Wall clock time and date at job start Tue Mar 31 2020 18:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 120.00016 * 2 1 4 4 H 1.08006 * 120.00236 * 322.17137 * 3 2 1 5 5 C 1.38811 * 120.00106 * 142.18069 * 3 2 1 6 6 N 1.31615 * 120.00451 * 157.20510 * 5 3 2 7 7 Si 1.86809 * 119.99583 * 337.20067 * 5 3 2 8 8 H 1.48504 * 109.46816 * 95.81885 * 7 5 3 9 9 H 1.48502 * 109.46874 * 215.81795 * 7 5 3 10 10 H 1.48495 * 109.47066 * 335.81993 * 7 5 3 11 11 C 1.46504 * 119.99464 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47353 * 90.00349 * 11 2 1 13 13 H 1.08996 * 110.89158 * 57.41986 * 12 11 2 14 14 C 1.55165 * 111.00095 * 293.54161 * 12 11 2 15 15 C 1.54330 * 102.94236 * 206.42673 * 14 12 11 16 16 N 1.47017 * 107.26743 * 22.19092 * 15 14 12 17 17 C 1.34784 * 125.64430 * 181.02309 * 16 15 14 18 18 O 1.21281 * 120.00028 * 180.02562 * 17 16 15 19 19 C 1.50702 * 120.00104 * 0.02793 * 17 16 15 20 20 C 1.52996 * 109.47176 * 179.97438 * 19 17 16 21 21 C 1.50704 * 109.47094 * 179.97438 * 20 19 17 22 22 C 1.38243 * 119.96942 * 90.00387 * 21 20 19 23 23 C 1.38200 * 120.02479 * 180.27772 * 22 21 20 24 24 C 1.38467 * 119.97082 * 359.51218 * 23 22 21 25 25 F 1.35097 * 120.02482 * 180.20937 * 24 23 22 26 26 C 1.38458 * 119.94835 * 0.48412 * 24 23 22 27 27 C 1.38195 * 119.97520 * 359.75273 * 26 24 23 28 28 C 1.47423 * 108.70808 * 1.28692 * 16 15 14 29 29 H 1.08996 * 109.47126 * 272.89096 * 1 2 3 30 30 H 1.09002 * 109.46785 * 32.88882 * 1 2 3 31 31 H 1.08998 * 109.47327 * 152.88802 * 1 2 3 32 32 H 0.97002 * 120.00036 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47268 * 329.99435 * 11 2 1 34 34 H 1.09002 * 109.46212 * 209.99966 * 11 2 1 35 35 H 1.09002 * 110.72299 * 88.06317 * 14 12 11 36 36 H 1.09002 * 110.71819 * 324.78903 * 14 12 11 37 37 H 1.09004 * 109.87956 * 262.77729 * 15 14 12 38 38 H 1.08998 * 110.00917 * 141.68361 * 15 14 12 39 39 H 1.09002 * 109.46777 * 59.99757 * 19 17 16 40 40 H 1.08997 * 109.46870 * 299.99857 * 19 17 16 41 41 H 1.09006 * 109.46920 * 59.99954 * 20 19 17 42 42 H 1.08997 * 109.47325 * 299.99849 * 20 19 17 43 43 H 1.08002 * 119.99358 * 359.97438 * 22 21 20 44 44 H 1.07997 * 120.01673 * 179.72219 * 23 22 21 45 45 H 1.07999 * 120.01484 * 179.72087 * 26 24 23 46 46 H 1.08000 * 119.98845 * 180.02562 * 27 26 24 47 47 H 1.09002 * 110.36069 * 94.48507 * 28 16 15 48 48 H 1.08996 * 110.36720 * 216.80097 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7799 2.0230 -0.5736 5 6 3.3191 1.3121 0.7371 6 7 4.2037 2.2322 0.4156 7 14 3.6374 0.1762 2.1856 8 1 4.4786 -0.9652 1.7440 9 1 4.3422 0.9254 3.2566 10 1 2.3444 -0.3347 2.7074 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 1 3.0020 -0.9451 -1.9920 14 6 1.1224 -2.0616 -2.1606 15 6 1.5675 -3.0735 -3.2375 16 7 2.8440 -3.6512 -2.7924 17 6 3.5709 -4.5638 -3.4672 18 8 4.6138 -4.9726 -3.0022 19 6 3.0879 -5.0762 -4.7996 20 6 4.0899 -6.0938 -5.3484 21 6 3.6065 -6.6066 -6.6805 22 6 3.9768 -5.9602 -7.8450 23 6 3.5295 -6.4261 -9.0668 24 6 2.7184 -7.5468 -9.1249 25 9 2.2840 -8.0057 -10.3190 26 6 2.3483 -8.1935 -7.9578 27 6 2.7928 -7.7228 -6.7369 28 6 3.1942 -3.0717 -1.4828 29 1 -0.3633 0.0518 1.0263 30 1 -0.3633 0.8630 -0.5581 31 1 -0.3634 -0.9147 -0.4683 32 1 5.0207 2.3206 0.9310 33 1 1.6084 -2.0286 0.5130 34 1 3.1499 -1.1386 0.5134 35 1 0.6864 -1.1750 -2.6212 36 1 0.4196 -2.5217 -1.4660 37 1 1.7038 -2.5637 -4.1913 38 1 0.8205 -3.8604 -3.3412 39 1 2.9966 -4.2439 -5.4974 40 1 2.1161 -5.5538 -4.6745 41 1 4.1816 -6.9261 -4.6505 42 1 5.0615 -5.6158 -5.4735 43 1 4.6118 -5.0877 -7.7997 44 1 3.8151 -5.9183 -9.9761 45 1 1.7121 -9.0651 -8.0016 46 1 2.5046 -8.2273 -5.8265 47 1 2.8477 -3.7187 -0.6769 48 1 4.2710 -2.9190 -1.4113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691968597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:48 Heat of formation + Delta-G solvation = -55.723077 kcal Electronic energy + Delta-G solvation = -27955.744622 eV Core-core repulsion = 23924.673254 eV Total energy + Delta-G solvation = -4031.071368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.88148 -41.19587 -40.10562 -39.02155 -37.16612 -34.85384 -33.92781 -32.73730 -32.06548 -30.57813 -30.28412 -28.14151 -27.33719 -25.43406 -23.98672 -23.84628 -22.94921 -22.05172 -21.44641 -20.11401 -18.73973 -18.62479 -18.19455 -17.53698 -17.37442 -16.97446 -16.62657 -16.51452 -16.34790 -15.84443 -15.45317 -15.21981 -14.89796 -14.82571 -14.65255 -14.45870 -14.40144 -14.07763 -13.98757 -13.87792 -13.55394 -13.43462 -13.27025 -12.92711 -12.69412 -12.63359 -12.49344 -12.41701 -12.38181 -12.16370 -11.91847 -11.78549 -11.75799 -11.54091 -11.27282 -10.93416 -10.62251 -10.04601 -9.65035 -9.51538 -8.72696 -8.20814 -5.57164 0.14277 0.29755 1.29810 1.39910 1.50256 1.62371 1.99676 2.41189 2.62571 3.01927 3.31278 3.35389 3.50642 3.72872 3.77942 3.86184 3.98250 4.00003 4.04109 4.13980 4.27201 4.33639 4.37801 4.40661 4.46483 4.50098 4.59077 4.69197 4.75495 4.79146 4.86792 4.90031 4.94048 5.03456 5.04107 5.07424 5.13777 5.19160 5.19879 5.20817 5.26536 5.30073 5.32716 5.47775 5.61318 5.94814 5.95100 6.17636 6.56810 7.00989 7.14281 7.65297 8.06615 8.99029 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.002018 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.470583 B =13870.519313 C =14171.034864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.620 5.620 3 C -0.253 4.253 4 H 0.043 0.957 5 C -0.022 4.022 6 N -0.948 5.948 7 Si 0.938 3.062 8 H -0.278 1.278 9 H -0.311 1.311 10 H -0.256 1.256 11 C 0.145 3.855 12 C -0.109 4.109 13 H 0.053 0.947 14 C -0.110 4.110 15 C 0.102 3.898 16 N -0.618 5.618 17 C 0.518 3.482 18 O -0.592 6.592 19 C -0.118 4.118 20 C -0.060 4.060 21 C -0.091 4.091 22 C -0.091 4.091 23 C -0.156 4.156 24 C 0.071 3.929 25 F -0.152 7.152 26 C -0.154 4.154 27 C -0.087 4.087 28 C 0.110 3.890 29 H 0.009 0.991 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.261 0.739 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.077 0.923 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 -22.113 -16.709 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.345 5.345 3 C -0.384 4.384 4 H 0.060 0.940 5 C -0.218 4.218 6 N -0.592 5.592 7 Si 0.767 3.233 8 H -0.205 1.205 9 H -0.240 1.240 10 H -0.180 1.180 11 C 0.020 3.980 12 C -0.131 4.131 13 H 0.071 0.929 14 C -0.147 4.147 15 C -0.019 4.019 16 N -0.351 5.351 17 C 0.309 3.691 18 O -0.473 6.473 19 C -0.157 4.157 20 C -0.097 4.097 21 C -0.091 4.091 22 C -0.109 4.109 23 C -0.175 4.175 24 C 0.052 3.948 25 F -0.131 7.131 26 C -0.172 4.172 27 C -0.104 4.104 28 C -0.013 4.013 29 H 0.027 0.973 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.167 0.833 46 H 0.169 0.831 47 H 0.095 0.905 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.571 -22.317 -16.523 28.781 hybrid contribution 0.857 0.273 0.644 1.106 sum -6.714 -22.044 -15.879 27.985 Atomic orbital electron populations 1.21282 0.81915 1.00808 0.98303 1.44109 1.02399 1.01053 1.86902 1.18664 1.05576 0.91658 1.22458 0.93980 1.26077 0.97143 0.98410 1.00211 1.70000 1.09351 1.38933 1.40962 0.85929 0.78285 0.78333 0.80729 1.20513 1.23975 1.18004 1.21119 0.95418 0.87549 0.93928 1.22793 0.97295 0.94150 0.98825 0.92890 1.22614 0.96074 0.98760 0.97275 1.22293 0.84254 0.97036 0.98364 1.48716 1.24243 1.41490 1.20691 1.21140 0.82902 0.77673 0.87375 1.90689 1.25601 1.59898 1.71151 1.21643 1.01563 1.00795 0.91700 1.20244 0.98156 0.98614 0.92729 1.19968 0.98137 0.96110 0.94923 1.21162 0.98975 0.99964 0.90774 1.21343 0.99366 0.96480 1.00268 1.18036 0.99481 0.96436 0.80871 1.91472 1.88335 1.88568 1.44714 1.21363 1.02721 1.01986 0.91161 1.21175 0.95879 0.95472 0.97921 1.22201 0.99114 0.94101 0.85925 0.97268 0.94513 0.90726 0.92996 0.90949 0.95671 0.89916 0.89098 0.90162 0.88048 0.87120 0.86153 0.90444 0.91138 0.83720 0.83636 0.83281 0.83062 0.90528 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.14 10.35 127.77 1.32 5.46 16 2 N -0.62 -27.06 2.39 -726.93 -1.74 -28.79 16 3 C -0.25 -13.92 9.92 84.03 0.83 -13.09 16 4 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 5 C -0.02 -1.27 5.29 84.86 0.45 -0.82 16 6 N -0.95 -59.17 13.97 21.65 0.30 -58.87 16 7 Si 0.94 46.03 25.08 68.60 1.72 47.75 16 8 H -0.28 -13.17 6.68 99.48 0.66 -12.51 16 9 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 10 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 11 C 0.15 5.61 4.02 86.38 0.35 5.95 16 12 C -0.11 -3.60 3.31 -9.33 -0.03 -3.63 16 13 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 14 C -0.11 -2.50 4.99 31.79 0.16 -2.34 16 15 C 0.10 1.83 6.48 86.73 0.56 2.39 16 16 N -0.62 -15.49 3.32 -811.35 -2.70 -18.19 16 17 C 0.52 13.12 7.85 87.66 0.69 13.81 16 18 O -0.59 -20.37 16.24 -3.03 -0.05 -20.42 16 19 C -0.12 -1.75 4.87 29.85 0.15 -1.61 16 20 C -0.06 -0.92 4.63 29.85 0.14 -0.78 16 21 C -0.09 -1.20 5.13 -19.86 -0.10 -1.31 16 22 C -0.09 -1.18 9.70 22.26 0.22 -0.96 16 23 C -0.16 -2.15 10.03 22.32 0.22 -1.93 16 24 C 0.07 1.11 7.30 22.38 0.16 1.27 16 25 F -0.15 -2.74 17.27 44.97 0.78 -1.97 16 26 C -0.15 -1.95 10.03 22.31 0.22 -1.73 16 27 C -0.09 -1.00 9.70 22.26 0.22 -0.79 16 28 C 0.11 3.40 6.38 86.93 0.55 3.95 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.04 1.27 8.06 -2.39 -0.02 1.25 16 31 H 0.07 1.93 6.11 -2.39 -0.01 1.92 16 32 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 34 H 0.03 1.13 3.35 -2.39 -0.01 1.12 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.76 7.16 -2.39 -0.02 1.74 16 37 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.29 8.04 -2.38 -0.02 1.27 16 42 H 0.07 1.28 8.04 -2.39 -0.02 1.27 16 43 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 44 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 46 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 47 H 0.08 2.17 8.04 -2.39 -0.02 2.15 16 48 H 0.05 1.68 8.03 -2.39 -0.02 1.66 16 Total: -1.00 -73.71 389.62 5.32 -68.39 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.90 Total: 8.26 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 6.11 Total: 3.85 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.13 Total: -105.85 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.72 Total: 47.75 kcal Total: -73.71 5.32 -68.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691968597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.666 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds