12.01512 -11.77593 -11.68897 -11.57165 -11.50918 -11.18739 -11.13688 -10.84514 -10.74622 -10.36180 -10.23011 -9.89269 -9.77849 -9.54138 -9.51181 -8.90841 -8.57254 -8.53323 -6.85107 -6.03514 -3.44949 0.73184 0.83054 2.64617 2.98206 3.22510 3.29039 3.45152 3.49676 3.89086 4.25423 4.31279 4.48973 4.49806 4.64830 4.75190 4.77028 4.80988 4.87520 4.95794 4.99173 5.10948 5.26138 5.29039 5.34994 5.45079 5.49223 5.58565 5.61137 5.62362 5.73121 5.75602 5.83386 5.89503 5.95654 6.01721 6.09909 6.18668 6.19008 6.23058 6.29592 6.40882 6.50215 6.55965 6.65918 6.70042 6.88188 7.59044 8.01798 8.18239 8.34097 8.94728 9.67381 10.08119 11.12055 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.002018 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.470583 B =13870.519313 C =14171.034864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.609 5.609 3 C -0.271 4.271 4 H 0.078 0.922 5 C 0.036 3.964 6 N -0.898 5.898 7 Si 0.875 3.125 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.150 3.850 12 C -0.113 4.113 13 H 0.092 0.908 14 C -0.118 4.118 15 C 0.100 3.900 16 N -0.615 5.615 17 C 0.524 3.476 18 O -0.546 6.546 19 C -0.130 4.130 20 C -0.066 4.066 21 C -0.089 4.089 22 C -0.086 4.086 23 C -0.151 4.151 24 C 0.090 3.910 25 F -0.142 7.142 26 C -0.152 4.152 27 C -0.087 4.087 28 C 0.106 3.894 29 H 0.006 0.994 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.064 0.936 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 -19.466 -16.119 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.333 5.333 3 C -0.400 4.400 4 H 0.096 0.904 5 C -0.165 4.165 6 N -0.539 5.539 7 Si 0.705 3.295 8 H -0.212 1.212 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.023 3.977 12 C -0.135 4.135 13 H 0.110 0.890 14 C -0.155 4.155 15 C -0.023 4.023 16 N -0.349 5.349 17 C 0.313 3.687 18 O -0.424 6.424 19 C -0.169 4.169 20 C -0.103 4.103 21 C -0.089 4.089 22 C -0.104 4.104 23 C -0.170 4.170 24 C 0.071 3.929 25 F -0.121 7.121 26 C -0.171 4.171 27 C -0.105 4.105 28 C -0.017 4.017 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.151 0.849 47 H 0.083 0.917 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.993 -19.640 -15.914 25.766 hybrid contribution 0.117 -0.572 0.533 0.790 sum -4.876 -20.212 -15.381 25.862 Atomic orbital electron populations 1.21146 0.84607 0.98754 0.97748 1.43982 1.00705 1.01827 1.86742 1.18755 1.05958 0.90804 1.24439 0.90448 1.25480 0.96858 0.96438 0.97677 1.69873 1.08491 1.36041 1.39457 0.86951 0.77993 0.80154 0.84364 1.21190 1.22856 1.19470 1.21059 0.96580 0.87928 0.92089 1.23110 0.94878 0.94690 1.00794 0.88955 1.22642 0.98218 0.97986 0.96704 1.22127 0.84886 0.96476 0.98836 1.48613 1.23225 1.41563 1.21518 1.20291 0.83684 0.78422 0.86320 1.90707 1.23542 1.58331 1.69838 1.21624 1.00630 1.00216 0.94478 1.20353 0.98707 0.98938 0.92334 1.20022 0.97764 0.95676 0.95488 1.21002 0.98941 0.99564 0.90931 1.21175 0.99583 0.96585 0.99633 1.17753 0.98659 0.95691 0.80793 1.91499 1.88119 1.88385 1.44093 1.21155 1.02765 1.01661 0.91478 1.20971 0.96426 0.95812 0.97323 1.22426 1.01017 0.94338 0.83889 0.97547 0.94210 0.94837 0.92660 0.94070 0.92626 0.89755 0.91046 0.91559 0.91831 0.88766 0.88902 0.89880 0.89774 0.84777 0.84706 0.84767 0.84887 0.91743 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.27 10.35 59.85 0.62 2.89 16 2 N -0.61 -13.64 2.39 -181.12 -0.43 -14.07 16 3 C -0.27 -7.31 9.92 -15.06 -0.15 -7.46 16 4 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 5 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 6 N -0.90 -26.91 13.97 55.49 0.78 -26.13 16 7 Si 0.88 21.84 25.08 -169.99 -4.26 17.57 16 8 H -0.28 -6.88 6.68 56.52 0.38 -6.50 16 9 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.15 3.01 4.02 -4.04 -0.02 3.00 16 12 C -0.11 -1.93 3.31 -88.35 -0.29 -2.22 16 13 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 14 C -0.12 -1.56 4.99 -24.89 -0.12 -1.68 16 15 C 0.10 1.10 6.48 -3.06 -0.02 1.08 16 16 N -0.62 -8.45 3.32 -170.38 -0.57 -9.02 16 17 C 0.52 7.13 7.85 -10.98 -0.09 7.05 16 18 O -0.55 -9.47 16.24 5.56 0.09 -9.38 16 19 C -0.13 -1.18 4.87 -27.88 -0.14 -1.31 16 20 C -0.07 -0.57 4.63 -27.88 -0.13 -0.70 16 21 C -0.09 -0.70 5.13 -104.62 -0.54 -1.23 16 22 C -0.09 -0.65 9.70 -39.59 -0.38 -1.03 16 23 C -0.15 -1.16 10.03 -39.51 -0.40 -1.56 16 24 C 0.09 0.77 7.30 -39.42 -0.29 0.48 16 25 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 26 C -0.15 -1.14 10.03 -39.52 -0.40 -1.53 16 27 C -0.09 -0.63 9.70 -39.59 -0.38 -1.01 16 28 C 0.11 1.69 6.38 -2.41 -0.02 1.67 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.04 0.72 8.06 -51.93 -0.42 0.31 16 31 H 0.03 0.51 6.11 -51.93 -0.32 0.19 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.04 0.74 8.04 -51.93 -0.42 0.32 16 34 H 0.06 1.27 3.35 -51.93 -0.17 1.09 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.89 7.16 -51.93 -0.37 0.52 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 42 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 47 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 48 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -32.21 389.62 -8.91 -41.13 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.60 Total: -2.02 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.83 Total: -2.63 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.22 Total: -49.22 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.26 Total: 17.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.21 -8.91 -41.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691968597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.199 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds